RNA–Protein interactions for RNA: ENST00000542337.5

DDB1-220, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 3

Gene DDB1, Length 558 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-220ENST00000542337 SHPRHQ149N8 1683 aa29.65■■■□□ 2.34
DDB1-220ENST00000542337 DHX57Q6P158 1386 aaKnown RBP29.64■■■□□ 2.33
DDB1-220ENST00000542337 YTHDC2Q9H6S0 1430 aaKnown RBP29.63■■■□□ 2.33
DDB1-220ENST00000542337 ESCO1Q5FWF5 840 aa29.63■■■□□ 2.33
DDB1-220ENST00000542337 CFAP70Q5T0N1 1121 aa29.63■■■□□ 2.33
DDB1-220ENST00000542337 SIRT1Q96EB6 747 aa29.63■■■□□ 2.33
DDB1-220ENST00000542337 NHSL1Q5SYE7 1610 aa29.63■■■□□ 2.33
DDB1-220ENST00000542337 MYOM2P54296 1465 aa29.62■■■□□ 2.33
DDB1-220ENST00000542337 LRP6O75581 1613 aa29.62■■■□□ 2.33
DDB1-220ENST00000542337 STAC3Q96MF2 364 aa29.59■■■□□ 2.33
DDB1-220ENST00000542337 NRXN1Q9ULB1 1477 aa29.59■■■□□ 2.33
DDB1-220ENST00000542337 SOS2Q07890 1332 aaPredicted RBP29.58■■■□□ 2.33
DDB1-220ENST00000542337 KDM2AQ9Y2K7 1162 aa29.58■■■□□ 2.33
DDB1-220ENST00000542337 DCAF11Q8TEB1 546 aa29.57■■■□□ 2.32
DDB1-220ENST00000542337 CDC42BPGQ6DT37 1551 aa29.56■■■□□ 2.32
DDB1-220ENST00000542337 PNPLA6Q8IY17 1366 aa29.56■■■□□ 2.32
DDB1-220ENST00000542337 NPHP3Q7Z494 1330 aa29.56■■■□□ 2.32
DDB1-220ENST00000542337 PLEKHH1Q9ULM0 1364 aa29.55■■■□□ 2.32
DDB1-220ENST00000542337 NUTM2FA1L443 756 aa29.55■■■□□ 2.32
DDB1-220ENST00000542337 POGKQ9P215 609 aa29.53■■■□□ 2.32
DDB1-220ENST00000542337 KNDC1Q76NI1 1749 aa29.52■■■□□ 2.32
DDB1-220ENST00000542337 LAMC1P11047 1609 aa29.52■■■□□ 2.32
DDB1-220ENST00000542337 PRAM1Q96QH2 718 aa29.51■■■□□ 2.31
DDB1-220ENST00000542337 FOXO3O43524 673 aa29.5■■■□□ 2.31
DDB1-220ENST00000542337 C8orf37Q96NL8 207 aa29.5■■■□□ 2.31
DDB1-220ENST00000542337 AFF2P51816 1311 aa29.49■■■□□ 2.31
DDB1-220ENST00000542337 SAFB2Q14151 953 aaKnown RBP eCLIP29.48■■■□□ 2.31
DDB1-220ENST00000542337 ADAMTS2O95450 1211 aa29.47■■■□□ 2.31
DDB1-220ENST00000542337 RXRBP28702 533 aa29.47■■■□□ 2.31
DDB1-220ENST00000542337 NGLY1Q96IV0 654 aa29.45■■■□□ 2.31
DDB1-220ENST00000542337 TRAK1Q9UPV9 953 aa29.44■■■□□ 2.3
DDB1-220ENST00000542337 XPCQ01831 940 aaPredicted RBP29.43■■■□□ 2.3
DDB1-220ENST00000542337 DLC1Q96QB1 1528 aa29.4■■■□□ 2.3
DDB1-220ENST00000542337 QTRT2Q9H974 415 aaKnown RBP29.39■■■□□ 2.3
DDB1-220ENST00000542337 PHF8Q9UPP1 1060 aa29.39■■■□□ 2.3
DDB1-220ENST00000542337 PXDNQ92626 1479 aa29.37■■■□□ 2.29
DDB1-220ENST00000542337 PSME1Q06323 249 aa29.37■■■□□ 2.29
DDB1-220ENST00000542337 KRT28Q7Z3Y7 464 aa29.37■■■□□ 2.29
DDB1-220ENST00000542337 FMN2Q9NZ56 1722 aa29.37■■■□□ 2.29
DDB1-220ENST00000542337 ADGRB1O14514 1584 aa29.35■■■□□ 2.29
DDB1-220ENST00000542337 RBM6P78332 1123 aaKnown RBP29.33■■■□□ 2.29
DDB1-220ENST00000542337 USP21Q9UK80 565 aa29.33■■■□□ 2.29
DDB1-220ENST00000542337 HIRIP3Q9BW71 556 aaPredicted RBP29.32■■■□□ 2.28
DDB1-220ENST00000542337 KIF1AQ12756 1690 aa29.31■■■□□ 2.28
DDB1-220ENST00000542337 EIF3AQ14152 1382 aaKnown RBP29.31■■■□□ 2.28
DDB1-220ENST00000542337 SPATA31A3Q5VYP0 1347 aa29.31■■■□□ 2.28
DDB1-220ENST00000542337 MINK1Q8N4C8 1332 aaPredicted RBP29.31■■■□□ 2.28
DDB1-220ENST00000542337 ANKARQ7Z5J8 1434 aa29.29■■■□□ 2.28
DDB1-220ENST00000542337 FNBP4Q8N3X1 1017 aaPredicted RBP29.29■■■□□ 2.28
DDB1-220ENST00000542337 CDK12Q9NYV4 1490 aaPredicted RBP29.29■■■□□ 2.28
DDB1-220ENST00000542337 COL22A1Q8NFW1 1626 aaPredicted RBP29.28■■■□□ 2.28
DDB1-220ENST00000542337 TRPC5Q9UL62 973 aaPredicted RBP29.28■■■□□ 2.28
DDB1-220ENST00000542337 WASLO00401 505 aaPredicted RBP29.26■■■□□ 2.27
DDB1-220ENST00000542337 HAP1P54257 671 aaPredicted RBP29.26■■■□□ 2.27
DDB1-220ENST00000542337 PMFBP1Q8TBY8 1022 aa29.26■■■□□ 2.27
DDB1-220ENST00000542337 LMOD2Q6P5Q4 547 aa29.25■■■□□ 2.27
DDB1-220ENST00000542337 ADGRB2O60241 1585 aa29.22■■■□□ 2.27
DDB1-220ENST00000542337 SBNO1A3KN83 1393 aa29.22■■■□□ 2.27
DDB1-220ENST00000542337 TNS3Q68CZ2 1445 aa29.2■■■□□ 2.27
DDB1-220ENST00000542337 GPRASP1Q5JY77 1395 aa29.2■■■□□ 2.26
DDB1-220ENST00000542337 ARHGEF10O15013 1369 aa29.19■■■□□ 2.26
DDB1-220ENST00000542337 NGDNQ8NEJ9 315 aaKnown RBP29.18■■■□□ 2.26
DDB1-220ENST00000542337 RGPD8O14715 1765 aaPredicted RBP29.17■■■□□ 2.26
DDB1-220ENST00000542337 UPF1Q92900 1129 aaKnown RBP eCLIP29.17■■■□□ 2.26
DDB1-220ENST00000542337 PLEKHG5O94827 1062 aa29.16■■■□□ 2.26
DDB1-220ENST00000542337 PRR36Q9H6K5 1346 aa29.16■■■□□ 2.26
DDB1-220ENST00000542337 TULP4Q9NRJ4 1543 aa29.15■■■□□ 2.26
DDB1-220ENST00000542337 NBPF1Q3BBV0 1214 aa29.14■■■□□ 2.26
DDB1-220ENST00000542337 RGS12O14924 1447 aa29.13■■■□□ 2.25
DDB1-220ENST00000542337 ATRNO75882 1429 aa29.13■■■□□ 2.25
DDB1-220ENST00000542337 CABLES1Q8TDN4 633 aa29.13■■■□□ 2.25
DDB1-220ENST00000542337 NUDT16Q96DE0 195 aaKnown RBP29.13■■■□□ 2.25
DDB1-220ENST00000542337 NEUROD1Q13562 356 aa29.12■■■□□ 2.25
DDB1-220ENST00000542337 UNC5CLQ8IV45 518 aa29.12■■■□□ 2.25
DDB1-220ENST00000542337 L3MBTL2Q969R5 705 aa29.12■■■□□ 2.25
DDB1-220ENST00000542337 CDK19Q9BWU1 502 aa29.12■■■□□ 2.25
DDB1-220ENST00000542337 USP32Q8NFA0 1604 aa29.12■■■□□ 2.25
DDB1-220ENST00000542337 KIAA1210Q9ULL0 1709 aa29.11■■■□□ 2.25
DDB1-220ENST00000542337 BCL9LQ86UU0 1499 aa29.1■■■□□ 2.25
DDB1-220ENST00000542337 SIN3AQ96ST3 1273 aa29.1■■■□□ 2.25
DDB1-220ENST00000542337 PAK3O75914 559 aaPredicted RBP29.09■■■□□ 2.25
DDB1-220ENST00000542337 GJD4Q96KN9 370 aaPredicted RBP29.09■■■□□ 2.25
DDB1-220ENST00000542337 ARHGEF28Q8N1W1 1705 aaKnown RBP29.08■■■□□ 2.25
DDB1-220ENST00000542337 MARF1Q9Y4F3 1742 aaKnown RBP29.06■■■□□ 2.24
DDB1-220ENST00000542337 CENPJQ9HC77 1338 aaPredicted RBP29.05■■■□□ 2.24
DDB1-220ENST00000542337 CCDC61Q9Y6R9 512 aa29.05■■■□□ 2.24
DDB1-220ENST00000542337 SLIT2O94813 1529 aa29.03■■■□□ 2.24
DDB1-220ENST00000542337 ATAD2Q6PL18 1390 aa29.02■■■□□ 2.24
DDB1-220ENST00000542337 SRPK2P78362 688 aaKnown RBP29.01■■■□□ 2.23
DDB1-220ENST00000542337 ATP7BP35670 1465 aa29.01■■■□□ 2.23
DDB1-220ENST00000542337 FAM83GA6ND36 823 aa28.99■■■□□ 2.23
DDB1-220ENST00000542337 CCDC9Q9Y3X0 531 aaKnown RBP28.99■■■□□ 2.23
DDB1-220ENST00000542337 PLEKHG3A1L390 1219 aa28.97■■■□□ 2.23
DDB1-220ENST00000542337 VPS72Q15906 364 aa28.97■■■□□ 2.23
DDB1-220ENST00000542337 NBPF8Q3BBV2 869 aa28.97■■■□□ 2.23
DDB1-220ENST00000542337 ACEP12821 1306 aa28.96■■■□□ 2.23
DDB1-220ENST00000542337 ITSN1Q15811 1721 aa28.95■■■□□ 2.23
DDB1-220ENST00000542337 TRPM3Q9HCF6 1732 aaPredicted RBP28.94■■■□□ 2.22
DDB1-220ENST00000542337 RALGAPBQ86X10 1494 aa28.94■■■□□ 2.22
DDB1-220ENST00000542337 POLR3AO14802 1390 aaPredicted RBP28.93■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms