RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.46■□□□□ 0.87
TNFRSF1A-216ENST00000543995 ADGRL3Q9HAR2 1447 aa20.46■□□□□ 0.87
TNFRSF1A-216ENST00000543995 CENPJQ9HC77 1338 aaPredicted RBP20.46■□□□□ 0.87
TNFRSF1A-216ENST00000543995 C19orf44Q9H6X5 657 aa20.45■□□□□ 0.86
TNFRSF1A-216ENST00000543995 QRICH2Q9H0J4 1663 aa20.45■□□□□ 0.86
TNFRSF1A-216ENST00000543995 USP47Q96K76 1375 aa20.44■□□□□ 0.86
TNFRSF1A-216ENST00000543995 MINK1Q8N4C8 1332 aaPredicted RBP20.43■□□□□ 0.86
TNFRSF1A-216ENST00000543995 ATF3P18847 181 aa20.43■□□□□ 0.86
TNFRSF1A-216ENST00000543995 HIRIP3Q9BW71 556 aaPredicted RBP20.42■□□□□ 0.86
TNFRSF1A-216ENST00000543995 CADPS2Q86UW7 1296 aa20.4■□□□□ 0.86
TNFRSF1A-216ENST00000543995 DCCP43146 1447 aa20.39■□□□□ 0.85
TNFRSF1A-216ENST00000543995 CDC42BPGQ6DT37 1551 aa20.39■□□□□ 0.85
TNFRSF1A-216ENST00000543995 ST20-MTHFSA0A0A6YYL1 179 aa20.38■□□□□ 0.85
TNFRSF1A-216ENST00000543995 UBAP1LF5GYI3 381 aa20.38■□□□□ 0.85
TNFRSF1A-216ENST00000543995 TOM1O60784 492 aa20.38■□□□□ 0.85
TNFRSF1A-216ENST00000543995 EIF4G2P78344 907 aaKnown RBP eCLIP20.38■□□□□ 0.85
TNFRSF1A-216ENST00000543995 ADGRB2O60241 1585 aa20.38■□□□□ 0.85
TNFRSF1A-216ENST00000543995 FMN2Q9NZ56 1722 aa20.34■□□□□ 0.85
TNFRSF1A-216ENST00000543995 NUTM2FA1L443 756 aa20.34■□□□□ 0.85
TNFRSF1A-216ENST00000543995 WASLO00401 505 aaPredicted RBP20.34■□□□□ 0.85
TNFRSF1A-216ENST00000543995 HSPA5P11021 654 aaKnown RBP20.33■□□□□ 0.85
TNFRSF1A-216ENST00000543995 SBNO2Q9Y2G9 1366 aa20.33■□□□□ 0.84
TNFRSF1A-216ENST00000543995 SLAIN2Q9P270 581 aa20.32■□□□□ 0.84
TNFRSF1A-216ENST00000543995 EVC2Q86UK5 1308 aa20.32■□□□□ 0.84
TNFRSF1A-216ENST00000543995 SCAF1Q9H7N4 1312 aaKnown RBP20.32■□□□□ 0.84
TNFRSF1A-216ENST00000543995 PIP4K2BP78356 416 aa20.32■□□□□ 0.84
TNFRSF1A-216ENST00000543995 CDK19Q9BWU1 502 aa20.32■□□□□ 0.84
TNFRSF1A-216ENST00000543995 MST1RQ04912 1400 aa20.31■□□□□ 0.84
TNFRSF1A-216ENST00000543995 SRPK2P78362 688 aaKnown RBP20.31■□□□□ 0.84
TNFRSF1A-216ENST00000543995 SLC24A1O60721 1099 aa20.3■□□□□ 0.84
TNFRSF1A-216ENST00000543995 TESK2Q96S53 571 aa20.3■□□□□ 0.84
TNFRSF1A-216ENST00000543995 TULP4Q9NRJ4 1543 aa20.3■□□□□ 0.84
TNFRSF1A-216ENST00000543995 RGPD8O14715 1765 aaPredicted RBP20.29■□□□□ 0.84
TNFRSF1A-216ENST00000543995 C1orf167Q5SNV9 1468 aa20.29■□□□□ 0.84
TNFRSF1A-216ENST00000543995 TMF1P82094 1093 aa20.27■□□□□ 0.84
TNFRSF1A-216ENST00000543995 CABP2Q9NPB3 220 aa20.27■□□□□ 0.84
TNFRSF1A-216ENST00000543995 ESCO1Q5FWF5 840 aa20.27■□□□□ 0.83
TNFRSF1A-216ENST00000543995 USP32Q8NFA0 1604 aa20.26■□□□□ 0.83
TNFRSF1A-216ENST00000543995 ANKARQ7Z5J8 1434 aa20.26■□□□□ 0.83
TNFRSF1A-216ENST00000543995 ROBO1Q9Y6N7 1651 aa20.25■□□□□ 0.83
TNFRSF1A-216ENST00000543995 NUDT16Q96DE0 195 aaKnown RBP20.25■□□□□ 0.83
TNFRSF1A-216ENST00000543995 ITSN1Q15811 1721 aa20.24■□□□□ 0.83
TNFRSF1A-216ENST00000543995 PRR36Q9H6K5 1346 aa20.24■□□□□ 0.83
TNFRSF1A-216ENST00000543995 ORAI2Q96SN7 254 aa20.24■□□□□ 0.83
TNFRSF1A-216ENST00000543995 ATP7BP35670 1465 aa20.24■□□□□ 0.83
TNFRSF1A-216ENST00000543995 DISP3Q9P2K9 1392 aa20.23■□□□□ 0.83
TNFRSF1A-216ENST00000543995 BRINP3Q76B58 766 aa20.22■□□□□ 0.83
TNFRSF1A-216ENST00000543995 FBXO41Q8TF61 875 aa20.22■□□□□ 0.83
TNFRSF1A-216ENST00000543995 CDCA8Q53HL2 280 aa20.21■□□□□ 0.83
TNFRSF1A-216ENST00000543995 CCDC61Q9Y6R9 512 aa20.21■□□□□ 0.83
TNFRSF1A-216ENST00000543995 ATAD2Q6PL18 1390 aa20.2■□□□□ 0.82
TNFRSF1A-216ENST00000543995 KIF1AQ12756 1690 aa20.19■□□□□ 0.82
TNFRSF1A-216ENST00000543995 TOPAZ1Q8N9V7 1692 aa20.19■□□□□ 0.82
TNFRSF1A-216ENST00000543995 PMFBP1Q8TBY8 1022 aa20.19■□□□□ 0.82
TNFRSF1A-216ENST00000543995 PHF8Q9UPP1 1060 aa20.19■□□□□ 0.82
TNFRSF1A-216ENST00000543995 PPIP5K1Q6PFW1 1433 aa20.18■□□□□ 0.82
TNFRSF1A-216ENST00000543995 POLR3GLQ9BT43 218 aa20.17■□□□□ 0.82
TNFRSF1A-216ENST00000543995 PUS7Q96PZ0 661 aaKnown RBP20.17■□□□□ 0.82
TNFRSF1A-216ENST00000543995 FOXO3O43524 673 aa20.16■□□□□ 0.82
TNFRSF1A-216ENST00000543995 TMC1Q8TDI8 760 aa20.16■□□□□ 0.82
TNFRSF1A-216ENST00000543995 CABP1Q9NZU7 370 aa20.16■□□□□ 0.82
TNFRSF1A-216ENST00000543995 NGDNQ8NEJ9 315 aaKnown RBP20.15■□□□□ 0.82
TNFRSF1A-216ENST00000543995 DDX17Q92841 729 aaKnown RBP20.15■□□□□ 0.82
TNFRSF1A-216ENST00000543995 NHSL1Q5SYE7 1610 aa20.14■□□□□ 0.81
TNFRSF1A-216ENST00000543995 PHLPP1O60346 1717 aa20.13■□□□□ 0.81
TNFRSF1A-216ENST00000543995 NPHP3Q7Z494 1330 aa20.13■□□□□ 0.81
TNFRSF1A-216ENST00000543995 PLEKHG3A1L390 1219 aa20.12■□□□□ 0.81
TNFRSF1A-216ENST00000543995 ACEP12821 1306 aa20.12■□□□□ 0.81
TNFRSF1A-216ENST00000543995 C11orf95C9JLR9 678 aaPredicted RBP20.12■□□□□ 0.81
TNFRSF1A-216ENST00000543995 PSME1Q06323 249 aa20.12■□□□□ 0.81
TNFRSF1A-216ENST00000543995 AHDC1Q5TGY3 1603 aaPredicted RBP20.11■□□□□ 0.81
TNFRSF1A-216ENST00000543995 XPCQ01831 940 aaPredicted RBP20.11■□□□□ 0.81
TNFRSF1A-216ENST00000543995 SLC12A5Q9H2X9 1139 aa20.11■□□□□ 0.81
TNFRSF1A-216ENST00000543995 NINLQ9Y2I6 1382 aa20.09■□□□□ 0.81
TNFRSF1A-216ENST00000543995 HSPA1LP34931 641 aa20.09■□□□□ 0.81
TNFRSF1A-216ENST00000543995 KIF7Q2M1P5 1343 aa20.09■□□□□ 0.81
TNFRSF1A-216ENST00000543995 POLR3AO14802 1390 aaPredicted RBP20.09■□□□□ 0.81
TNFRSF1A-216ENST00000543995 KRT28Q7Z3Y7 464 aa20.08■□□□□ 0.81
TNFRSF1A-216ENST00000543995 MYOM1P52179 1685 aa20.07■□□□□ 0.8
TNFRSF1A-216ENST00000543995 AKAP12Q02952 1782 aa20.07■□□□□ 0.8
TNFRSF1A-216ENST00000543995 HDGFL2Q7Z4V5 671 aaPredicted RBP20.07■□□□□ 0.8
TNFRSF1A-216ENST00000543995 TERF2IPQ9NYB0 399 aa20.07■□□□□ 0.8
TNFRSF1A-216ENST00000543995 SOS2Q07890 1332 aaPredicted RBP20.06■□□□□ 0.8
TNFRSF1A-216ENST00000543995 PXDNQ92626 1479 aa20.06■□□□□ 0.8
TNFRSF1A-216ENST00000543995 COL16A1Q07092 1604 aaPredicted RBP20.06■□□□□ 0.8
TNFRSF1A-216ENST00000543995 ZNF692Q9BU19 519 aaPredicted RBP20.05■□□□□ 0.8
TNFRSF1A-216ENST00000543995 CCDC7Q96M83 1385 aa20.05■□□□□ 0.8
TNFRSF1A-216ENST00000543995 PAK3O75914 559 aaPredicted RBP20.04■□□□□ 0.8
TNFRSF1A-216ENST00000543995 WASHC2AQ641Q2 1341 aa20.04■□□□□ 0.8
TNFRSF1A-216ENST00000543995 KTN1Q86UP2 1357 aaKnown RBP20.04■□□□□ 0.8
TNFRSF1A-216ENST00000543995 CPSF1Q10570 1443 aaKnown RBP20.03■□□□□ 0.8
TNFRSF1A-216ENST00000543995 LRRC59Q96AG4 307 aaKnown RBP20.03■□□□□ 0.8
TNFRSF1A-216ENST00000543995 CD163L1Q9NR16 1453 aa20.03■□□□□ 0.8
TNFRSF1A-216ENST00000543995 USP6P35125 1406 aa20.03■□□□□ 0.8
TNFRSF1A-216ENST00000543995 A0A1W2PP64 1363 aa20.03■□□□□ 0.8
TNFRSF1A-216ENST00000543995 MON2Q7Z3U7 1717 aa20.02■□□□□ 0.8
TNFRSF1A-216ENST00000543995 ANKRD36BQ8N2N9 1353 aa20.02■□□□□ 0.79
TNFRSF1A-216ENST00000543995 TRPM3Q9HCF6 1732 aaPredicted RBP20.02■□□□□ 0.79
TNFRSF1A-216ENST00000543995 ILDR1Q86SU0 546 aaPredicted RBP20.02■□□□□ 0.79
TNFRSF1A-216ENST00000543995 LMOD2Q6P5Q4 547 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms