RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 MINK1Q8N4C8 1332 aaPredicted RBP24.36■■□□□ 1.49
CLIP1-215ENST00000541108 ROBO2Q9HCK4 1378 aa24.36■■□□□ 1.49
CLIP1-215ENST00000541108 PER1O15534 1290 aaPredicted RBP24.36■■□□□ 1.49
CLIP1-215ENST00000541108 PTCH1Q13635 1447 aa24.36■■□□□ 1.49
CLIP1-215ENST00000541108 MYOM1P52179 1685 aa24.35■■□□□ 1.49
CLIP1-215ENST00000541108 XRN1Q8IZH2 1706 aaKnown RBP24.33■■□□□ 1.49
CLIP1-215ENST00000541108 NCKAP5LQ9HCH0 1330 aa24.33■■□□□ 1.49
CLIP1-215ENST00000541108 PRKRIP1Q9H875 184 aaPredicted RBP24.33■■□□□ 1.49
CLIP1-215ENST00000541108 LMTK3Q96Q04 1460 aa24.32■■□□□ 1.48
CLIP1-215ENST00000541108 ATAD2Q6PL18 1390 aa24.32■■□□□ 1.48
CLIP1-215ENST00000541108 CHD2O14647 1828 aaKnown RBP24.31■■□□□ 1.48
CLIP1-215ENST00000541108 CCER2I3L3R5 266 aa24.31■■□□□ 1.48
CLIP1-215ENST00000541108 NINLQ9Y2I6 1382 aa24.31■■□□□ 1.48
CLIP1-215ENST00000541108 SRPK2P78362 688 aaKnown RBP24.3■■□□□ 1.48
CLIP1-215ENST00000541108 CDK19Q9BWU1 502 aa24.3■■□□□ 1.48
CLIP1-215ENST00000541108 CABP2Q9NPB3 220 aa24.3■■□□□ 1.48
CLIP1-215ENST00000541108 KTN1Q86UP2 1357 aaKnown RBP24.29■■□□□ 1.48
CLIP1-215ENST00000541108 WASLO00401 505 aaPredicted RBP24.28■■□□□ 1.48
CLIP1-215ENST00000541108 KCNA6P17658 529 aa24.27■■□□□ 1.48
CLIP1-215ENST00000541108 ADGRB2O60241 1585 aa24.27■■□□□ 1.48
CLIP1-215ENST00000541108 HSPA2P54652 639 aa24.25■■□□□ 1.47
CLIP1-215ENST00000541108 TMC1Q8TDI8 760 aa24.25■■□□□ 1.47
CLIP1-215ENST00000541108 SLC12A5Q9H2X9 1139 aa24.25■■□□□ 1.47
CLIP1-215ENST00000541108 KNSTRNQ9Y448 316 aa24.25■■□□□ 1.47
CLIP1-215ENST00000541108 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.24■■□□□ 1.47
CLIP1-215ENST00000541108 RALBP1Q15311 655 aa24.23■■□□□ 1.47
CLIP1-215ENST00000541108 NPC1L1Q9UHC9 1359 aa24.22■■□□□ 1.47
CLIP1-215ENST00000541108 ANKRD36BQ8N2N9 1353 aa24.21■■□□□ 1.47
CLIP1-215ENST00000541108 NWD1Q149M9 1564 aa24.19■■□□□ 1.46
CLIP1-215ENST00000541108 AMER1Q5JTC6 1135 aaPredicted RBP24.18■■□□□ 1.46
CLIP1-215ENST00000541108 CARD14Q9BXL6 1004 aa24.18■■□□□ 1.46
CLIP1-215ENST00000541108 TERF2IPQ9NYB0 399 aa24.18■■□□□ 1.46
CLIP1-215ENST00000541108 CCDC61Q9Y6R9 512 aa24.17■■□□□ 1.46
CLIP1-215ENST00000541108 PARD3Q8TEW0 1356 aa24.17■■□□□ 1.46
CLIP1-215ENST00000541108 STRCQ7RTU9 1775 aa24.16■■□□□ 1.46
CLIP1-215ENST00000541108 NUDT16Q96DE0 195 aaKnown RBP24.15■■□□□ 1.46
CLIP1-215ENST00000541108 CABP1Q9NZU7 370 aa24.15■■□□□ 1.46
CLIP1-215ENST00000541108 NKTRP30414 1462 aaKnown RBP24.13■■□□□ 1.45
CLIP1-215ENST00000541108 ATP7BP35670 1465 aa24.13■■□□□ 1.45
CLIP1-215ENST00000541108 CC2D1BQ5T0F9 858 aaKnown RBP24.12■■□□□ 1.45
CLIP1-215ENST00000541108 A0A1W2PP64 1363 aa24.12■■□□□ 1.45
CLIP1-215ENST00000541108 CD163L1Q9NR16 1453 aa24.12■■□□□ 1.45
CLIP1-215ENST00000541108 HDGFL2Q7Z4V5 671 aaPredicted RBP24.11■■□□□ 1.45
CLIP1-215ENST00000541108 MYBBP1AQ9BQG0 1328 aaKnown RBP24.11■■□□□ 1.45
CLIP1-215ENST00000541108 USP32Q8NFA0 1604 aa24.11■■□□□ 1.45
CLIP1-215ENST00000541108 NSD3Q9BZ95 1437 aa24.11■■□□□ 1.45
CLIP1-215ENST00000541108 PPIP5K1Q6PFW1 1433 aa24.1■■□□□ 1.45
CLIP1-215ENST00000541108 CNGB1Q14028 1251 aaPredicted RBP24.09■■□□□ 1.45
CLIP1-215ENST00000541108 CGNL1Q0VF96 1302 aa24.09■■□□□ 1.45
CLIP1-215ENST00000541108 PRR36Q9H6K5 1346 aa24.09■■□□□ 1.45
CLIP1-215ENST00000541108 ADGRL3Q9HAR2 1447 aa24.08■■□□□ 1.44
CLIP1-215ENST00000541108 CPSF1Q10570 1443 aaKnown RBP24.07■■□□□ 1.44
CLIP1-215ENST00000541108 CDC42BPGQ6DT37 1551 aa24.07■■□□□ 1.44
CLIP1-215ENST00000541108 ANKARQ7Z5J8 1434 aa24.07■■□□□ 1.44
CLIP1-215ENST00000541108 NSD2O96028 1365 aa24.06■■□□□ 1.44
CLIP1-215ENST00000541108 PLEKHG3A1L390 1219 aa24.06■■□□□ 1.44
CLIP1-215ENST00000541108 PROSER2Q86WR7 435 aaPredicted RBP24.06■■□□□ 1.44
CLIP1-215ENST00000541108 ZNF692Q9BU19 519 aaPredicted RBP24.06■■□□□ 1.44
CLIP1-215ENST00000541108 NALCNQ8IZF0 1738 aa24.06■■□□□ 1.44
CLIP1-215ENST00000541108 NCOA3Q9Y6Q9 1424 aa24.06■■□□□ 1.44
CLIP1-215ENST00000541108 DMRT2Q9Y5R5 561 aa24.05■■□□□ 1.44
CLIP1-215ENST00000541108 TOPAZ1Q8N9V7 1692 aa24.05■■□□□ 1.44
CLIP1-215ENST00000541108 NLRP13Q86W25 1043 aa24.05■■□□□ 1.44
CLIP1-215ENST00000541108 MRS2Q9HD23 443 aa24.05■■□□□ 1.44
CLIP1-215ENST00000541108 BRD4O60885 1362 aaPredicted RBP24.04■■□□□ 1.44
CLIP1-215ENST00000541108 FMN2Q9NZ56 1722 aa24.04■■□□□ 1.44
CLIP1-215ENST00000541108 ITSN1Q15811 1721 aa24.02■■□□□ 1.44
CLIP1-215ENST00000541108 CCDC184Q52MB2 194 aa24.02■■□□□ 1.44
CLIP1-215ENST00000541108 STRCP1A6NGW2 1772 aa24.01■■□□□ 1.43
CLIP1-215ENST00000541108 NUTM2FA1L443 756 aa23.99■■□□□ 1.43
CLIP1-215ENST00000541108 C14orf37Q86TY3 774 aa23.99■■□□□ 1.43
CLIP1-215ENST00000541108 C19orf44Q9H6X5 657 aa23.99■■□□□ 1.43
CLIP1-215ENST00000541108 EDC4Q6P2E9 1401 aaKnown RBP23.99■■□□□ 1.43
CLIP1-215ENST00000541108 AKAP12Q02952 1782 aa23.99■■□□□ 1.43
CLIP1-215ENST00000541108 RBM33Q96EV2 1170 aaKnown RBP23.99■■□□□ 1.43
CLIP1-215ENST00000541108 PPP2R1AP30153 589 aa23.97■■□□□ 1.43
CLIP1-215ENST00000541108 MON2Q7Z3U7 1717 aa23.97■■□□□ 1.43
CLIP1-215ENST00000541108 ACEP12821 1306 aa23.97■■□□□ 1.43
CLIP1-215ENST00000541108 FYB1O15117 783 aa23.96■■□□□ 1.43
CLIP1-215ENST00000541108 MORC1Q86VD1 984 aa23.96■■□□□ 1.43
CLIP1-215ENST00000541108 RGPD8O14715 1765 aaPredicted RBP23.96■■□□□ 1.43
CLIP1-215ENST00000541108 POLR3AO14802 1390 aaPredicted RBP23.96■■□□□ 1.43
CLIP1-215ENST00000541108 TMEM94Q12767 1356 aa23.96■■□□□ 1.43
CLIP1-215ENST00000541108 DCCP43146 1447 aa23.93■■□□□ 1.42
CLIP1-215ENST00000541108 YTHDC1Q96MU7 727 aaKnown RBP23.93■■□□□ 1.42
CLIP1-215ENST00000541108 PNISRQ8TF01 805 aaKnown RBP23.92■■□□□ 1.42
CLIP1-215ENST00000541108 USP6P35125 1406 aa23.91■■□□□ 1.42
CLIP1-215ENST00000541108 ANKRD26Q9UPS8 1709 aa23.91■■□□□ 1.42
CLIP1-215ENST00000541108 NGDNQ8NEJ9 315 aaKnown RBP23.91■■□□□ 1.42
CLIP1-215ENST00000541108 KIF20BQ96Q89 1820 aa23.9■■□□□ 1.42
CLIP1-215ENST00000541108 PMFBP1Q8TBY8 1022 aa23.9■■□□□ 1.42
CLIP1-215ENST00000541108 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.89■■□□□ 1.42
CLIP1-215ENST00000541108 GGNBP2Q9H3C7 697 aa23.89■■□□□ 1.42
CLIP1-215ENST00000541108 ZNF335Q9H4Z2 1342 aaPredicted RBP23.89■■□□□ 1.41
CLIP1-215ENST00000541108 PHF8Q9UPP1 1060 aa23.88■■□□□ 1.41
CLIP1-215ENST00000541108 SSH2Q76I76 1423 aa23.88■■□□□ 1.41
CLIP1-215ENST00000541108 ATF3P18847 181 aa23.87■■□□□ 1.41
CLIP1-215ENST00000541108 FAM9BQ8IZU0 186 aa23.87■■□□□ 1.41
CLIP1-215ENST00000541108 NRKQ7Z2Y5 1582 aa23.87■■□□□ 1.41
CLIP1-215ENST00000541108 LRRC7Q96NW7 1537 aa23.87■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms