RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 SIRT1Q96EB6 747 aa26.55■■□□□ 1.84
TNFRSF1A-213ENST00000540022 TESK2Q96S53 571 aa26.55■■□□□ 1.84
TNFRSF1A-213ENST00000540022 ARHGEF28Q8N1W1 1705 aaKnown RBP26.55■■□□□ 1.84
TNFRSF1A-213ENST00000540022 WAPLQ7Z5K2 1190 aa26.55■■□□□ 1.84
TNFRSF1A-213ENST00000540022 PLEKHH1Q9ULM0 1364 aa26.54■■□□□ 1.84
TNFRSF1A-213ENST00000540022 ZNF316A6NFI3 1004 aaPredicted RBP26.54■■□□□ 1.84
TNFRSF1A-213ENST00000540022 KNDC1Q76NI1 1749 aa26.53■■□□□ 1.84
TNFRSF1A-213ENST00000540022 SAFB2Q14151 953 aaKnown RBP eCLIP26.53■■□□□ 1.84
TNFRSF1A-213ENST00000540022 POGKQ9P215 609 aa26.53■■□□□ 1.84
TNFRSF1A-213ENST00000540022 FAM135BQ49AJ0 1406 aa26.53■■□□□ 1.84
TNFRSF1A-213ENST00000540022 PTCH1Q13635 1447 aa26.52■■□□□ 1.84
TNFRSF1A-213ENST00000540022 MSH6P52701 1360 aa26.51■■□□□ 1.83
TNFRSF1A-213ENST00000540022 NCOA3Q9Y6Q9 1424 aa26.5■■□□□ 1.83
TNFRSF1A-213ENST00000540022 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.49■■□□□ 1.83
TNFRSF1A-213ENST00000540022 SBNO2Q9Y2G9 1366 aa26.48■■□□□ 1.83
TNFRSF1A-213ENST00000540022 ROBO1Q9Y6N7 1651 aa26.48■■□□□ 1.83
TNFRSF1A-213ENST00000540022 C11orf95C9JLR9 678 aaPredicted RBP26.48■■□□□ 1.83
TNFRSF1A-213ENST00000540022 MINK1Q8N4C8 1332 aaPredicted RBP26.44■■□□□ 1.82
TNFRSF1A-213ENST00000540022 DISP3Q9P2K9 1392 aa26.44■■□□□ 1.82
TNFRSF1A-213ENST00000540022 QRICH2Q9H0J4 1663 aa26.44■■□□□ 1.82
TNFRSF1A-213ENST00000540022 TMF1P82094 1093 aa26.43■■□□□ 1.82
TNFRSF1A-213ENST00000540022 C14orf37Q86TY3 774 aa26.4■■□□□ 1.82
TNFRSF1A-213ENST00000540022 SLC24A1O60721 1099 aa26.39■■□□□ 1.82
TNFRSF1A-213ENST00000540022 C19orf44Q9H6X5 657 aa26.39■■□□□ 1.82
TNFRSF1A-213ENST00000540022 SLAIN2Q9P270 581 aa26.39■■□□□ 1.82
TNFRSF1A-213ENST00000540022 KIF7Q2M1P5 1343 aa26.39■■□□□ 1.81
TNFRSF1A-213ENST00000540022 WASHC2AQ641Q2 1341 aa26.39■■□□□ 1.81
TNFRSF1A-213ENST00000540022 ADGRL3Q9HAR2 1447 aa26.37■■□□□ 1.81
TNFRSF1A-213ENST00000540022 MED1Q15648 1581 aaPredicted RBP26.37■■□□□ 1.81
TNFRSF1A-213ENST00000540022 NALCNQ8IZF0 1738 aa26.37■■□□□ 1.81
TNFRSF1A-213ENST00000540022 CCDC7Q96M83 1385 aa26.37■■□□□ 1.81
TNFRSF1A-213ENST00000540022 TULP4Q9NRJ4 1543 aa26.37■■□□□ 1.81
TNFRSF1A-213ENST00000540022 EVC2Q86UK5 1308 aa26.36■■□□□ 1.81
TNFRSF1A-213ENST00000540022 CADPS2Q86UW7 1296 aa26.34■■□□□ 1.81
TNFRSF1A-213ENST00000540022 DCCP43146 1447 aa26.33■■□□□ 1.81
TNFRSF1A-213ENST00000540022 POLR3GLQ9BT43 218 aa26.33■■□□□ 1.81
TNFRSF1A-213ENST00000540022 WASLO00401 505 aaPredicted RBP26.32■■□□□ 1.8
TNFRSF1A-213ENST00000540022 ATF3P18847 181 aa26.32■■□□□ 1.8
TNFRSF1A-213ENST00000540022 CDK19Q9BWU1 502 aa26.32■■□□□ 1.8
TNFRSF1A-213ENST00000540022 PHLPP1O60346 1717 aa26.32■■□□□ 1.8
TNFRSF1A-213ENST00000540022 CDCA8Q53HL2 280 aa26.31■■□□□ 1.8
TNFRSF1A-213ENST00000540022 ADGRB2O60241 1585 aa26.31■■□□□ 1.8
TNFRSF1A-213ENST00000540022 CABP2Q9NPB3 220 aa26.3■■□□□ 1.8
TNFRSF1A-213ENST00000540022 SRPK2P78362 688 aaKnown RBP26.29■■□□□ 1.8
TNFRSF1A-213ENST00000540022 PUS7Q96PZ0 661 aaKnown RBP26.27■■□□□ 1.8
TNFRSF1A-213ENST00000540022 NUTM2FA1L443 756 aa26.26■■□□□ 1.79
TNFRSF1A-213ENST00000540022 ILDR2Q71H61 639 aa26.26■■□□□ 1.79
TNFRSF1A-213ENST00000540022 MST1RQ04912 1400 aa26.26■■□□□ 1.79
TNFRSF1A-213ENST00000540022 COL16A1Q07092 1604 aaPredicted RBP26.25■■□□□ 1.79
TNFRSF1A-213ENST00000540022 CDC42BPGQ6DT37 1551 aa26.24■■□□□ 1.79
TNFRSF1A-213ENST00000540022 AHDC1Q5TGY3 1603 aaPredicted RBP26.23■■□□□ 1.79
TNFRSF1A-213ENST00000540022 DDX10Q13206 875 aaKnown RBP26.22■■□□□ 1.79
TNFRSF1A-213ENST00000540022 PRR36Q9H6K5 1346 aa26.21■■□□□ 1.79
TNFRSF1A-213ENST00000540022 ATAD2Q6PL18 1390 aa26.2■■□□□ 1.79
TNFRSF1A-213ENST00000540022 BRINP3Q76B58 766 aa26.2■■□□□ 1.79
TNFRSF1A-213ENST00000540022 NUDT16Q96DE0 195 aaKnown RBP26.19■■□□□ 1.78
TNFRSF1A-213ENST00000540022 ATP7BP35670 1465 aa26.18■■□□□ 1.78
TNFRSF1A-213ENST00000540022 NHSL1Q5SYE7 1610 aa26.18■■□□□ 1.78
TNFRSF1A-213ENST00000540022 FMN2Q9NZ56 1722 aa26.17■■□□□ 1.78
TNFRSF1A-213ENST00000540022 C1orf167Q5SNV9 1468 aa26.17■■□□□ 1.78
TNFRSF1A-213ENST00000540022 TMC1Q8TDI8 760 aa26.16■■□□□ 1.78
TNFRSF1A-213ENST00000540022 SLC12A5Q9H2X9 1139 aa26.16■■□□□ 1.78
TNFRSF1A-213ENST00000540022 ORAI2Q96SN7 254 aa26.15■■□□□ 1.78
TNFRSF1A-213ENST00000540022 CCDC61Q9Y6R9 512 aa26.14■■□□□ 1.78
TNFRSF1A-213ENST00000540022 ANKARQ7Z5J8 1434 aa26.14■■□□□ 1.77
TNFRSF1A-213ENST00000540022 CABP1Q9NZU7 370 aa26.14■■□□□ 1.77
TNFRSF1A-213ENST00000540022 USP32Q8NFA0 1604 aa26.13■■□□□ 1.77
TNFRSF1A-213ENST00000540022 JCADQ9P266 1359 aa26.13■■□□□ 1.77
TNFRSF1A-213ENST00000540022 MYOM1P52179 1685 aa26.13■■□□□ 1.77
TNFRSF1A-213ENST00000540022 PPIP5K1Q6PFW1 1433 aa26.11■■□□□ 1.77
TNFRSF1A-213ENST00000540022 SHPRHQ149N8 1683 aa26.11■■□□□ 1.77
TNFRSF1A-213ENST00000540022 NINLQ9Y2I6 1382 aa26.11■■□□□ 1.77
TNFRSF1A-213ENST00000540022 ESCO1Q5FWF5 840 aa26.1■■□□□ 1.77
TNFRSF1A-213ENST00000540022 PHF23Q9BUL5 403 aaPredicted RBP26.09■■□□□ 1.77
TNFRSF1A-213ENST00000540022 PANK3Q9H999 370 aa26.09■■□□□ 1.77
TNFRSF1A-213ENST00000540022 DDX17Q92841 729 aaKnown RBP26.08■■□□□ 1.77
TNFRSF1A-213ENST00000540022 RGPD8O14715 1765 aaPredicted RBP26.07■■□□□ 1.76
TNFRSF1A-213ENST00000540022 PLEKHG3A1L390 1219 aa26.06■■□□□ 1.76
TNFRSF1A-213ENST00000540022 TOPAZ1Q8N9V7 1692 aa26.05■■□□□ 1.76
TNFRSF1A-213ENST00000540022 CD163L1Q9NR16 1453 aa26.05■■□□□ 1.76
TNFRSF1A-213ENST00000540022 PMFBP1Q8TBY8 1022 aa26.05■■□□□ 1.76
TNFRSF1A-213ENST00000540022 ANKRD36BQ8N2N9 1353 aa26.05■■□□□ 1.76
TNFRSF1A-213ENST00000540022 RGS17Q9UGC6 210 aaPredicted RBP26.04■■□□□ 1.76
TNFRSF1A-213ENST00000540022 A0A1W2PP64 1363 aa26.03■■□□□ 1.76
TNFRSF1A-213ENST00000540022 CARD14Q9BXL6 1004 aa26.03■■□□□ 1.76
TNFRSF1A-213ENST00000540022 TERF2IPQ9NYB0 399 aa26.03■■□□□ 1.76
TNFRSF1A-213ENST00000540022 PHF8Q9UPP1 1060 aa26.03■■□□□ 1.76
TNFRSF1A-213ENST00000540022 PER1O15534 1290 aaPredicted RBP26.02■■□□□ 1.76
TNFRSF1A-213ENST00000540022 DIEXFQ68CQ4 756 aaKnown RBP26.02■■□□□ 1.76
TNFRSF1A-213ENST00000540022 LRP6O75581 1613 aa26.01■■□□□ 1.75
TNFRSF1A-213ENST00000540022 ACEP12821 1306 aa26.01■■□□□ 1.75
TNFRSF1A-213ENST00000540022 CPSF1Q10570 1443 aaKnown RBP26.01■■□□□ 1.75
TNFRSF1A-213ENST00000540022 HDGFL2Q7Z4V5 671 aaPredicted RBP26.01■■□□□ 1.75
TNFRSF1A-213ENST00000540022 SPATA31A6Q5VVP1 1343 aa26■■□□□ 1.75
TNFRSF1A-213ENST00000540022 FOXO3O43524 673 aa26■■□□□ 1.75
TNFRSF1A-213ENST00000540022 POLR3AO14802 1390 aaPredicted RBP25.99■■□□□ 1.75
TNFRSF1A-213ENST00000540022 ITSN1Q15811 1721 aa25.99■■□□□ 1.75
TNFRSF1A-213ENST00000540022 XPCQ01831 940 aaPredicted RBP25.98■■□□□ 1.75
TNFRSF1A-213ENST00000540022 NGDNQ8NEJ9 315 aaKnown RBP25.98■■□□□ 1.75
TNFRSF1A-213ENST00000540022 SOCS7O14512 581 aa25.97■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms