RNA–Protein interactions for RNA: ENST00000541576.5

THBS3-210, Transcript of thrombospondin 3, humanhuman

TSL 1 (best) BASIC

Gene THBS3, Length 3,200 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
THBS3-210ENST00000541576 TBX22Q9Y458 520 aa11.86□□□□□ -0.51
THBS3-210ENST00000541576 PUS7Q96PZ0 661 aaKnown RBP11.86□□□□□ -0.51
THBS3-210ENST00000541576 KNDC1Q76NI1 1749 aa11.86□□□□□ -0.51
THBS3-210ENST00000541576 WAPLQ7Z5K2 1190 aa11.85□□□□□ -0.51
THBS3-210ENST00000541576 SIRT1Q96EB6 747 aa11.85□□□□□ -0.51
THBS3-210ENST00000541576 DIP2AQ14689 1571 aa11.85□□□□□ -0.51
THBS3-210ENST00000541576 PLEKHH1Q9ULM0 1364 aa11.84□□□□□ -0.51
THBS3-210ENST00000541576 CPS1P31327 1500 aa11.84□□□□□ -0.51
THBS3-210ENST00000541576 FAM135BQ49AJ0 1406 aa11.84□□□□□ -0.51
THBS3-210ENST00000541576 CABP2Q9NPB3 220 aa11.83□□□□□ -0.52
THBS3-210ENST00000541576 SRPK2P78362 688 aaKnown RBP11.83□□□□□ -0.52
THBS3-210ENST00000541576 TMC1Q8TDI8 760 aa11.83□□□□□ -0.52
THBS3-210ENST00000541576 KNSTRNQ9Y448 316 aa11.83□□□□□ -0.52
THBS3-210ENST00000541576 KTN1Q86UP2 1357 aaKnown RBP11.83□□□□□ -0.52
THBS3-210ENST00000541576 SUPT16HQ9Y5B9 1047 aaKnown RBP11.82□□□□□ -0.52
THBS3-210ENST00000541576 ROBO2Q9HCK4 1378 aa11.82□□□□□ -0.52
THBS3-210ENST00000541576 PTPRUQ92729 1446 aa11.82□□□□□ -0.52
THBS3-210ENST00000541576 RALBP1Q15311 655 aa11.82□□□□□ -0.52
THBS3-210ENST00000541576 ANP32EQ9BTT0 268 aa11.81□□□□□ -0.52
THBS3-210ENST00000541576 AMOTL2Q9Y2J4 779 aa11.81□□□□□ -0.52
THBS3-210ENST00000541576 KDM4FA0A1W2PPD8 638 aa11.81□□□□□ -0.52
THBS3-210ENST00000541576 CDK19Q9BWU1 502 aa11.81□□□□□ -0.52
THBS3-210ENST00000541576 SLC12A5Q9H2X9 1139 aa11.81□□□□□ -0.52
THBS3-210ENST00000541576 ATAD2Q6PL18 1390 aa11.8□□□□□ -0.52
THBS3-210ENST00000541576 CC2D1BQ5T0F9 858 aaKnown RBP11.8□□□□□ -0.52
THBS3-210ENST00000541576 PIK3R4Q99570 1358 aa11.8□□□□□ -0.52
THBS3-210ENST00000541576 PARD3Q8TEW0 1356 aa11.79□□□□□ -0.52
THBS3-210ENST00000541576 NINLQ9Y2I6 1382 aa11.79□□□□□ -0.52
THBS3-210ENST00000541576 MRS2Q9HD23 443 aa11.79□□□□□ -0.52
THBS3-210ENST00000541576 NPHP4O75161 1426 aaPredicted RBP11.79□□□□□ -0.52
THBS3-210ENST00000541576 PTCH1Q13635 1447 aa11.79□□□□□ -0.52
THBS3-210ENST00000541576 AMER1Q5JTC6 1135 aaPredicted RBP11.79□□□□□ -0.52
THBS3-210ENST00000541576 CARD14Q9BXL6 1004 aa11.79□□□□□ -0.52
THBS3-210ENST00000541576 TSHZ2Q9NRE2 1034 aa11.79□□□□□ -0.52
THBS3-210ENST00000541576 MYBBP1AQ9BQG0 1328 aaKnown RBP11.78□□□□□ -0.52
THBS3-210ENST00000541576 WASLO00401 505 aaPredicted RBP11.78□□□□□ -0.52
THBS3-210ENST00000541576 ANKRD36BQ8N2N9 1353 aa11.77□□□□□ -0.53
THBS3-210ENST00000541576 NPC1L1Q9UHC9 1359 aa11.77□□□□□ -0.53
THBS3-210ENST00000541576 XRN1Q8IZH2 1706 aaKnown RBP11.77□□□□□ -0.53
THBS3-210ENST00000541576 NCKAP5LQ9HCH0 1330 aa11.77□□□□□ -0.53
THBS3-210ENST00000541576 NSD3Q9BZ95 1437 aa11.76□□□□□ -0.53
THBS3-210ENST00000541576 KCNA6P17658 529 aa11.76□□□□□ -0.53
THBS3-210ENST00000541576 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.75□□□□□ -0.53
THBS3-210ENST00000541576 ADGRB2O60241 1585 aa11.75□□□□□ -0.53
THBS3-210ENST00000541576 TERF2IPQ9NYB0 399 aa11.75□□□□□ -0.53
THBS3-210ENST00000541576 NLRP13Q86W25 1043 aa11.74□□□□□ -0.53
THBS3-210ENST00000541576 FAM9BQ8IZU0 186 aa11.74□□□□□ -0.53
THBS3-210ENST00000541576 CHD2O14647 1828 aaKnown RBP11.74□□□□□ -0.53
THBS3-210ENST00000541576 A0A1W2PP64 1363 aa11.74□□□□□ -0.53
THBS3-210ENST00000541576 BRD4O60885 1362 aaPredicted RBP11.74□□□□□ -0.53
THBS3-210ENST00000541576 CABP1Q9NZU7 370 aa11.74□□□□□ -0.53
THBS3-210ENST00000541576 NUDT16Q96DE0 195 aaKnown RBP11.73□□□□□ -0.53
THBS3-210ENST00000541576 HDGFL2Q7Z4V5 671 aaPredicted RBP11.73□□□□□ -0.53
THBS3-210ENST00000541576 CGNL1Q0VF96 1302 aa11.72□□□□□ -0.53
THBS3-210ENST00000541576 HSPA2P54652 639 aa11.72□□□□□ -0.53
THBS3-210ENST00000541576 USP32Q8NFA0 1604 aa11.72□□□□□ -0.53
THBS3-210ENST00000541576 CD163L1Q9NR16 1453 aa11.72□□□□□ -0.53
THBS3-210ENST00000541576 CCDC61Q9Y6R9 512 aa11.72□□□□□ -0.53
THBS3-210ENST00000541576 PPIP5K1Q6PFW1 1433 aa11.72□□□□□ -0.53
THBS3-210ENST00000541576 PNISRQ8TF01 805 aaKnown RBP11.71□□□□□ -0.53
THBS3-210ENST00000541576 ATP7BP35670 1465 aa11.71□□□□□ -0.53
THBS3-210ENST00000541576 LMTK3Q96Q04 1460 aa11.7□□□□□ -0.54
THBS3-210ENST00000541576 PRR36Q9H6K5 1346 aa11.7□□□□□ -0.54
THBS3-210ENST00000541576 PPP2R1AP30153 589 aa11.7□□□□□ -0.54
THBS3-210ENST00000541576 NSD2O96028 1365 aa11.69□□□□□ -0.54
THBS3-210ENST00000541576 HNRNPUQ00839 825 aaKnown RBP eCLIP11.69□□□□□ -0.54
THBS3-210ENST00000541576 NUTM2FA1L443 756 aa11.68□□□□□ -0.54
THBS3-210ENST00000541576 MORC1Q86VD1 984 aa11.68□□□□□ -0.54
THBS3-210ENST00000541576 NWD1Q149M9 1564 aa11.68□□□□□ -0.54
THBS3-210ENST00000541576 FKBP8Q14318 412 aa11.67□□□□□ -0.54
THBS3-210ENST00000541576 CPSF1Q10570 1443 aaKnown RBP11.67□□□□□ -0.54
THBS3-210ENST00000541576 CDC42BPGQ6DT37 1551 aa11.67□□□□□ -0.54
THBS3-210ENST00000541576 TOPAZ1Q8N9V7 1692 aa11.66□□□□□ -0.54
THBS3-210ENST00000541576 RBM33Q96EV2 1170 aaKnown RBP11.66□□□□□ -0.54
THBS3-210ENST00000541576 PLEKHG3A1L390 1219 aa11.65□□□□□ -0.54
THBS3-210ENST00000541576 ADGRL3Q9HAR2 1447 aa11.65□□□□□ -0.54
THBS3-210ENST00000541576 FYB1O15117 783 aa11.65□□□□□ -0.54
THBS3-210ENST00000541576 ZNF692Q9BU19 519 aaPredicted RBP11.65□□□□□ -0.54
THBS3-210ENST00000541576 NALCNQ8IZF0 1738 aa11.65□□□□□ -0.54
THBS3-210ENST00000541576 EDC4Q6P2E9 1401 aaKnown RBP11.65□□□□□ -0.54
THBS3-210ENST00000541576 ANKARQ7Z5J8 1434 aa11.65□□□□□ -0.54
THBS3-210ENST00000541576 GGNBP2Q9H3C7 697 aa11.65□□□□□ -0.54
THBS3-210ENST00000541576 ITSN1Q15811 1721 aa11.64□□□□□ -0.55
THBS3-210ENST00000541576 NKTRP30414 1462 aaKnown RBP11.64□□□□□ -0.55
THBS3-210ENST00000541576 TNNT2P45379 298 aaPredicted RBP11.64□□□□□ -0.55
THBS3-210ENST00000541576 C14orf37Q86TY3 774 aa11.64□□□□□ -0.55
THBS3-210ENST00000541576 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.64□□□□□ -0.55
THBS3-210ENST00000541576 PROSER2Q86WR7 435 aaPredicted RBP11.64□□□□□ -0.55
THBS3-210ENST00000541576 ACEP12821 1306 aa11.64□□□□□ -0.55
THBS3-210ENST00000541576 FMN2Q9NZ56 1722 aa11.64□□□□□ -0.55
THBS3-210ENST00000541576 AKAP12Q02952 1782 aa11.63□□□□□ -0.55
THBS3-210ENST00000541576 MON2Q7Z3U7 1717 aa11.63□□□□□ -0.55
THBS3-210ENST00000541576 STRCQ7RTU9 1775 aa11.63□□□□□ -0.55
THBS3-210ENST00000541576 KIF20BQ96Q89 1820 aa11.63□□□□□ -0.55
THBS3-210ENST00000541576 SENP3-EIF4A1A0A087X0R7 540 aa11.63□□□□□ -0.55
THBS3-210ENST00000541576 ANKRD26Q9UPS8 1709 aa11.62□□□□□ -0.55
THBS3-210ENST00000541576 RGPD8O14715 1765 aaPredicted RBP11.62□□□□□ -0.55
THBS3-210ENST00000541576 PMFBP1Q8TBY8 1022 aa11.62□□□□□ -0.55
THBS3-210ENST00000541576 NGDNQ8NEJ9 315 aaKnown RBP11.61□□□□□ -0.55
THBS3-210ENST00000541576 POLR3AO14802 1390 aaPredicted RBP11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms