RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 THAP11Q96EK4 314 aa9.33□□□□□ -0.92
PRKDC-209ENST00000540819 SALL2Q9Y467 1007 aaPredicted RBP9.33□□□□□ -0.92
PRKDC-209ENST00000540819 ZBTB24O43167 697 aaPredicted RBP9.32□□□□□ -0.92
PRKDC-209ENST00000540819 FCF1Q9Y324 198 aaKnown RBP9.32□□□□□ -0.92
PRKDC-209ENST00000540819 BRICD5Q6PL45 260 aa9.31□□□□□ -0.92
PRKDC-209ENST00000540819 Q3C1V9 767 aa9.3□□□□□ -0.92
PRKDC-209ENST00000540819 FAM160A2Q8N612 972 aaPredicted RBP9.3□□□□□ -0.92
PRKDC-209ENST00000540819 HRCP23327 699 aa9.29□□□□□ -0.92
PRKDC-209ENST00000540819 MAP2K5Q13163 448 aa9.29□□□□□ -0.92
PRKDC-209ENST00000540819 NEUROD2Q15784 382 aa9.28□□□□□ -0.92
PRKDC-209ENST00000540819 IRF6O14896 467 aa9.27□□□□□ -0.93
PRKDC-209ENST00000540819 CYP4X1Q8N118 509 aa9.27□□□□□ -0.93
PRKDC-209ENST00000540819 PKD2L1Q9P0L9 805 aa9.27□□□□□ -0.93
PRKDC-209ENST00000540819 MINK1Q8N4C8 1332 aaPredicted RBP9.27□□□□□ -0.93
PRKDC-209ENST00000540819 KDM4AO75164 1064 aa9.26□□□□□ -0.93
PRKDC-209ENST00000540819 CD46P15529 392 aa9.26□□□□□ -0.93
PRKDC-209ENST00000540819 MSS51Q4VC12 460 aa9.26□□□□□ -0.93
PRKDC-209ENST00000540819 ZNF775Q96BV0 537 aaPredicted RBP9.26□□□□□ -0.93
PRKDC-209ENST00000540819 RNF19BQ6ZMZ0 732 aa9.25□□□□□ -0.93
PRKDC-209ENST00000540819 MDM2Q00987 491 aaPredicted RBP9.24□□□□□ -0.93
PRKDC-209ENST00000540819 KRI1Q8N9T8 703 aaKnown RBP9.24□□□□□ -0.93
PRKDC-209ENST00000540819 PRDM9Q9NQV7 894 aa9.24□□□□□ -0.93
PRKDC-209ENST00000540819 USP46P62068 366 aa9.23□□□□□ -0.93
PRKDC-209ENST00000540819 ZMYND15Q9H091 742 aa9.23□□□□□ -0.93
PRKDC-209ENST00000540819 RSPH6AQ9H0K4 717 aa9.23□□□□□ -0.93
PRKDC-209ENST00000540819 TTC24A2A3L6 582 aaPredicted RBP9.22□□□□□ -0.93
PRKDC-209ENST00000540819 USB1Q9BQ65 265 aaKnown RBP9.22□□□□□ -0.93
PRKDC-209ENST00000540819 AAASQ9NRG9 546 aa9.22□□□□□ -0.93
PRKDC-209ENST00000540819 ST8SIA5O15466 376 aa9.21□□□□□ -0.94
PRKDC-209ENST00000540819 POTECB2RU33 542 aa9.2□□□□□ -0.94
PRKDC-209ENST00000540819 TOR4AQ9NXH8 423 aa9.2□□□□□ -0.94
PRKDC-209ENST00000540819 AXIN1O15169 862 aa9.19□□□□□ -0.94
PRKDC-209ENST00000540819 CLCN1P35523 988 aa9.19□□□□□ -0.94
PRKDC-209ENST00000540819 MMP16P51512 607 aa9.19□□□□□ -0.94
PRKDC-209ENST00000540819 CCDC24Q8N4L8 307 aa9.19□□□□□ -0.94
PRKDC-209ENST00000540819 NUTM1Q86Y26 1132 aa9.18□□□□□ -0.94
PRKDC-209ENST00000540819 CCDC102AQ96A19 550 aa9.18□□□□□ -0.94
PRKDC-209ENST00000540819 GPCPD1Q9NPB8 672 aa9.18□□□□□ -0.94
PRKDC-209ENST00000540819 TRIM32Q13049 653 aa9.17□□□□□ -0.94
PRKDC-209ENST00000540819 CTC1Q2NKJ3 1217 aa9.17□□□□□ -0.94
PRKDC-209ENST00000540819 ZC3H15Q8WU90 426 aaKnown RBP9.17□□□□□ -0.94
PRKDC-209ENST00000540819 WNT7AO00755 349 aa9.16□□□□□ -0.94
PRKDC-209ENST00000540819 AVPP01185 164 aa9.16□□□□□ -0.94
PRKDC-209ENST00000540819 CRIPAKQ8N1N5 446 aa9.16□□□□□ -0.94
PRKDC-209ENST00000540819 HOXA2O43364 376 aa9.15□□□□□ -0.94
PRKDC-209ENST00000540819 DXOO77932 396 aaKnown RBP9.15□□□□□ -0.94
PRKDC-209ENST00000540819 SNIP1Q8TAD8 396 aaKnown RBP9.15□□□□□ -0.94
PRKDC-209ENST00000540819 HLA-CQ95604 372 aa9.14□□□□□ -0.95
PRKDC-209ENST00000540819 SLC24A3Q9HC58 644 aa9.14□□□□□ -0.95
PRKDC-209ENST00000540819 CCDC9Q9Y3X0 531 aaKnown RBP9.14□□□□□ -0.95
PRKDC-209ENST00000540819 REPIN1Q9BWE0 567 aaKnown RBP9.13□□□□□ -0.95
PRKDC-209ENST00000540819 FAM217BQ9NTX9 383 aaPredicted RBP9.13□□□□□ -0.95
PRKDC-209ENST00000540819 C11orf95C9JLR9 678 aaPredicted RBP9.11□□□□□ -0.95
PRKDC-209ENST00000540819 SMCPP49901 116 aaPredicted RBP9.11□□□□□ -0.95
PRKDC-209ENST00000540819 MRGPRX2Q96LB1 330 aa9.11□□□□□ -0.95
PRKDC-209ENST00000540819 DACH1Q9UI36 760 aa9.11□□□□□ -0.95
PRKDC-209ENST00000540819 ZBTB7CA1YPR0 619 aa9.1□□□□□ -0.95
PRKDC-209ENST00000540819 JUNDP17535 347 aa9.1□□□□□ -0.95
PRKDC-209ENST00000540819 GUCA2AQ02747 115 aa9.1□□□□□ -0.95
PRKDC-209ENST00000540819 SYMPKQ92797 1274 aaKnown RBP9.1□□□□□ -0.95
PRKDC-209ENST00000540819 GMPR2Q9P2T1 348 aaKnown RBP9.1□□□□□ -0.95
PRKDC-209ENST00000540819 SMPD1P17405 629 aa9.09□□□□□ -0.95
PRKDC-209ENST00000540819 RC3H1Q5TC82 1133 aaKnown RBP9.09□□□□□ -0.95
PRKDC-209ENST00000540819 C6orf229H3BNL8 230 aa9.08□□□□□ -0.96
PRKDC-209ENST00000540819 FDX1P10109 184 aa9.08□□□□□ -0.96
PRKDC-209ENST00000540819 SSTR3P32745 418 aaPredicted RBP9.08□□□□□ -0.96
PRKDC-209ENST00000540819 WNT7BP56706 349 aa9.08□□□□□ -0.96
PRKDC-209ENST00000540819 RETREG3Q86VR2 466 aa9.08□□□□□ -0.96
PRKDC-209ENST00000540819 J3QL48 77 aa9.07□□□□□ -0.96
PRKDC-209ENST00000540819 TREML4Q6UXN2 200 aa9.07□□□□□ -0.96
PRKDC-209ENST00000540819 ARID3AQ99856 593 aa9.07□□□□□ -0.96
PRKDC-209ENST00000540819 NUDT12Q9BQG2 462 aa9.06□□□□□ -0.96
PRKDC-209ENST00000540819 TTLL12Q14166 644 aaPredicted RBP9.05□□□□□ -0.96
PRKDC-209ENST00000540819 PDIA4P13667 645 aaKnown RBP9.04□□□□□ -0.96
PRKDC-209ENST00000540819 SKOR1P84550 965 aa9.04□□□□□ -0.96
PRKDC-209ENST00000540819 BARGINQ6ZT62 677 aa9.03□□□□□ -0.96
PRKDC-209ENST00000540819 SPIRE2Q8WWL2 714 aa9.03□□□□□ -0.96
PRKDC-209ENST00000540819 SENP2Q9HC62 589 aa9.03□□□□□ -0.96
PRKDC-209ENST00000540819 ATP13A2Q9NQ11 1180 aa9.03□□□□□ -0.96
PRKDC-209ENST00000540819 ZMYND10O75800 440 aa9.02□□□□□ -0.97
PRKDC-209ENST00000540819 ALDH1A1P00352 501 aa9.02□□□□□ -0.97
PRKDC-209ENST00000540819 MS4A1P11836 297 aa9.02□□□□□ -0.97
PRKDC-209ENST00000540819 EHBP1Q8NDI1 1231 aa9.02□□□□□ -0.97
PRKDC-209ENST00000540819 HPS1Q92902 700 aa9.02□□□□□ -0.97
PRKDC-209ENST00000540819 WFS1O76024 890 aa9.01□□□□□ -0.97
PRKDC-209ENST00000540819 PTCRAQ6ISU1 281 aaPredicted RBP9.01□□□□□ -0.97
PRKDC-209ENST00000540819 C1orf115Q9H7X2 142 aa9.01□□□□□ -0.97
PRKDC-209ENST00000540819 PCDHGC3Q9UN70 934 aa9.01□□□□□ -0.97
PRKDC-209ENST00000540819 CCNYL3P0C7X3 344 aa9□□□□□ -0.97
PRKDC-209ENST00000540819 NDUFV2P19404 249 aa9□□□□□ -0.97
PRKDC-209ENST00000540819 WASF2Q9Y6W5 498 aa9□□□□□ -0.97
PRKDC-209ENST00000540819 SPDYE5A6NIY4 337 aa8.99□□□□□ -0.97
PRKDC-209ENST00000540819 KIFC2Q96AC6 838 aa8.99□□□□□ -0.97
PRKDC-209ENST00000540819 MOXD2PA6NHM9 499 aa8.98□□□□□ -0.97
PRKDC-209ENST00000540819 DIXDC1Q155Q3 683 aa8.98□□□□□ -0.97
PRKDC-209ENST00000540819 EVA1BQ9NVM1 165 aa8.98□□□□□ -0.97
PRKDC-209ENST00000540819 MTMR2Q13614 643 aa8.97□□□□□ -0.97
PRKDC-209ENST00000540819 AMHR2Q16671 573 aa8.97□□□□□ -0.97
PRKDC-209ENST00000540819 PTPRNQ16849 979 aa8.97□□□□□ -0.97
PRKDC-209ENST00000540819 GIGYF2Q6Y7W6 1299 aaKnown RBP8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms