RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 NPC1L1Q9UHC9 1359 aa19.42■□□□□ 0.7
CLIP1-216ENST00000541410 CDCA7LQ96GN5 454 aa19.41■□□□□ 0.7
CLIP1-216ENST00000541410 PLEKHH1Q9ULM0 1364 aa19.4■□□□□ 0.7
CLIP1-216ENST00000541410 MORC1Q86VD1 984 aa19.39■□□□□ 0.69
CLIP1-216ENST00000541410 CCDC146Q8IYE0 955 aa19.39■□□□□ 0.69
CLIP1-216ENST00000541410 METP08581 1390 aa19.38■□□□□ 0.69
CLIP1-216ENST00000541410 BLMP54132 1417 aaPredicted RBP19.38■□□□□ 0.69
CLIP1-216ENST00000541410 TXNDC2Q86VQ3 553 aa19.37■□□□□ 0.69
CLIP1-216ENST00000541410 CDK19Q9BWU1 502 aa19.37■□□□□ 0.69
CLIP1-216ENST00000541410 SETD1AO15047 1707 aaKnown RBP19.37■□□□□ 0.69
CLIP1-216ENST00000541410 NRXN3Q9Y4C0 1643 aa19.36■□□□□ 0.69
CLIP1-216ENST00000541410 UBR1Q8IWV7 1749 aa19.35■□□□□ 0.69
CLIP1-216ENST00000541410 CGNL1Q0VF96 1302 aa19.35■□□□□ 0.69
CLIP1-216ENST00000541410 A0A1W2PP64 1363 aa19.34■□□□□ 0.69
CLIP1-216ENST00000541410 ANKRD36BQ8N2N9 1353 aa19.34■□□□□ 0.69
CLIP1-216ENST00000541410 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.34■□□□□ 0.69
CLIP1-216ENST00000541410 LTKP29376 864 aa19.33■□□□□ 0.68
CLIP1-216ENST00000541410 TMEM2Q9UHN6 1383 aa19.32■□□□□ 0.68
CLIP1-216ENST00000541410 CABP1Q9NZU7 370 aa19.32■□□□□ 0.68
CLIP1-216ENST00000541410 GGNBP2Q9H3C7 697 aa19.32■□□□□ 0.68
CLIP1-216ENST00000541410 C3P01024 1663 aa19.31■□□□□ 0.68
CLIP1-216ENST00000541410 PUS7Q96PZ0 661 aaKnown RBP19.31■□□□□ 0.68
CLIP1-216ENST00000541410 FER1L4A9Z1Z3 1794 aa19.3■□□□□ 0.68
CLIP1-216ENST00000541410 MTHFSP49914 203 aa19.29■□□□□ 0.68
CLIP1-216ENST00000541410 PELP1Q8IZL8 1130 aaKnown RBP19.29■□□□□ 0.68
CLIP1-216ENST00000541410 HDGFP51858 240 aaKnown RBP19.29■□□□□ 0.68
CLIP1-216ENST00000541410 SLC26A8Q96RN1 970 aa19.29■□□□□ 0.68
CLIP1-216ENST00000541410 ATAD2Q6PL18 1390 aa19.28■□□□□ 0.68
CLIP1-216ENST00000541410 B4GALNT3Q6L9W6 998 aa19.28■□□□□ 0.68
CLIP1-216ENST00000541410 ABCC11Q96J66 1382 aa19.27■□□□□ 0.68
CLIP1-216ENST00000541410 NCKAP5LQ9HCH0 1330 aa19.27■□□□□ 0.68
CLIP1-216ENST00000541410 APAF1O14727 1248 aa19.27■□□□□ 0.68
CLIP1-216ENST00000541410 CD163L1Q9NR16 1453 aa19.26■□□□□ 0.67
CLIP1-216ENST00000541410 TERF2IPQ9NYB0 399 aa19.26■□□□□ 0.67
CLIP1-216ENST00000541410 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.26■□□□□ 0.67
CLIP1-216ENST00000541410 USP32Q8NFA0 1604 aa19.25■□□□□ 0.67
CLIP1-216ENST00000541410 PDE3BQ13370 1112 aa19.25■□□□□ 0.67
CLIP1-216ENST00000541410 RCAN3Q9UKA8 241 aa19.25■□□□□ 0.67
CLIP1-216ENST00000541410 INSRP06213 1382 aa19.25■□□□□ 0.67
CLIP1-216ENST00000541410 DLC1Q96QB1 1528 aa19.24■□□□□ 0.67
CLIP1-216ENST00000541410 PPP4R2Q9NY27 417 aa19.24■□□□□ 0.67
CLIP1-216ENST00000541410 FYB1O15117 783 aa19.24■□□□□ 0.67
CLIP1-216ENST00000541410 POLR3AO14802 1390 aaPredicted RBP19.23■□□□□ 0.67
CLIP1-216ENST00000541410 NUTM2FA1L443 756 aa19.23■□□□□ 0.67
CLIP1-216ENST00000541410 HDGFL2Q7Z4V5 671 aaPredicted RBP19.23■□□□□ 0.67
CLIP1-216ENST00000541410 RNF123Q5XPI4 1314 aa19.23■□□□□ 0.67
CLIP1-216ENST00000541410 FBLN1P23142 703 aa19.22■□□□□ 0.67
CLIP1-216ENST00000541410 ADAMTS13Q76LX8 1427 aa19.22■□□□□ 0.67
CLIP1-216ENST00000541410 NLRP1Q9C000 1473 aa19.22■□□□□ 0.67
CLIP1-216ENST00000541410 NINLQ9Y2I6 1382 aa19.22■□□□□ 0.67
CLIP1-216ENST00000541410 WASLO00401 505 aaPredicted RBP19.22■□□□□ 0.67
CLIP1-216ENST00000541410 NEUROD2Q15784 382 aa19.22■□□□□ 0.67
CLIP1-216ENST00000541410 SHPRHQ149N8 1683 aa19.21■□□□□ 0.67
CLIP1-216ENST00000541410 ROBO2Q9HCK4 1378 aa19.21■□□□□ 0.67
CLIP1-216ENST00000541410 TSHZ2Q9NRE2 1034 aa19.21■□□□□ 0.67
CLIP1-216ENST00000541410 EID1Q9Y6B2 187 aa19.2■□□□□ 0.66
CLIP1-216ENST00000541410 RRP7AQ9Y3A4 280 aaKnown RBP19.2■□□□□ 0.66
CLIP1-216ENST00000541410 PLIN1O60240 522 aa19.19■□□□□ 0.66
CLIP1-216ENST00000541410 SPINK5Q9NQ38 1064 aaPredicted RBP19.19■□□□□ 0.66
CLIP1-216ENST00000541410 RRP1P56182 461 aaKnown RBP19.18■□□□□ 0.66
CLIP1-216ENST00000541410 DMRT2Q9Y5R5 561 aa19.18■□□□□ 0.66
CLIP1-216ENST00000541410 NSD2O96028 1365 aa19.18■□□□□ 0.66
CLIP1-216ENST00000541410 ERICH6BQ5W0A0 696 aa19.18■□□□□ 0.66
CLIP1-216ENST00000541410 NUDT16Q96DE0 195 aaKnown RBP19.18■□□□□ 0.66
CLIP1-216ENST00000541410 ZNF521Q96K83 1311 aa19.18■□□□□ 0.66
CLIP1-216ENST00000541410 PLEKHG1Q9ULL1 1385 aa19.18■□□□□ 0.66
CLIP1-216ENST00000541410 GOLGA2Q08379 1002 aa19.17■□□□□ 0.66
CLIP1-216ENST00000541410 CFAP53Q96M91 514 aa19.17■□□□□ 0.66
CLIP1-216ENST00000541410 PPIP5K1Q6PFW1 1433 aa19.17■□□□□ 0.66
CLIP1-216ENST00000541410 DUSP27Q5VZP5 1158 aa19.15■□□□□ 0.66
CLIP1-216ENST00000541410 KNDC1Q76NI1 1749 aa19.15■□□□□ 0.66
CLIP1-216ENST00000541410 PPM1GO15355 546 aaPredicted RBP19.15■□□□□ 0.66
CLIP1-216ENST00000541410 U2AF1L5P0DN76 240 aaPredicted RBP19.15■□□□□ 0.66
CLIP1-216ENST00000541410 U2AF1Q01081 240 aaKnown RBP eCLIP19.15■□□□□ 0.66
CLIP1-216ENST00000541410 ZRANB1Q9UGI0 708 aa19.15■□□□□ 0.66
CLIP1-216ENST00000541410 RIMS1Q86UR5 1692 aaKnown RBP19.15■□□□□ 0.66
CLIP1-216ENST00000541410 PTPRUQ92729 1446 aa19.15■□□□□ 0.66
CLIP1-216ENST00000541410 PRR36Q9H6K5 1346 aa19.14■□□□□ 0.65
CLIP1-216ENST00000541410 THEMISQ8N1K5 641 aaPredicted RBP19.14■□□□□ 0.65
CLIP1-216ENST00000541410 TECPR2O15040 1411 aa19.14■□□□□ 0.65
CLIP1-216ENST00000541410 FAM135BQ49AJ0 1406 aa19.14■□□□□ 0.65
CLIP1-216ENST00000541410 CPS1P31327 1500 aa19.13■□□□□ 0.65
CLIP1-216ENST00000541410 U2SURPO15042 1029 aaKnown RBP19.13■□□□□ 0.65
CLIP1-216ENST00000541410 AMOTL2Q9Y2J4 779 aa19.13■□□□□ 0.65
CLIP1-216ENST00000541410 KIF20BQ96Q89 1820 aa19.13■□□□□ 0.65
CLIP1-216ENST00000541410 NME9Q86XW9 330 aa19.13■□□□□ 0.65
CLIP1-216ENST00000541410 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.13■□□□□ 0.65
CLIP1-216ENST00000541410 EXOC6Q8TAG9 804 aa19.12■□□□□ 0.65
CLIP1-216ENST00000541410 ANKRD26Q9UPS8 1709 aa19.12■□□□□ 0.65
CLIP1-216ENST00000541410 TCP11L2Q8N4U5 519 aa19.12■□□□□ 0.65
CLIP1-216ENST00000541410 CCDC61Q9Y6R9 512 aa19.12■□□□□ 0.65
CLIP1-216ENST00000541410 SLFN5Q08AF3 891 aa19.11■□□□□ 0.65
CLIP1-216ENST00000541410 RUNDC1Q96C34 613 aa19.11■□□□□ 0.65
CLIP1-216ENST00000541410 ATP7BP35670 1465 aa19.1■□□□□ 0.65
CLIP1-216ENST00000541410 SLIT1O75093 1534 aa19.1■□□□□ 0.65
CLIP1-216ENST00000541410 ARHGAP23Q9P227 1491 aa19.1■□□□□ 0.65
CLIP1-216ENST00000541410 SIRT1Q96EB6 747 aa19.1■□□□□ 0.65
CLIP1-216ENST00000541410 CCDC136Q96JN2 1154 aa19.1■□□□□ 0.65
CLIP1-216ENST00000541410 WWC1Q8IX03 1113 aa19.09■□□□□ 0.65
CLIP1-216ENST00000541410 DNAJC5Q9H3Z4 198 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms