RNA–Protein interactions for RNA: ENST00000543916.5

CD9-210, Transcript of CD9 molecule, humanhuman

TSL 1 (best)

Gene CD9, Length 969 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD9-210ENST00000543916 PRAM1Q96QH2 718 aa21.6■■□□□ 1.05
CD9-210ENST00000543916 ROCK2O75116 1388 aaKnown RBP21.6■■□□□ 1.05
CD9-210ENST00000543916 GPRASP1Q5JY77 1395 aa21.59■■□□□ 1.05
CD9-210ENST00000543916 ADGRB2O60241 1585 aa21.57■■□□□ 1.04
CD9-210ENST00000543916 ROBO1Q9Y6N7 1651 aa21.56■■□□□ 1.04
CD9-210ENST00000543916 FMN2Q9NZ56 1722 aa21.56■■□□□ 1.04
CD9-210ENST00000543916 PIP4K2BP78356 416 aa21.56■■□□□ 1.04
CD9-210ENST00000543916 SAFB2Q14151 953 aaKnown RBP eCLIP21.56■■□□□ 1.04
CD9-210ENST00000543916 QRICH2Q9H0J4 1663 aa21.56■■□□□ 1.04
CD9-210ENST00000543916 ATF3P18847 181 aa21.55■■□□□ 1.04
CD9-210ENST00000543916 ILDR1Q86SU0 546 aaPredicted RBP21.55■■□□□ 1.04
CD9-210ENST00000543916 CADPS2Q86UW7 1296 aa21.55■■□□□ 1.04
CD9-210ENST00000543916 POGKQ9P215 609 aa21.55■■□□□ 1.04
CD9-210ENST00000543916 MST1RQ04912 1400 aa21.55■■□□□ 1.04
CD9-210ENST00000543916 SCAF1Q9H7N4 1312 aaKnown RBP21.54■■□□□ 1.04
CD9-210ENST00000543916 SLAIN2Q9P270 581 aa21.52■■□□□ 1.04
CD9-210ENST00000543916 CARD11Q9BXL7 1154 aa21.5■■□□□ 1.03
CD9-210ENST00000543916 MINK1Q8N4C8 1332 aaPredicted RBP21.5■■□□□ 1.03
CD9-210ENST00000543916 C1orf167Q5SNV9 1468 aa21.49■■□□□ 1.03
CD9-210ENST00000543916 RGPD8O14715 1765 aaPredicted RBP21.48■■□□□ 1.03
CD9-210ENST00000543916 USP32Q8NFA0 1604 aa21.48■■□□□ 1.03
CD9-210ENST00000543916 HIRIP3Q9BW71 556 aaPredicted RBP21.48■■□□□ 1.03
CD9-210ENST00000543916 CENPJQ9HC77 1338 aaPredicted RBP21.48■■□□□ 1.03
CD9-210ENST00000543916 EIF3AQ14152 1382 aaKnown RBP21.46■■□□□ 1.03
CD9-210ENST00000543916 NHSL1Q5SYE7 1610 aa21.44■■□□□ 1.02
CD9-210ENST00000543916 NUTM2FA1L443 756 aa21.43■■□□□ 1.02
CD9-210ENST00000543916 BRINP3Q76B58 766 aa21.43■■□□□ 1.02
CD9-210ENST00000543916 TULP4Q9NRJ4 1543 aa21.43■■□□□ 1.02
CD9-210ENST00000543916 PHLPP1O60346 1717 aa21.43■■□□□ 1.02
CD9-210ENST00000543916 AHDC1Q5TGY3 1603 aaPredicted RBP21.41■■□□□ 1.02
CD9-210ENST00000543916 WASLO00401 505 aaPredicted RBP21.4■■□□□ 1.02
CD9-210ENST00000543916 ANKARQ7Z5J8 1434 aa21.39■■□□□ 1.02
CD9-210ENST00000543916 ITSN1Q15811 1721 aa21.39■■□□□ 1.01
CD9-210ENST00000543916 HSPA1LP34931 641 aa21.39■■□□□ 1.01
CD9-210ENST00000543916 ORAI2Q96SN7 254 aa21.39■■□□□ 1.01
CD9-210ENST00000543916 KIF1AQ12756 1690 aa21.39■■□□□ 1.01
CD9-210ENST00000543916 TOPAZ1Q8N9V7 1692 aa21.39■■□□□ 1.01
CD9-210ENST00000543916 COL16A1Q07092 1604 aaPredicted RBP21.38■■□□□ 1.01
CD9-210ENST00000543916 ATP7BP35670 1465 aa21.38■■□□□ 1.01
CD9-210ENST00000543916 USP47Q96K76 1375 aa21.37■■□□□ 1.01
CD9-210ENST00000543916 PRR36Q9H6K5 1346 aa21.37■■□□□ 1.01
CD9-210ENST00000543916 SBNO2Q9Y2G9 1366 aa21.36■■□□□ 1.01
CD9-210ENST00000543916 ESCO1Q5FWF5 840 aa21.35■■□□□ 1.01
CD9-210ENST00000543916 CDK19Q9BWU1 502 aa21.35■■□□□ 1.01
CD9-210ENST00000543916 DDX17Q92841 729 aaKnown RBP21.34■■□□□ 1.01
CD9-210ENST00000543916 ST20-MTHFSA0A0A6YYL1 179 aa21.33■■□□□ 1.01
CD9-210ENST00000543916 EVC2Q86UK5 1308 aa21.3■■□□□ 1
CD9-210ENST00000543916 NUDT16Q96DE0 195 aaKnown RBP21.3■■□□□ 1
CD9-210ENST00000543916 TESK2Q96S53 571 aa21.3■■□□□ 1
CD9-210ENST00000543916 CABP2Q9NPB3 220 aa21.3■■□□□ 1
CD9-210ENST00000543916 PXDNQ92626 1479 aa21.29■■□□□ 1
CD9-210ENST00000543916 SRPK2P78362 688 aaKnown RBP21.29■■□□□ 1
CD9-210ENST00000543916 PHF8Q9UPP1 1060 aa21.29■■□□□ 1
CD9-210ENST00000543916 FOXO3O43524 673 aa21.27■■□□□ 1
CD9-210ENST00000543916 SHPRHQ149N8 1683 aa21.26■□□□□ 0.99
CD9-210ENST00000543916 PMFBP1Q8TBY8 1022 aa21.26■□□□□ 0.99
CD9-210ENST00000543916 NPHP3Q7Z494 1330 aa21.26■□□□□ 0.99
CD9-210ENST00000543916 PPIP5K1Q6PFW1 1433 aa21.25■□□□□ 0.99
CD9-210ENST00000543916 SOS2Q07890 1332 aaPredicted RBP21.25■□□□□ 0.99
CD9-210ENST00000543916 TRPM3Q9HCF6 1732 aaPredicted RBP21.24■□□□□ 0.99
CD9-210ENST00000543916 XPCQ01831 940 aaPredicted RBP21.24■□□□□ 0.99
CD9-210ENST00000543916 CCDC61Q9Y6R9 512 aa21.23■□□□□ 0.99
CD9-210ENST00000543916 DISP3Q9P2K9 1392 aa21.23■□□□□ 0.99
CD9-210ENST00000543916 HSPA5P11021 654 aaKnown RBP21.22■□□□□ 0.99
CD9-210ENST00000543916 EIF4G2P78344 907 aaKnown RBP eCLIP21.22■□□□□ 0.99
CD9-210ENST00000543916 ATAD2Q6PL18 1390 aa21.21■□□□□ 0.99
CD9-210ENST00000543916 POLR3AO14802 1390 aaPredicted RBP21.2■□□□□ 0.98
CD9-210ENST00000543916 JCADQ9P266 1359 aa21.2■□□□□ 0.98
CD9-210ENST00000543916 AKAP12Q02952 1782 aa21.2■□□□□ 0.98
CD9-210ENST00000543916 PLEKHG3A1L390 1219 aa21.19■□□□□ 0.98
CD9-210ENST00000543916 KRT28Q7Z3Y7 464 aa21.19■□□□□ 0.98
CD9-210ENST00000543916 NGDNQ8NEJ9 315 aaKnown RBP21.18■□□□□ 0.98
CD9-210ENST00000543916 LRRC59Q96AG4 307 aaKnown RBP21.18■□□□□ 0.98
CD9-210ENST00000543916 ACEP12821 1306 aa21.18■□□□□ 0.98
CD9-210ENST00000543916 COL22A1Q8NFW1 1626 aaPredicted RBP21.18■□□□□ 0.98
CD9-210ENST00000543916 ALS2Q96Q42 1657 aa21.18■□□□□ 0.98
CD9-210ENST00000543916 SLC24A1O60721 1099 aa21.17■□□□□ 0.98
CD9-210ENST00000543916 TMF1P82094 1093 aa21.17■□□□□ 0.98
CD9-210ENST00000543916 PSME1Q06323 249 aa21.17■□□□□ 0.98
CD9-210ENST00000543916 CABP1Q9NZU7 370 aa21.17■□□□□ 0.98
CD9-210ENST00000543916 PNPLA6Q8IY17 1366 aa21.17■□□□□ 0.98
CD9-210ENST00000543916 MYOM1P52179 1685 aa21.16■□□□□ 0.98
CD9-210ENST00000543916 TNS3Q68CZ2 1445 aa21.15■□□□□ 0.98
CD9-210ENST00000543916 PUS7Q96PZ0 661 aaKnown RBP21.15■□□□□ 0.98
CD9-210ENST00000543916 MON2Q7Z3U7 1717 aa21.15■□□□□ 0.98
CD9-210ENST00000543916 MED1Q15648 1581 aaPredicted RBP21.14■□□□□ 0.98
CD9-210ENST00000543916 SBNO1A3KN83 1393 aa21.14■□□□□ 0.98
CD9-210ENST00000543916 SPATA31A3Q5VYP0 1347 aa21.14■□□□□ 0.97
CD9-210ENST00000543916 NRKQ7Z2Y5 1582 aa21.14■□□□□ 0.97
CD9-210ENST00000543916 CD163L1Q9NR16 1453 aa21.13■□□□□ 0.97
CD9-210ENST00000543916 ABCA3Q99758 1704 aa21.12■□□□□ 0.97
CD9-210ENST00000543916 CPSF1Q10570 1443 aaKnown RBP21.12■□□□□ 0.97
CD9-210ENST00000543916 LRP6O75581 1613 aa21.11■□□□□ 0.97
CD9-210ENST00000543916 USP6P35125 1406 aa21.11■□□□□ 0.97
CD9-210ENST00000543916 CRYBG1Q9Y4K1 1723 aa21.1■□□□□ 0.97
CD9-210ENST00000543916 SPATA31A6Q5VVP1 1343 aa21.09■□□□□ 0.97
CD9-210ENST00000543916 TMC1Q8TDI8 760 aa21.09■□□□□ 0.97
CD9-210ENST00000543916 SLC12A5Q9H2X9 1139 aa21.09■□□□□ 0.97
CD9-210ENST00000543916 NINLQ9Y2I6 1382 aa21.08■□□□□ 0.96
CD9-210ENST00000543916 SSH2Q76I76 1423 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms