RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 TECPR2O15040 1411 aa11.15□□□□□ -0.62
YBX3-209ENST00000540747 PPLO60437 1756 aa11.15□□□□□ -0.62
YBX3-209ENST00000540747 BCL9LQ86UU0 1499 aa11.13□□□□□ -0.63
YBX3-209ENST00000540747 ADAMTS2O95450 1211 aa11.13□□□□□ -0.63
YBX3-209ENST00000540747 NGLY1Q96IV0 654 aa11.13□□□□□ -0.63
YBX3-209ENST00000540747 ATAD2Q6PL18 1390 aa11.13□□□□□ -0.63
YBX3-209ENST00000540747 PPARGC1BQ86YN6 1023 aaKnown RBP11.12□□□□□ -0.63
YBX3-209ENST00000540747 TRPC5Q9UL62 973 aaPredicted RBP11.12□□□□□ -0.63
YBX3-209ENST00000540747 SPATA31E1Q6ZUB1 1445 aa11.11□□□□□ -0.63
YBX3-209ENST00000540747 USP21Q9UK80 565 aa11.11□□□□□ -0.63
YBX3-209ENST00000540747 NPHP3Q7Z494 1330 aa11.09□□□□□ -0.63
YBX3-209ENST00000540747 LRPPRCP42704 1394 aaKnown RBP11.09□□□□□ -0.63
YBX3-209ENST00000540747 MARF1Q9Y4F3 1742 aaKnown RBP11.09□□□□□ -0.63
YBX3-209ENST00000540747 ADGRF5Q8IZF2 1346 aa11.09□□□□□ -0.63
YBX3-209ENST00000540747 ABCC11Q96J66 1382 aa11.08□□□□□ -0.64
YBX3-209ENST00000540747 KNDC1Q76NI1 1749 aa11.08□□□□□ -0.64
YBX3-209ENST00000540747 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.08□□□□□ -0.64
YBX3-209ENST00000540747 IFT172Q9UG01 1749 aa11.08□□□□□ -0.64
YBX3-209ENST00000540747 SLIT2O94813 1529 aa11.08□□□□□ -0.64
YBX3-209ENST00000540747 PLEKHH1Q9ULM0 1364 aa11.07□□□□□ -0.64
YBX3-209ENST00000540747 SLC4A1APQ9BWU0 796 aaKnown RBP11.07□□□□□ -0.64
YBX3-209ENST00000540747 PIK3C2GO75747 1445 aa11.07□□□□□ -0.64
YBX3-209ENST00000540747 GLI3P10071 1580 aa11.07□□□□□ -0.64
YBX3-209ENST00000540747 ESCO1Q5FWF5 840 aa11.06□□□□□ -0.64
YBX3-209ENST00000540747 FMN2Q9NZ56 1722 aa11.06□□□□□ -0.64
YBX3-209ENST00000540747 ANKRD30BQ9BXX2 1392 aa11.05□□□□□ -0.64
YBX3-209ENST00000540747 FOXO3O43524 673 aa11.05□□□□□ -0.64
YBX3-209ENST00000540747 GJD4Q96KN9 370 aaPredicted RBP11.05□□□□□ -0.64
YBX3-209ENST00000540747 RALGAPBQ86X10 1494 aa11.05□□□□□ -0.64
YBX3-209ENST00000540747 SPATA31A3Q5VYP0 1347 aa11.05□□□□□ -0.64
YBX3-209ENST00000540747 CCDC144AA2RUR9 1427 aa11.04□□□□□ -0.64
YBX3-209ENST00000540747 XPCQ01831 940 aaPredicted RBP11.04□□□□□ -0.64
YBX3-209ENST00000540747 WAPLQ7Z5K2 1190 aa11.04□□□□□ -0.64
YBX3-209ENST00000540747 CCDC125Q86Z20 511 aa11.04□□□□□ -0.64
YBX3-209ENST00000540747 USP32Q8NFA0 1604 aa11.04□□□□□ -0.64
YBX3-209ENST00000540747 NRXN1Q9ULB1 1477 aa11.04□□□□□ -0.64
YBX3-209ENST00000540747 KIF1AQ12756 1690 aa11.04□□□□□ -0.64
YBX3-209ENST00000540747 YTHDC2Q9H6S0 1430 aaKnown RBP11.03□□□□□ -0.64
YBX3-209ENST00000540747 FOXD1Q16676 465 aa11.03□□□□□ -0.64
YBX3-209ENST00000540747 SIRT1Q96EB6 747 aa11.03□□□□□ -0.64
YBX3-209ENST00000540747 UNC5CLQ8IV45 518 aa11.02□□□□□ -0.65
YBX3-209ENST00000540747 BLMP54132 1417 aaPredicted RBP11.01□□□□□ -0.65
YBX3-209ENST00000540747 TMEM132EQ6IEE7 984 aa11.01□□□□□ -0.65
YBX3-209ENST00000540747 STK26Q9P289 416 aa11.01□□□□□ -0.65
YBX3-209ENST00000540747 ZRANB1Q9UGI0 708 aa11.01□□□□□ -0.65
YBX3-209ENST00000540747 TNS3Q68CZ2 1445 aa11.01□□□□□ -0.65
YBX3-209ENST00000540747 ABCA3Q99758 1704 aa10.99□□□□□ -0.65
YBX3-209ENST00000540747 NUTM2FA1L443 756 aa10.99□□□□□ -0.65
YBX3-209ENST00000540747 ONECUT3O60422 494 aaPredicted RBP10.99□□□□□ -0.65
YBX3-209ENST00000540747 MPHOSPH9Q99550 1183 aa10.99□□□□□ -0.65
YBX3-209ENST00000540747 C14orf93Q9H972 538 aaKnown RBP10.99□□□□□ -0.65
YBX3-209ENST00000540747 SBNO1A3KN83 1393 aa10.99□□□□□ -0.65
YBX3-209ENST00000540747 BRWD3Q6RI45 1802 aa10.98□□□□□ -0.65
YBX3-209ENST00000540747 VPS72Q15906 364 aa10.98□□□□□ -0.65
YBX3-209ENST00000540747 RGL3Q3MIN7 710 aa10.98□□□□□ -0.65
YBX3-209ENST00000540747 KRT28Q7Z3Y7 464 aa10.98□□□□□ -0.65
YBX3-209ENST00000540747 DLC1Q96QB1 1528 aa10.98□□□□□ -0.65
YBX3-209ENST00000540747 ADGRB2O60241 1585 aa10.98□□□□□ -0.65
YBX3-209ENST00000540747 NWD2Q9ULI1 1742 aa10.98□□□□□ -0.65
YBX3-209ENST00000540747 PHF8Q9UPP1 1060 aa10.97□□□□□ -0.65
YBX3-209ENST00000540747 PLCH1Q4KWH8 1693 aa10.97□□□□□ -0.65
YBX3-209ENST00000540747 ADGRB1O14514 1584 aa10.96□□□□□ -0.65
YBX3-209ENST00000540747 ANKARQ7Z5J8 1434 aa10.96□□□□□ -0.65
YBX3-209ENST00000540747 RGPD8O14715 1765 aaPredicted RBP10.95□□□□□ -0.66
YBX3-209ENST00000540747 ARHGEF10O15013 1369 aa10.95□□□□□ -0.66
YBX3-209ENST00000540747 SEPT12Q8IYM1 358 aa10.95□□□□□ -0.66
YBX3-209ENST00000540747 NRAPQ86VF7 1730 aa10.95□□□□□ -0.66
YBX3-209ENST00000540747 TRPM3Q9HCF6 1732 aaPredicted RBP10.95□□□□□ -0.66
YBX3-209ENST00000540747 LRP5O75197 1615 aa10.95□□□□□ -0.66
YBX3-209ENST00000540747 CFAP70Q5T0N1 1121 aa10.94□□□□□ -0.66
YBX3-209ENST00000540747 DEFB132Q7Z7B7 95 aa10.94□□□□□ -0.66
YBX3-209ENST00000540747 CABLES1Q8TDN4 633 aa10.94□□□□□ -0.66
YBX3-209ENST00000540747 DHX57Q6P158 1386 aaKnown RBP10.93□□□□□ -0.66
YBX3-209ENST00000540747 ALS2Q96Q42 1657 aa10.93□□□□□ -0.66
YBX3-209ENST00000540747 FAM83GA6ND36 823 aa10.93□□□□□ -0.66
YBX3-209ENST00000540747 PSME1Q06323 249 aa10.93□□□□□ -0.66
YBX3-209ENST00000540747 PRAM1Q96QH2 718 aa10.92□□□□□ -0.66
YBX3-209ENST00000540747 PRR36Q9H6K5 1346 aa10.91□□□□□ -0.66
YBX3-209ENST00000540747 KRT27Q7Z3Y8 459 aa10.91□□□□□ -0.66
YBX3-209ENST00000540747 CRYBG1Q9Y4K1 1723 aa10.91□□□□□ -0.66
YBX3-209ENST00000540747 THSD7AQ9UPZ6 1657 aa10.9□□□□□ -0.66
YBX3-209ENST00000540747 DISP2A7MBM2 1401 aa10.9□□□□□ -0.66
YBX3-209ENST00000540747 TULP4Q9NRJ4 1543 aa10.89□□□□□ -0.67
YBX3-209ENST00000540747 ACIN1Q9UKV3 1341 aaKnown RBP10.89□□□□□ -0.67
YBX3-209ENST00000540747 COL14A1Q05707 1796 aaKnown RBP10.89□□□□□ -0.67
YBX3-209ENST00000540747 SAFB2Q14151 953 aaKnown RBP eCLIP10.88□□□□□ -0.67
YBX3-209ENST00000540747 PMFBP1Q8TBY8 1022 aa10.88□□□□□ -0.67
YBX3-209ENST00000540747 SPATA31A5Q5VU36 1347 aa10.87□□□□□ -0.67
YBX3-209ENST00000540747 SPATA31A7Q8IWB4 1347 aa10.87□□□□□ -0.67
YBX3-209ENST00000540747 HAP1P54257 671 aaPredicted RBP10.87□□□□□ -0.67
YBX3-209ENST00000540747 EIF3AQ14152 1382 aaKnown RBP10.87□□□□□ -0.67
YBX3-209ENST00000540747 HRCP23327 699 aa10.86□□□□□ -0.67
YBX3-209ENST00000540747 SF3B2Q13435 895 aaKnown RBP10.86□□□□□ -0.67
YBX3-209ENST00000540747 FAM98CQ17RN3 349 aaKnown RBP10.86□□□□□ -0.67
YBX3-209ENST00000540747 BTG4Q9NY30 223 aa10.86□□□□□ -0.67
YBX3-209ENST00000540747 TNS1Q9HBL0 1735 aaKnown RBP10.86□□□□□ -0.67
YBX3-209ENST00000540747 ATP7BP35670 1465 aa10.86□□□□□ -0.67
YBX3-209ENST00000540747 RGPD1P0DJD0 1748 aa10.85□□□□□ -0.67
YBX3-209ENST00000540747 WASLO00401 505 aaPredicted RBP10.85□□□□□ -0.67
YBX3-209ENST00000540747 BAG6P46379 1132 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms