RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 PREX1Q8TCU6 1659 aa12.18□□□□□ -0.46
CTNNA1-243ENST00000540387 GTF2E1P29083 439 aaPredicted RBP12.18□□□□□ -0.46
CTNNA1-243ENST00000540387 STAG3Q9UJ98 1225 aa12.18□□□□□ -0.46
CTNNA1-243ENST00000540387 NUTM2DQ5VT03 806 aaPredicted RBP12.17□□□□□ -0.46
CTNNA1-243ENST00000540387 NAP1L2Q9ULW6 460 aaPredicted RBP12.17□□□□□ -0.46
CTNNA1-243ENST00000540387 TNRQ92752 1358 aa12.16□□□□□ -0.46
CTNNA1-243ENST00000540387 SPATA31D1Q6ZQQ2 1576 aa12.16□□□□□ -0.46
CTNNA1-243ENST00000540387 SMAP1Q8IYB5 467 aaPredicted RBP12.16□□□□□ -0.46
CTNNA1-243ENST00000540387 TAF7LQ5H9L4 462 aa12.15□□□□□ -0.46
CTNNA1-243ENST00000540387 UHRF1BP1Q6BDS2 1440 aa12.15□□□□□ -0.46
CTNNA1-243ENST00000540387 KIAA1211Q6ZU35 1233 aa12.15□□□□□ -0.46
CTNNA1-243ENST00000540387 ADGRF5Q8IZF2 1346 aa12.15□□□□□ -0.46
CTNNA1-243ENST00000540387 ZHX1Q9UKY1 873 aaPredicted RBP12.15□□□□□ -0.46
CTNNA1-243ENST00000540387 PIK3C2BO00750 1634 aa12.15□□□□□ -0.46
CTNNA1-243ENST00000540387 NBPF1Q3BBV0 1214 aa12.14□□□□□ -0.47
CTNNA1-243ENST00000540387 MADDQ8WXG6 1647 aa12.14□□□□□ -0.47
CTNNA1-243ENST00000540387 ADGRB3O60242 1522 aa12.14□□□□□ -0.47
CTNNA1-243ENST00000540387 PRAG1Q86YV5 1406 aa12.14□□□□□ -0.47
CTNNA1-243ENST00000540387 FER1L4A9Z1Z3 1794 aa12.14□□□□□ -0.47
CTNNA1-243ENST00000540387 STAC3Q96MF2 364 aa12.14□□□□□ -0.47
CTNNA1-243ENST00000540387 RPGRIP1LQ68CZ1 1315 aa12.13□□□□□ -0.47
CTNNA1-243ENST00000540387 CHMP4BQ9H444 224 aaKnown RBP12.13□□□□□ -0.47
CTNNA1-243ENST00000540387 MYH16Q9H6N6 1097 aa12.13□□□□□ -0.47
CTNNA1-243ENST00000540387 KIF1BO60333 1816 aa12.13□□□□□ -0.47
CTNNA1-243ENST00000540387 MAP7D2Q96T17 732 aa12.13□□□□□ -0.47
CTNNA1-243ENST00000540387 KTN1Q86UP2 1357 aaKnown RBP12.12□□□□□ -0.47
CTNNA1-243ENST00000540387 MROH2AA6NES4 1674 aa12.12□□□□□ -0.47
CTNNA1-243ENST00000540387 MRE11P49959 708 aa12.12□□□□□ -0.47
CTNNA1-243ENST00000540387 RIPK4P57078 832 aa12.12□□□□□ -0.47
CTNNA1-243ENST00000540387 PNISRQ8TF01 805 aaKnown RBP12.12□□□□□ -0.47
CTNNA1-243ENST00000540387 GZF1Q9H116 711 aaPredicted RBP12.12□□□□□ -0.47
CTNNA1-243ENST00000540387 SLKQ9H2G2 1235 aaPredicted RBP12.12□□□□□ -0.47
CTNNA1-243ENST00000540387 NEURL4Q96JN8 1562 aa12.12□□□□□ -0.47
CTNNA1-243ENST00000540387 ADAMTSL3P82987 1691 aa12.12□□□□□ -0.47
CTNNA1-243ENST00000540387 CANXP27824 592 aaKnown RBP12.12□□□□□ -0.47
CTNNA1-243ENST00000540387 CNGB1Q14028 1251 aaPredicted RBP12.12□□□□□ -0.47
CTNNA1-243ENST00000540387 C3P01024 1663 aa12.11□□□□□ -0.47
CTNNA1-243ENST00000540387 KIF7Q2M1P5 1343 aa12.11□□□□□ -0.47
CTNNA1-243ENST00000540387 CARD11Q9BXL7 1154 aa12.11□□□□□ -0.47
CTNNA1-243ENST00000540387 VGFO15240 615 aaPredicted RBP12.11□□□□□ -0.47
CTNNA1-243ENST00000540387 CFAP70Q5T0N1 1121 aa12.11□□□□□ -0.47
CTNNA1-243ENST00000540387 CRBNQ96SW2 442 aa12.11□□□□□ -0.47
CTNNA1-243ENST00000540387 KDM2BQ8NHM5 1336 aa12.1□□□□□ -0.47
CTNNA1-243ENST00000540387 A2ML1A8K2U0 1454 aa12.1□□□□□ -0.47
CTNNA1-243ENST00000540387 RIMS1Q86UR5 1692 aaKnown RBP12.1□□□□□ -0.47
CTNNA1-243ENST00000540387 TMEM131LA2VDJ0 1609 aa12.1□□□□□ -0.47
CTNNA1-243ENST00000540387 PLIN1O60240 522 aa12.1□□□□□ -0.47
CTNNA1-243ENST00000540387 ROCK2O75116 1388 aaKnown RBP12.1□□□□□ -0.47
CTNNA1-243ENST00000540387 TRIM44Q96DX7 344 aaPredicted RBP12.09□□□□□ -0.47
CTNNA1-243ENST00000540387 FAM13BQ9NYF5 915 aa12.09□□□□□ -0.47
CTNNA1-243ENST00000540387 ANTXR1Q9H6X2 564 aa12.08□□□□□ -0.48
CTNNA1-243ENST00000540387 POLR1AO95602 1720 aaPredicted RBP12.08□□□□□ -0.48
CTNNA1-243ENST00000540387 RALGAPBQ86X10 1494 aa12.08□□□□□ -0.48
CTNNA1-243ENST00000540387 KDM4FA0A1W2PPD8 638 aa12.08□□□□□ -0.48
CTNNA1-243ENST00000540387 GRPEL1Q9HAV7 217 aa12.08□□□□□ -0.48
CTNNA1-243ENST00000540387 PRDM10Q9NQV6 1147 aa12.07□□□□□ -0.48
CTNNA1-243ENST00000540387 PTPRMP28827 1452 aa12.07□□□□□ -0.48
CTNNA1-243ENST00000540387 MYOM2P54296 1465 aa12.07□□□□□ -0.48
CTNNA1-243ENST00000540387 BECN1Q14457 450 aa12.07□□□□□ -0.48
CTNNA1-243ENST00000540387 IPO4Q8TEX9 1081 aaKnown RBP12.07□□□□□ -0.48
CTNNA1-243ENST00000540387 NLRP1Q9C000 1473 aa12.07□□□□□ -0.48
CTNNA1-243ENST00000540387 NEXMIFQ5QGS0 1516 aa12.07□□□□□ -0.48
CTNNA1-243ENST00000540387 UTP14CQ5TAP6 766 aaKnown RBP12.06□□□□□ -0.48
CTNNA1-243ENST00000540387 CENPQQ7L2Z9 268 aaPredicted RBP12.06□□□□□ -0.48
CTNNA1-243ENST00000540387 RIMS2Q9UQ26 1411 aa12.06□□□□□ -0.48
CTNNA1-243ENST00000540387 TMC1Q8TDI8 760 aa12.06□□□□□ -0.48
CTNNA1-243ENST00000540387 C14orf93Q9H972 538 aaKnown RBP12.06□□□□□ -0.48
CTNNA1-243ENST00000540387 USP19O94966 1318 aa12.06□□□□□ -0.48
CTNNA1-243ENST00000540387 NCLP19338 710 aaKnown RBP12.05□□□□□ -0.48
CTNNA1-243ENST00000540387 DMTNQ08495 405 aa12.05□□□□□ -0.48
CTNNA1-243ENST00000540387 USP47Q96K76 1375 aa12.05□□□□□ -0.48
CTNNA1-243ENST00000540387 NRXN1Q9ULB1 1477 aa12.05□□□□□ -0.48
CTNNA1-243ENST00000540387 MYO5BQ9ULV0 1848 aa12.05□□□□□ -0.48
CTNNA1-243ENST00000540387 OFD1O75665 1012 aa12.05□□□□□ -0.48
CTNNA1-243ENST00000540387 LTKP29376 864 aa12.05□□□□□ -0.48
CTNNA1-243ENST00000540387 TERF1P54274 439 aa12.05□□□□□ -0.48
CTNNA1-243ENST00000540387 TMEM132EQ6IEE7 984 aa12.05□□□□□ -0.48
CTNNA1-243ENST00000540387 THEMISQ8N1K5 641 aaPredicted RBP12.05□□□□□ -0.48
CTNNA1-243ENST00000540387 LRPPRCP42704 1394 aaKnown RBP12.05□□□□□ -0.48
CTNNA1-243ENST00000540387 TMEM2Q9UHN6 1383 aa12.05□□□□□ -0.48
CTNNA1-243ENST00000540387 MCM4P33991 863 aa12.04□□□□□ -0.48
CTNNA1-243ENST00000540387 GPRASP1Q5JY77 1395 aa12.04□□□□□ -0.48
CTNNA1-243ENST00000540387 PIK3C2GO75747 1445 aa12.04□□□□□ -0.48
CTNNA1-243ENST00000540387 ZFYVE9O95405 1425 aa12.04□□□□□ -0.48
CTNNA1-243ENST00000540387 ST20-MTHFSA0A0A6YYL1 179 aa12.04□□□□□ -0.48
CTNNA1-243ENST00000540387 HDGFP51858 240 aaKnown RBP12.04□□□□□ -0.48
CTNNA1-243ENST00000540387 TXNDC2Q86VQ3 553 aa12.04□□□□□ -0.48
CTNNA1-243ENST00000540387 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.04□□□□□ -0.48
CTNNA1-243ENST00000540387 TRPM1Q7Z4N2 1603 aa12.03□□□□□ -0.48
CTNNA1-243ENST00000540387 PPLO60437 1756 aa12.03□□□□□ -0.48
CTNNA1-243ENST00000540387 IFT172Q9UG01 1749 aa12.03□□□□□ -0.48
CTNNA1-243ENST00000540387 ARID3AQ99856 593 aa12.03□□□□□ -0.48
CTNNA1-243ENST00000540387 TRAK2O60296 914 aa12.03□□□□□ -0.48
CTNNA1-243ENST00000540387 PAXIP1Q6ZW49 1069 aaPredicted RBP12.03□□□□□ -0.48
CTNNA1-243ENST00000540387 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.02□□□□□ -0.49
CTNNA1-243ENST00000540387 PDE3BQ13370 1112 aa12.02□□□□□ -0.49
CTNNA1-243ENST00000540387 VIRMAQ69YN4 1812 aaKnown RBP12.01□□□□□ -0.49
CTNNA1-243ENST00000540387 PPP4R3BQ5MIZ7 849 aa12.01□□□□□ -0.49
CTNNA1-243ENST00000540387 TMEM51Q9NW97 253 aa12.01□□□□□ -0.49
CTNNA1-243ENST00000540387 ISY1Q9ULR0 285 aaKnown RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms