RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 CABP4P57796 275 aa17.62■□□□□ 0.41
COLCA1-204ENST00000540738 G3BP1Q13283 466 aaKnown RBP eCLIP17.62■□□□□ 0.41
COLCA1-204ENST00000540738 PTMAP06454 111 aaKnown RBP17.62■□□□□ 0.41
COLCA1-204ENST00000540738 CADPS2Q86UW7 1296 aa17.62■□□□□ 0.41
COLCA1-204ENST00000540738 KIF16BQ96L93 1317 aa17.62■□□□□ 0.41
COLCA1-204ENST00000540738 TOM1O60784 492 aa17.62■□□□□ 0.41
COLCA1-204ENST00000540738 FBXO31Q5XUX0 539 aaPredicted RBP17.62■□□□□ 0.41
COLCA1-204ENST00000540738 DDX54Q8TDD1 881 aaKnown RBP17.61■□□□□ 0.41
COLCA1-204ENST00000540738 KIF3AQ9Y496 699 aa17.61■□□□□ 0.41
COLCA1-204ENST00000540738 FBXW7Q969H0 707 aa17.61■□□□□ 0.41
COLCA1-204ENST00000540738 SLC12A5Q9H2X9 1139 aa17.61■□□□□ 0.41
COLCA1-204ENST00000540738 PLCH2O75038 1416 aa17.61■□□□□ 0.41
COLCA1-204ENST00000540738 WWC1Q8IX03 1113 aa17.61■□□□□ 0.41
COLCA1-204ENST00000540738 TRIM44Q96DX7 344 aaPredicted RBP17.61■□□□□ 0.41
COLCA1-204ENST00000540738 DDX19BQ9UMR2 479 aa17.61■□□□□ 0.41
COLCA1-204ENST00000540738 MAP3K1Q13233 1512 aa17.6■□□□□ 0.41
COLCA1-204ENST00000540738 BCL2L13Q9BXK5 485 aa17.6■□□□□ 0.41
COLCA1-204ENST00000540738 CTDP1Q9Y5B0 961 aaPredicted RBP17.6■□□□□ 0.41
COLCA1-204ENST00000540738 IDI1Q13907 227 aa17.6■□□□□ 0.41
COLCA1-204ENST00000540738 ZNF530Q6P9A1 599 aaPredicted RBP17.6■□□□□ 0.41
COLCA1-204ENST00000540738 CNTLNQ9NXG0 1405 aa17.6■□□□□ 0.41
COLCA1-204ENST00000540738 ABCC5O15440 1437 aa17.59■□□□□ 0.41
COLCA1-204ENST00000540738 PHF8Q9UPP1 1060 aa17.59■□□□□ 0.41
COLCA1-204ENST00000540738 IFIT2P09913 472 aaKnown RBP17.59■□□□□ 0.41
COLCA1-204ENST00000540738 CCDC30Q5VVM6 783 aa17.59■□□□□ 0.41
COLCA1-204ENST00000540738 AIMP1Q12904 312 aaKnown RBP17.58■□□□□ 0.41
COLCA1-204ENST00000540738 FAM135AQ9P2D6 1515 aa17.58■□□□□ 0.41
COLCA1-204ENST00000540738 XPCQ01831 940 aaPredicted RBP17.58■□□□□ 0.4
COLCA1-204ENST00000540738 ZNF518AQ6AHZ1 1483 aa17.57■□□□□ 0.4
COLCA1-204ENST00000540738 PRKAR2BP31323 418 aa17.57■□□□□ 0.4
COLCA1-204ENST00000540738 ZC3H6P61129 1189 aaKnown RBP17.56■□□□□ 0.4
COLCA1-204ENST00000540738 RUFY2Q8WXA3 655 aa17.56■□□□□ 0.4
COLCA1-204ENST00000540738 NGLY1Q96IV0 654 aa17.56■□□□□ 0.4
COLCA1-204ENST00000540738 WDR62O43379 1518 aa17.56■□□□□ 0.4
COLCA1-204ENST00000540738 TCERG1O14776 1098 aaKnown RBP17.56■□□□□ 0.4
COLCA1-204ENST00000540738 PTPN23Q9H3S7 1636 aa17.56■□□□□ 0.4
COLCA1-204ENST00000540738 RAPGEF6Q8TEU7 1601 aa17.56■□□□□ 0.4
COLCA1-204ENST00000540738 MSH6P52701 1360 aa17.56■□□□□ 0.4
COLCA1-204ENST00000540738 ATP10BO94823 1461 aa17.55■□□□□ 0.4
COLCA1-204ENST00000540738 SULT6B1Q6IMI4 303 aa17.55■□□□□ 0.4
COLCA1-204ENST00000540738 DZIP1LQ8IYY4 767 aaKnown RBP17.55■□□□□ 0.4
COLCA1-204ENST00000540738 DIAPH3Q9NSV4 1193 aa17.55■□□□□ 0.4
COLCA1-204ENST00000540738 SYNE3Q6ZMZ3 975 aa17.54■□□□□ 0.4
COLCA1-204ENST00000540738 NAIPQ13075 1403 aa17.54■□□□□ 0.4
COLCA1-204ENST00000540738 PPP1R1BQ9UD71 204 aaPredicted RBP17.54■□□□□ 0.4
COLCA1-204ENST00000540738 MARCH6O60337 910 aa17.54■□□□□ 0.4
COLCA1-204ENST00000540738 BRD4O60885 1362 aaPredicted RBP17.53■□□□□ 0.4
COLCA1-204ENST00000540738 UBAP1LF5GYI3 381 aa17.53■□□□□ 0.4
COLCA1-204ENST00000540738 ZBED9Q6R2W3 1325 aa17.53■□□□□ 0.4
COLCA1-204ENST00000540738 ANKRD45Q5TZF3 282 aa17.53■□□□□ 0.4
COLCA1-204ENST00000540738 ADAMTS12P58397 1594 aa17.53■□□□□ 0.4
COLCA1-204ENST00000540738 RILPL2Q969X0 211 aa17.53■□□□□ 0.4
COLCA1-204ENST00000540738 AKAP17AQ02040 695 aaKnown RBP17.52■□□□□ 0.4
COLCA1-204ENST00000540738 PLCB2Q00722 1185 aa17.52■□□□□ 0.39
COLCA1-204ENST00000540738 WAPLQ7Z5K2 1190 aa17.52■□□□□ 0.39
COLCA1-204ENST00000540738 NCOA1Q15788 1441 aa17.52■□□□□ 0.39
COLCA1-204ENST00000540738 ANO8Q9HCE9 1232 aaPredicted RBP17.52■□□□□ 0.39
COLCA1-204ENST00000540738 ADAMTS2O95450 1211 aa17.51■□□□□ 0.39
COLCA1-204ENST00000540738 PPP2R1AP30153 589 aa17.51■□□□□ 0.39
COLCA1-204ENST00000540738 KDM5BQ9UGL1 1544 aa17.51■□□□□ 0.39
COLCA1-204ENST00000540738 UHRF1BP1LA0JNW5 1464 aa17.51■□□□□ 0.39
COLCA1-204ENST00000540738 CPLX2Q6PUV4 134 aaKnown RBP17.51■□□□□ 0.39
COLCA1-204ENST00000540738 A2MP01023 1474 aa17.51■□□□□ 0.39
COLCA1-204ENST00000540738 UBTFL1P0CB47 393 aaPredicted RBP17.51■□□□□ 0.39
COLCA1-204ENST00000540738 THOC2Q8NI27 1593 aaKnown RBP17.5■□□□□ 0.39
COLCA1-204ENST00000540738 VPS53Q5VIR6 699 aa17.5■□□□□ 0.39
COLCA1-204ENST00000540738 RASSF8Q8NHQ8 419 aa17.5■□□□□ 0.39
COLCA1-204ENST00000540738 CWC22Q9HCG8 908 aaKnown RBP17.5■□□□□ 0.39
COLCA1-204ENST00000540738 FOXO3O43524 673 aa17.5■□□□□ 0.39
COLCA1-204ENST00000540738 MFAP1P55081 439 aaKnown RBP17.5■□□□□ 0.39
COLCA1-204ENST00000540738 TCP11L2Q8N4U5 519 aa17.5■□□□□ 0.39
COLCA1-204ENST00000540738 EIF4G3O43432 1585 aaKnown RBP17.5■□□□□ 0.39
COLCA1-204ENST00000540738 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.49■□□□□ 0.39
COLCA1-204ENST00000540738 WASLO00401 505 aaPredicted RBP17.49■□□□□ 0.39
COLCA1-204ENST00000540738 APPP05067 770 aa17.49■□□□□ 0.39
COLCA1-204ENST00000540738 GNAI3P08754 354 aa17.49■□□□□ 0.39
COLCA1-204ENST00000540738 ABCC10Q5T3U5 1492 aa17.48■□□□□ 0.39
COLCA1-204ENST00000540738 ERC2O15083 957 aa17.48■□□□□ 0.39
COLCA1-204ENST00000540738 GPATCH8Q9UKJ3 1502 aaKnown RBP17.48■□□□□ 0.39
COLCA1-204ENST00000540738 ST18O60284 1047 aa17.48■□□□□ 0.39
COLCA1-204ENST00000540738 PTMSP20962 102 aa17.48■□□□□ 0.39
COLCA1-204ENST00000540738 ABCC2Q92887 1545 aa17.48■□□□□ 0.39
COLCA1-204ENST00000540738 UGGT2Q9NYU1 1516 aa17.48■□□□□ 0.39
COLCA1-204ENST00000540738 KIF21AQ7Z4S6 1674 aa17.47■□□□□ 0.39
COLCA1-204ENST00000540738 AAMPQ13685 434 aa17.47■□□□□ 0.39
COLCA1-204ENST00000540738 COG6Q9Y2V7 657 aa17.47■□□□□ 0.39
COLCA1-204ENST00000540738 KRT28Q7Z3Y7 464 aa17.47■□□□□ 0.39
COLCA1-204ENST00000540738 FAM177BA6PVY3 158 aa17.47■□□□□ 0.39
COLCA1-204ENST00000540738 TRDNQ13061 729 aa17.47■□□□□ 0.39
COLCA1-204ENST00000540738 CENPQQ7L2Z9 268 aaPredicted RBP17.46■□□□□ 0.39
COLCA1-204ENST00000540738 RAD21O60216 631 aa17.46■□□□□ 0.39
COLCA1-204ENST00000540738 HDGFL1Q5TGJ6 251 aa17.46■□□□□ 0.39
COLCA1-204ENST00000540738 CSPP1Q1MSJ5 1256 aa17.46■□□□□ 0.38
COLCA1-204ENST00000540738 NBPF8Q3BBV2 869 aa17.46■□□□□ 0.38
COLCA1-204ENST00000540738 NEUROD6Q96NK8 337 aa17.45■□□□□ 0.38
COLCA1-204ENST00000540738 STARD3NLO95772 234 aa17.45■□□□□ 0.38
COLCA1-204ENST00000540738 ZKSCAN1P17029 563 aaPredicted RBP17.45■□□□□ 0.38
COLCA1-204ENST00000540738 GBP4Q96PP9 640 aa17.45■□□□□ 0.38
COLCA1-204ENST00000540738 TCEAL9Q9UHQ7 104 aa17.44■□□□□ 0.38
COLCA1-204ENST00000540738 NUP160Q12769 1436 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms