RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	CDK19	Q9BWU1	502 aa		14.2	□□□□□ -0.14
CPSF7-221	ENST00000543545	NWD1	Q149M9	1564 aa		14.2	□□□□□ -0.14
CPSF7-221	ENST00000543545	SETD1A	O15047	1707 aa	Known RBP	14.2	□□□□□ -0.14
CPSF7-221	ENST00000543545	EVC2	Q86UK5	1308 aa		14.19	□□□□□ -0.14
CPSF7-221	ENST00000543545	NCOA3	Q9Y6Q9	1424 aa		14.19	□□□□□ -0.14
CPSF7-221	ENST00000543545	WASL	O00401	505 aa	Predicted RBP	14.19	□□□□□ -0.14
CPSF7-221	ENST00000543545	TMF1	P82094	1093 aa		14.19	□□□□□ -0.14
CPSF7-221	ENST00000543545	CADPS2	Q86UW7	1296 aa		14.19	□□□□□ -0.14
CPSF7-221	ENST00000543545	POLR3GL	Q9BT43	218 aa		14.19	□□□□□ -0.14
CPSF7-221	ENST00000543545	TESK2	Q96S53	571 aa		14.18	□□□□□ -0.14
CPSF7-221	ENST00000543545	LTBP4	Q8N2S1	1624 aa		14.18	□□□□□ -0.14
CPSF7-221	ENST00000543545	XRN1	Q8IZH2	1706 aa	Known RBP	14.18	□□□□□ -0.14
CPSF7-221	ENST00000543545	CHD2	O14647	1828 aa	Known RBP	14.18	□□□□□ -0.14
CPSF7-221	ENST00000543545	CABP2	Q9NPB3	220 aa		14.17	□□□□□ -0.14
CPSF7-221	ENST00000543545	ADGRL3	Q9HAR2	1447 aa		14.16	□□□□□ -0.14
CPSF7-221	ENST00000543545	UBAP1L	F5GYI3	381 aa		14.16	□□□□□ -0.14
CPSF7-221	ENST00000543545	TOM1	O60784	492 aa		14.16	□□□□□ -0.14
CPSF7-221	ENST00000543545	CDCA8	Q53HL2	280 aa		14.16	□□□□□ -0.14
CPSF7-221	ENST00000543545	SLAIN2	Q9P270	581 aa		14.14	□□□□□ -0.15
CPSF7-221	ENST00000543545	STRCP1	A6NGW2	1772 aa		14.14	□□□□□ -0.15
CPSF7-221	ENST00000543545	SCAF1	Q9H7N4	1312 aa	Known RBP	14.14	□□□□□ -0.15
CPSF7-221	ENST00000543545	SBNO2	Q9Y2G9	1366 aa		14.13	□□□□□ -0.15
CPSF7-221	ENST00000543545	PIP4K2B	P78356	416 aa		14.13	□□□□□ -0.15
CPSF7-221	ENST00000543545	ESCO1	Q5FWF5	840 aa		14.13	□□□□□ -0.15
CPSF7-221	ENST00000543545	TMC1	Q8TDI8	760 aa		14.13	□□□□□ -0.15
CPSF7-221	ENST00000543545	NUDT16	Q96DE0	195 aa	Known RBP	14.13	□□□□□ -0.15
CPSF7-221	ENST00000543545	KNDC1	Q76NI1	1749 aa		14.12	□□□□□ -0.15
CPSF7-221	ENST00000543545	CCDC61	Q9Y6R9	512 aa		14.11	□□□□□ -0.15
CPSF7-221	ENST00000543545	DISP3	Q9P2K9	1392 aa		14.1	□□□□□ -0.15
CPSF7-221	ENST00000543545	C11orf95	C9JLR9	678 aa	Predicted RBP	14.1	□□□□□ -0.15
CPSF7-221	ENST00000543545	ORAI2	Q96SN7	254 aa		14.1	□□□□□ -0.15
CPSF7-221	ENST00000543545	ARHGEF28	Q8N1W1	1705 aa	Known RBP	14.1	□□□□□ -0.15
CPSF7-221	ENST00000543545	DCC	P43146	1447 aa		14.09	□□□□□ -0.15
CPSF7-221	ENST00000543545	PMFBP1	Q8TBY8	1022 aa		14.09	□□□□□ -0.15
CPSF7-221	ENST00000543545	PUS7	Q96PZ0	661 aa	Known RBP	14.09	□□□□□ -0.15
CPSF7-221	ENST00000543545	CABP1	Q9NZU7	370 aa		14.09	□□□□□ -0.15
CPSF7-221	ENST00000543545	PRR36	Q9H6K5	1346 aa		14.09	□□□□□ -0.15
CPSF7-221	ENST00000543545	ATAD2	Q6PL18	1390 aa		14.09	□□□□□ -0.15
CPSF7-221	ENST00000543545	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	14.08	□□□□□ -0.16
CPSF7-221	ENST00000543545	NGDN	Q8NEJ9	315 aa	Known RBP	14.08	□□□□□ -0.16
CPSF7-221	ENST00000543545	PHF8	Q9UPP1	1060 aa		14.08	□□□□□ -0.16
CPSF7-221	ENST00000543545	ZNF316	A6NFI3	1004 aa	Predicted RBP	14.07	□□□□□ -0.16
CPSF7-221	ENST00000543545	SLC12A5	Q9H2X9	1139 aa		14.07	□□□□□ -0.16
CPSF7-221	ENST00000543545	C1orf167	Q5SNV9	1468 aa		14.06	□□□□□ -0.16
CPSF7-221	ENST00000543545	KIF7	Q2M1P5	1343 aa		14.06	□□□□□ -0.16
CPSF7-221	ENST00000543545	MST1R	Q04912	1400 aa		14.06	□□□□□ -0.16
CPSF7-221	ENST00000543545	ANKAR	Q7Z5J8	1434 aa		14.06	□□□□□ -0.16
CPSF7-221	ENST00000543545	IQSEC2	Q5JU85	1478 aa		14.06	□□□□□ -0.16
CPSF7-221	ENST00000543545	FOXO3	O43524	673 aa		14.05	□□□□□ -0.16
CPSF7-221	ENST00000543545	PSME1	Q06323	249 aa		14.05	□□□□□ -0.16
CPSF7-221	ENST00000543545	BRINP3	Q76B58	766 aa		14.05	□□□□□ -0.16
CPSF7-221	ENST00000543545	TULP4	Q9NRJ4	1543 aa		14.05	□□□□□ -0.16
CPSF7-221	ENST00000543545	CDC42BPG	Q6DT37	1551 aa		14.05	□□□□□ -0.16
CPSF7-221	ENST00000543545	QRICH2	Q9H0J4	1663 aa		14.04	□□□□□ -0.16
CPSF7-221	ENST00000543545	PLEKHG3	A1L390	1219 aa		14.04	□□□□□ -0.16
CPSF7-221	ENST00000543545	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	14.04	□□□□□ -0.16
CPSF7-221	ENST00000543545	TERF2IP	Q9NYB0	399 aa		14.04	□□□□□ -0.16
CPSF7-221	ENST00000543545	WASHC2A	Q641Q2	1341 aa		14.04	□□□□□ -0.16
CPSF7-221	ENST00000543545	CCDC7	Q96M83	1385 aa		14.03	□□□□□ -0.16
CPSF7-221	ENST00000543545	PPIP5K1	Q6PFW1	1433 aa		14.03	□□□□□ -0.16
CPSF7-221	ENST00000543545	ADGRB2	O60241	1585 aa		14.03	□□□□□ -0.16
CPSF7-221	ENST00000543545	NALCN	Q8IZF0	1738 aa		14.02	□□□□□ -0.16
CPSF7-221	ENST00000543545	ACE	P12821	1306 aa		14.02	□□□□□ -0.17
CPSF7-221	ENST00000543545	XPC	Q01831	940 aa	Predicted RBP	14.02	□□□□□ -0.17
CPSF7-221	ENST00000543545	DDX17	Q92841	729 aa	Known RBP	14.02	□□□□□ -0.17
CPSF7-221	ENST00000543545	KRT28	Q7Z3Y7	464 aa		14.01	□□□□□ -0.17
CPSF7-221	ENST00000543545	ATP7B	P35670	1465 aa		14	□□□□□ -0.17
CPSF7-221	ENST00000543545	NPHP3	Q7Z494	1330 aa		14	□□□□□ -0.17
CPSF7-221	ENST00000543545	PAK3	O75914	559 aa	Predicted RBP	14	□□□□□ -0.17
CPSF7-221	ENST00000543545	ZNF692	Q9BU19	519 aa	Predicted RBP	14	□□□□□ -0.17
CPSF7-221	ENST00000543545	PANK3	Q9H999	370 aa		14	□□□□□ -0.17
CPSF7-221	ENST00000543545	NINL	Q9Y2I6	1382 aa		13.99	□□□□□ -0.17
CPSF7-221	ENST00000543545	LMOD2	Q6P5Q4	547 aa		13.99	□□□□□ -0.17
CPSF7-221	ENST00000543545	DDX10	Q13206	875 aa	Known RBP	13.98	□□□□□ -0.17
CPSF7-221	ENST00000543545	XIRP1	Q702N8	1843 aa	Known RBP	13.98	□□□□□ -0.17
CPSF7-221	ENST00000543545	FBXO41	Q8TF61	875 aa		13.97	□□□□□ -0.17
CPSF7-221	ENST00000543545	KTN1	Q86UP2	1357 aa	Known RBP	13.96	□□□□□ -0.17
CPSF7-221	ENST00000543545	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	13.96	□□□□□ -0.17
CPSF7-221	ENST00000543545	FMN2	Q9NZ56	1722 aa		13.95	□□□□□ -0.18
CPSF7-221	ENST00000543545	PLEKHG5	O94827	1062 aa		13.95	□□□□□ -0.18
CPSF7-221	ENST00000543545	KNSTRN	Q9Y448	316 aa		13.95	□□□□□ -0.18
CPSF7-221	ENST00000543545	POLR3A	O14802	1390 aa	Predicted RBP	13.95	□□□□□ -0.18
CPSF7-221	ENST00000543545	ANKRD36B	Q8N2N9	1353 aa		13.95	□□□□□ -0.18
CPSF7-221	ENST00000543545	HSPA1L	P34931	641 aa		13.94	□□□□□ -0.18
CPSF7-221	ENST00000543545	LRRC59	Q96AG4	307 aa	Known RBP	13.94	□□□□□ -0.18
CPSF7-221	ENST00000543545		A0A1W2PP64	1363 aa		13.94	□□□□□ -0.18
CPSF7-221	ENST00000543545	CNGB1	Q14028	1251 aa	Predicted RBP	13.93	□□□□□ -0.18
CPSF7-221	ENST00000543545	ABTB2	Q8N961	1025 aa		13.93	□□□□□ -0.18
CPSF7-221	ENST00000543545	CARD14	Q9BXL6	1004 aa		13.93	□□□□□ -0.18
CPSF7-221	ENST00000543545	SOS2	Q07890	1332 aa	Predicted RBP	13.92	□□□□□ -0.18
CPSF7-221	ENST00000543545	TTC21B	Q7Z4L5	1316 aa		13.92	□□□□□ -0.18
CPSF7-221	ENST00000543545	CPSF1	Q10570	1443 aa	Known RBP	13.92	□□□□□ -0.18
CPSF7-221	ENST00000543545	NUTM2G	Q5VZR2	741 aa		13.92	□□□□□ -0.18
CPSF7-221	ENST00000543545	USP32	Q8NFA0	1604 aa		13.92	□□□□□ -0.18
CPSF7-221	ENST00000543545	USP6	P35125	1406 aa		13.91	□□□□□ -0.18
CPSF7-221	ENST00000543545	NLRP6	P59044	892 aa		13.9	□□□□□ -0.18
CPSF7-221	ENST00000543545	NME9	Q86XW9	330 aa		13.9	□□□□□ -0.18
CPSF7-221	ENST00000543545	NSD3	Q9BZ95	1437 aa		13.9	□□□□□ -0.19
CPSF7-221	ENST00000543545	CGNL1	Q0VF96	1302 aa		13.9	□□□□□ -0.19
CPSF7-221	ENST00000543545	SPATA31A3	Q5VYP0	1347 aa		13.9	□□□□□ -0.19

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