RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 LRRC59Q96AG4 307 aaKnown RBP12.66□□□□□ -0.38
USP28-215ENST00000545608 ADGRF5Q8IZF2 1346 aa12.65□□□□□ -0.38
USP28-215ENST00000545608 PTCH1Q13635 1447 aa12.65□□□□□ -0.38
USP28-215ENST00000545608 ORAI2Q96SN7 254 aa12.65□□□□□ -0.38
USP28-215ENST00000545608 C1orf167Q5SNV9 1468 aa12.64□□□□□ -0.39
USP28-215ENST00000545608 SHPRHQ149N8 1683 aa12.64□□□□□ -0.39
USP28-215ENST00000545608 CCDC144AA2RUR9 1427 aa12.62□□□□□ -0.39
USP28-215ENST00000545608 SETD1AO15047 1707 aaKnown RBP12.62□□□□□ -0.39
USP28-215ENST00000545608 NALCNQ8IZF0 1738 aa12.62□□□□□ -0.39
USP28-215ENST00000545608 PNPLA6Q8IY17 1366 aa12.62□□□□□ -0.39
USP28-215ENST00000545608 ZNF219Q9P2Y4 722 aaPredicted RBP12.62□□□□□ -0.39
USP28-215ENST00000545608 SPATA31E1Q6ZUB1 1445 aa12.62□□□□□ -0.39
USP28-215ENST00000545608 PRAG1Q86YV5 1406 aa12.62□□□□□ -0.39
USP28-215ENST00000545608 AFF2P51816 1311 aa12.62□□□□□ -0.39
USP28-215ENST00000545608 RXRBP28702 533 aa12.61□□□□□ -0.39
USP28-215ENST00000545608 STK26Q9P289 416 aa12.61□□□□□ -0.39
USP28-215ENST00000545608 NHSL1Q5SYE7 1610 aa12.61□□□□□ -0.39
USP28-215ENST00000545608 SOS2Q07890 1332 aaPredicted RBP12.61□□□□□ -0.39
USP28-215ENST00000545608 TMEM132EQ6IEE7 984 aa12.6□□□□□ -0.39
USP28-215ENST00000545608 WAPLQ7Z5K2 1190 aa12.6□□□□□ -0.39
USP28-215ENST00000545608 ANKRD30BQ9BXX2 1392 aa12.59□□□□□ -0.39
USP28-215ENST00000545608 PPLO60437 1756 aa12.59□□□□□ -0.39
USP28-215ENST00000545608 C8orf37Q96NL8 207 aa12.59□□□□□ -0.39
USP28-215ENST00000545608 ADAMTS2O95450 1211 aa12.58□□□□□ -0.4
USP28-215ENST00000545608 LRPPRCP42704 1394 aaKnown RBP12.57□□□□□ -0.4
USP28-215ENST00000545608 ESCO1Q5FWF5 840 aa12.57□□□□□ -0.4
USP28-215ENST00000545608 UPF1Q92900 1129 aaKnown RBP eCLIP12.57□□□□□ -0.4
USP28-215ENST00000545608 QTRT2Q9H974 415 aaKnown RBP12.57□□□□□ -0.4
USP28-215ENST00000545608 ABCC11Q96J66 1382 aa12.56□□□□□ -0.4
USP28-215ENST00000545608 PLEKHH1Q9ULM0 1364 aa12.56□□□□□ -0.4
USP28-215ENST00000545608 NUTM2FA1L443 756 aa12.56□□□□□ -0.4
USP28-215ENST00000545608 NGLY1Q96IV0 654 aa12.56□□□□□ -0.4
USP28-215ENST00000545608 TECPR2O15040 1411 aa12.55□□□□□ -0.4
USP28-215ENST00000545608 FOXO3O43524 673 aa12.55□□□□□ -0.4
USP28-215ENST00000545608 C14orf93Q9H972 538 aaKnown RBP12.55□□□□□ -0.4
USP28-215ENST00000545608 PIK3C2GO75747 1445 aa12.54□□□□□ -0.4
USP28-215ENST00000545608 XPCQ01831 940 aaPredicted RBP12.54□□□□□ -0.4
USP28-215ENST00000545608 CFAP70Q5T0N1 1121 aa12.54□□□□□ -0.4
USP28-215ENST00000545608 NPHP3Q7Z494 1330 aa12.54□□□□□ -0.4
USP28-215ENST00000545608 ACIN1Q9UKV3 1341 aaKnown RBP12.54□□□□□ -0.4
USP28-215ENST00000545608 LAMC1P11047 1609 aa12.54□□□□□ -0.4
USP28-215ENST00000545608 RBM6P78332 1123 aaKnown RBP12.53□□□□□ -0.4
USP28-215ENST00000545608 SIRT1Q96EB6 747 aa12.53□□□□□ -0.4
USP28-215ENST00000545608 RAB3GAP2Q9H2M9 1393 aa12.53□□□□□ -0.4
USP28-215ENST00000545608 YTHDC2Q9H6S0 1430 aaKnown RBP12.53□□□□□ -0.4
USP28-215ENST00000545608 CDK12Q9NYV4 1490 aaPredicted RBP12.53□□□□□ -0.4
USP28-215ENST00000545608 CDC42BPGQ6DT37 1551 aa12.52□□□□□ -0.41
USP28-215ENST00000545608 SLC24A1O60721 1099 aa12.51□□□□□ -0.41
USP28-215ENST00000545608 FNBP4Q8N3X1 1017 aaPredicted RBP12.51□□□□□ -0.41
USP28-215ENST00000545608 USP21Q9UK80 565 aa12.51□□□□□ -0.41
USP28-215ENST00000545608 IFT172Q9UG01 1749 aa12.51□□□□□ -0.41
USP28-215ENST00000545608 RGS12O14924 1447 aa12.5□□□□□ -0.41
USP28-215ENST00000545608 PXDNQ92626 1479 aa12.5□□□□□ -0.41
USP28-215ENST00000545608 NRXN1Q9ULB1 1477 aa12.49□□□□□ -0.41
USP28-215ENST00000545608 DHX57Q6P158 1386 aaKnown RBP12.49□□□□□ -0.41
USP28-215ENST00000545608 MYOM2P54296 1465 aa12.48□□□□□ -0.41
USP28-215ENST00000545608 SAFB2Q14151 953 aaKnown RBP eCLIP12.48□□□□□ -0.41
USP28-215ENST00000545608 TRPC5Q9UL62 973 aaPredicted RBP12.48□□□□□ -0.41
USP28-215ENST00000545608 SPATA31A3Q5VYP0 1347 aa12.47□□□□□ -0.41
USP28-215ENST00000545608 KRT28Q7Z3Y7 464 aa12.47□□□□□ -0.41
USP28-215ENST00000545608 PRAM1Q96QH2 718 aa12.47□□□□□ -0.41
USP28-215ENST00000545608 KNDC1Q76NI1 1749 aa12.46□□□□□ -0.41
USP28-215ENST00000545608 PHF8Q9UPP1 1060 aa12.46□□□□□ -0.41
USP28-215ENST00000545608 KDM2AQ9Y2K7 1162 aa12.46□□□□□ -0.41
USP28-215ENST00000545608 COL22A1Q8NFW1 1626 aaPredicted RBP12.46□□□□□ -0.41
USP28-215ENST00000545608 ATRNO75882 1429 aa12.45□□□□□ -0.42
USP28-215ENST00000545608 POGKQ9P215 609 aa12.45□□□□□ -0.42
USP28-215ENST00000545608 DCAF11Q8TEB1 546 aa12.44□□□□□ -0.42
USP28-215ENST00000545608 TRAK1Q9UPV9 953 aa12.44□□□□□ -0.42
USP28-215ENST00000545608 FMN2Q9NZ56 1722 aa12.44□□□□□ -0.42
USP28-215ENST00000545608 BCL9LQ86UU0 1499 aa12.44□□□□□ -0.42
USP28-215ENST00000545608 HRCP23327 699 aa12.43□□□□□ -0.42
USP28-215ENST00000545608 PSME1Q06323 249 aa12.42□□□□□ -0.42
USP28-215ENST00000545608 PMFBP1Q8TBY8 1022 aa12.42□□□□□ -0.42
USP28-215ENST00000545608 CABLES1Q8TDN4 633 aa12.42□□□□□ -0.42
USP28-215ENST00000545608 GJD4Q96KN9 370 aaPredicted RBP12.42□□□□□ -0.42
USP28-215ENST00000545608 PLEKHG5O94827 1062 aa12.41□□□□□ -0.42
USP28-215ENST00000545608 UNC5CLQ8IV45 518 aa12.41□□□□□ -0.42
USP28-215ENST00000545608 HIRIP3Q9BW71 556 aaPredicted RBP12.41□□□□□ -0.42
USP28-215ENST00000545608 DLC1Q96QB1 1528 aa12.41□□□□□ -0.42
USP28-215ENST00000545608 MINK1Q8N4C8 1332 aaPredicted RBP12.4□□□□□ -0.42
USP28-215ENST00000545608 ADGRB1O14514 1584 aa12.4□□□□□ -0.42
USP28-215ENST00000545608 LMOD2Q6P5Q4 547 aa12.4□□□□□ -0.42
USP28-215ENST00000545608 ATAD2Q6PL18 1390 aa12.4□□□□□ -0.42
USP28-215ENST00000545608 KIF1AQ12756 1690 aa12.39□□□□□ -0.43
USP28-215ENST00000545608 TNS3Q68CZ2 1445 aa12.39□□□□□ -0.43
USP28-215ENST00000545608 SLIT2O94813 1529 aa12.39□□□□□ -0.43
USP28-215ENST00000545608 STAC3Q96MF2 364 aa12.39□□□□□ -0.43
USP28-215ENST00000545608 SBNO1A3KN83 1393 aa12.39□□□□□ -0.43
USP28-215ENST00000545608 PRR36Q9H6K5 1346 aa12.38□□□□□ -0.43
USP28-215ENST00000545608 ANKARQ7Z5J8 1434 aa12.38□□□□□ -0.43
USP28-215ENST00000545608 HAP1P54257 671 aaPredicted RBP12.38□□□□□ -0.43
USP28-215ENST00000545608 FBXO3Q9UK99 471 aa12.38□□□□□ -0.43
USP28-215ENST00000545608 SPDYE4A6NLX3 237 aa12.37□□□□□ -0.43
USP28-215ENST00000545608 WASLO00401 505 aaPredicted RBP12.37□□□□□ -0.43
USP28-215ENST00000545608 RGPD8O14715 1765 aaPredicted RBP12.37□□□□□ -0.43
USP28-215ENST00000545608 RALGAPBQ86X10 1494 aa12.35□□□□□ -0.43
USP28-215ENST00000545608 ARHGEF10O15013 1369 aa12.35□□□□□ -0.43
USP28-215ENST00000545608 MARF1Q9Y4F3 1742 aaKnown RBP12.35□□□□□ -0.43
USP28-215ENST00000545608 FAM83GA6ND36 823 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms