RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 SLC12A5Q9H2X9 1139 aa18.34■□□□□ 0.53
RTN3-210ENST00000540798 ZNF521Q96K83 1311 aa18.34■□□□□ 0.53
RTN3-210ENST00000540798 NINLQ9Y2I6 1382 aa18.34■□□□□ 0.53
RTN3-210ENST00000540798 WDR43Q15061 677 aaKnown RBP eCLIP18.34■□□□□ 0.53
RTN3-210ENST00000540798 NRXN3Q9Y4C0 1643 aa18.33■□□□□ 0.52
RTN3-210ENST00000540798 PLEKHH1Q9ULM0 1364 aa18.32■□□□□ 0.52
RTN3-210ENST00000540798 CDCA7LQ96GN5 454 aa18.32■□□□□ 0.52
RTN3-210ENST00000540798 RCAN3Q9UKA8 241 aa18.32■□□□□ 0.52
RTN3-210ENST00000540798 NSD2O96028 1365 aa18.31■□□□□ 0.52
RTN3-210ENST00000540798 RRP1P56182 461 aaKnown RBP18.31■□□□□ 0.52
RTN3-210ENST00000540798 ANKRD26Q9UPS8 1709 aa18.31■□□□□ 0.52
RTN3-210ENST00000540798 RIMS2Q9UQ26 1411 aa18.3■□□□□ 0.52
RTN3-210ENST00000540798 SALL2Q9Y467 1007 aaPredicted RBP18.3■□□□□ 0.52
RTN3-210ENST00000540798 B4GALNT3Q6L9W6 998 aa18.28■□□□□ 0.52
RTN3-210ENST00000540798 ZMYM3Q14202 1370 aa18.28■□□□□ 0.52
RTN3-210ENST00000540798 CD163L1Q9NR16 1453 aa18.27■□□□□ 0.52
RTN3-210ENST00000540798 CGNL1Q0VF96 1302 aa18.27■□□□□ 0.52
RTN3-210ENST00000540798 KNDC1Q76NI1 1749 aa18.27■□□□□ 0.52
RTN3-210ENST00000540798 ATAD2Q6PL18 1390 aa18.26■□□□□ 0.51
RTN3-210ENST00000540798 ABCC11Q96J66 1382 aa18.26■□□□□ 0.51
RTN3-210ENST00000540798 CABP2Q9NPB3 220 aa18.25■□□□□ 0.51
RTN3-210ENST00000540798 UBR1Q8IWV7 1749 aa18.25■□□□□ 0.51
RTN3-210ENST00000540798 MORC1Q86VD1 984 aa18.25■□□□□ 0.51
RTN3-210ENST00000540798 MED14O60244 1454 aa18.25■□□□□ 0.51
RTN3-210ENST00000540798 STK26Q9P289 416 aa18.25■□□□□ 0.51
RTN3-210ENST00000540798 A0A1W2PP64 1363 aa18.24■□□□□ 0.51
RTN3-210ENST00000540798 PRAM1Q96QH2 718 aa18.24■□□□□ 0.51
RTN3-210ENST00000540798 STAG3Q9UJ98 1225 aa18.24■□□□□ 0.51
RTN3-210ENST00000540798 NGEFQ8N5V2 710 aa18.23■□□□□ 0.51
RTN3-210ENST00000540798 MLECQ14165 292 aa18.23■□□□□ 0.51
RTN3-210ENST00000540798 DUSP27Q5VZP5 1158 aa18.23■□□□□ 0.51
RTN3-210ENST00000540798 TRMT2AQ8IZ69 625 aaKnown RBP18.23■□□□□ 0.51
RTN3-210ENST00000540798 NLRP1Q9C000 1473 aa18.23■□□□□ 0.51
RTN3-210ENST00000540798 RBM19Q9Y4C8 960 aaKnown RBP18.22■□□□□ 0.51
RTN3-210ENST00000540798 ERICH6Q7L0X2 663 aa18.22■□□□□ 0.51
RTN3-210ENST00000540798 IQSEC2Q5JU85 1478 aa18.22■□□□□ 0.51
RTN3-210ENST00000540798 KIF20BQ96Q89 1820 aa18.21■□□□□ 0.51
RTN3-210ENST00000540798 GOLGA2Q08379 1002 aa18.2■□□□□ 0.5
RTN3-210ENST00000540798 SAFB2Q14151 953 aaKnown RBP eCLIP18.2■□□□□ 0.51e-7■■■■□ 23.5
RTN3-210ENST00000540798 SLFN5Q08AF3 891 aa18.2■□□□□ 0.5
RTN3-210ENST00000540798 TNRQ92752 1358 aa18.19■□□□□ 0.5
RTN3-210ENST00000540798 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.19■□□□□ 0.5
RTN3-210ENST00000540798 MINK1Q8N4C8 1332 aaPredicted RBP18.19■□□□□ 0.5
RTN3-210ENST00000540798 CCDC146Q8IYE0 955 aa18.18■□□□□ 0.5
RTN3-210ENST00000540798 POGKQ9P215 609 aa18.18■□□□□ 0.5
RTN3-210ENST00000540798 TECPR2O15040 1411 aa18.18■□□□□ 0.5
RTN3-210ENST00000540798 CPS1P31327 1500 aa18.18■□□□□ 0.5
RTN3-210ENST00000540798 SRPK2P78362 688 aaKnown RBP18.18■□□□□ 0.5
RTN3-210ENST00000540798 APAF1O14727 1248 aa18.17■□□□□ 0.5
RTN3-210ENST00000540798 CCDC136Q96JN2 1154 aa18.17■□□□□ 0.5
RTN3-210ENST00000540798 COL3A1P02461 1466 aaPredicted RBP18.16■□□□□ 0.5
RTN3-210ENST00000540798 ATP7BP35670 1465 aa18.16■□□□□ 0.5
RTN3-210ENST00000540798 ADGRB2O60241 1585 aa18.16■□□□□ 0.5
RTN3-210ENST00000540798 EXOC6Q8TAG9 804 aa18.16■□□□□ 0.5
RTN3-210ENST00000540798 CDK19Q9BWU1 502 aa18.15■□□□□ 0.5
RTN3-210ENST00000540798 ESF1Q9H501 851 aaKnown RBP18.15■□□□□ 0.5
RTN3-210ENST00000540798 MTHFSP49914 203 aa18.15■□□□□ 0.5
RTN3-210ENST00000540798 TERF2IPQ9NYB0 399 aa18.15■□□□□ 0.5
RTN3-210ENST00000540798 FAM135BQ49AJ0 1406 aa18.15■□□□□ 0.5
RTN3-210ENST00000540798 METP08581 1390 aa18.14■□□□□ 0.5
RTN3-210ENST00000540798 SENP3Q9H4L4 574 aaPredicted RBP18.14■□□□□ 0.5
RTN3-210ENST00000540798 SIRT1Q96EB6 747 aa18.14■□□□□ 0.49
RTN3-210ENST00000540798 NKTRP30414 1462 aaKnown RBP18.14■□□□□ 0.49
RTN3-210ENST00000540798 TMEM2Q9UHN6 1383 aa18.14■□□□□ 0.49
RTN3-210ENST00000540798 NCBP3Q53F19 620 aaKnown RBP18.14■□□□□ 0.49
RTN3-210ENST00000540798 PHF23Q9BUL5 403 aaPredicted RBP18.13■□□□□ 0.49
RTN3-210ENST00000540798 C3P01024 1663 aa18.13■□□□□ 0.49
RTN3-210ENST00000540798 TNNT2P45379 298 aaPredicted RBP18.12■□□□□ 0.49
RTN3-210ENST00000540798 RUNDC1Q96C34 613 aa18.12■□□□□ 0.49
RTN3-210ENST00000540798 CFAP53Q96M91 514 aa18.12■□□□□ 0.49
RTN3-210ENST00000540798 SPINK5Q9NQ38 1064 aaPredicted RBP18.12■□□□□ 0.49
RTN3-210ENST00000540798 E9PSI1 815 aa18.11■□□□□ 0.49
RTN3-210ENST00000540798 FYB1O15117 783 aa18.11■□□□□ 0.49
RTN3-210ENST00000540798 HDGFP51858 240 aaKnown RBP18.1■□□□□ 0.49
RTN3-210ENST00000540798 WAPLQ7Z5K2 1190 aa18.1■□□□□ 0.49
RTN3-210ENST00000540798 MON2Q7Z3U7 1717 aa18.1■□□□□ 0.49
RTN3-210ENST00000540798 ADAMTS13Q76LX8 1427 aa18.09■□□□□ 0.49
RTN3-210ENST00000540798 CPSF1Q10570 1443 aaKnown RBP18.09■□□□□ 0.49
RTN3-210ENST00000540798 AKAP12Q02952 1782 aa18.09■□□□□ 0.49
RTN3-210ENST00000540798 PLIN1O60240 522 aa18.09■□□□□ 0.49
RTN3-210ENST00000540798 HDGFL2Q7Z4V5 671 aaPredicted RBP18.09■□□□□ 0.49
RTN3-210ENST00000540798 WWC1Q8IX03 1113 aa18.09■□□□□ 0.49
RTN3-210ENST00000540798 FER1L4A9Z1Z3 1794 aa18.09■□□□□ 0.49
RTN3-210ENST00000540798 CDC42BPGQ6DT37 1551 aa18.08■□□□□ 0.49
RTN3-210ENST00000540798 DMRT2Q9Y5R5 561 aa18.08■□□□□ 0.49
RTN3-210ENST00000540798 CCDC27Q2M243 656 aa18.07■□□□□ 0.48
RTN3-210ENST00000540798 CABP1Q9NZU7 370 aa18.07■□□□□ 0.48
RTN3-210ENST00000540798 PNPLA6Q8IY17 1366 aa18.07■□□□□ 0.48
RTN3-210ENST00000540798 SLIT1O75093 1534 aa18.07■□□□□ 0.48
RTN3-210ENST00000540798 PLEKHG1Q9ULL1 1385 aa18.07■□□□□ 0.48
RTN3-210ENST00000540798 GGNBP2Q9H3C7 697 aa18.06■□□□□ 0.48
RTN3-210ENST00000540798 ANO8Q9HCE9 1232 aaPredicted RBP18.06■□□□□ 0.48
RTN3-210ENST00000540798 CRBNQ96SW2 442 aa18.05■□□□□ 0.48
RTN3-210ENST00000540798 ARHGAP23Q9P227 1491 aa18.05■□□□□ 0.48
RTN3-210ENST00000540798 WASLO00401 505 aaPredicted RBP18.05■□□□□ 0.48
RTN3-210ENST00000540798 FANCIQ9NVI1 1328 aa18.05■□□□□ 0.48
RTN3-210ENST00000540798 TOPAZ1Q8N9V7 1692 aa18.05■□□□□ 0.48
RTN3-210ENST00000540798 TCP11L2Q8N4U5 519 aa18.05■□□□□ 0.48
RTN3-210ENST00000540798 ITSN1Q15811 1721 aa18.04■□□□□ 0.48
RTN3-210ENST00000540798 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms