RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 ZMYM3Q14202 1370 aa12.9□□□□□ -0.34
TRAF1-202ENST00000540010 CGNL1Q0VF96 1302 aa12.9□□□□□ -0.34
TRAF1-202ENST00000540010 KDM5AP29375 1690 aaKnown RBP12.9□□□□□ -0.34
TRAF1-202ENST00000540010 CARD14Q9BXL6 1004 aa12.89□□□□□ -0.35
TRAF1-202ENST00000540010 NSD3Q9BZ95 1437 aa12.89□□□□□ -0.35
TRAF1-202ENST00000540010 LRPPRCP42704 1394 aaKnown RBP12.89□□□□□ -0.35
TRAF1-202ENST00000540010 SBNO2Q9Y2G9 1366 aa12.89□□□□□ -0.35
TRAF1-202ENST00000540010 CCDC146Q8IYE0 955 aa12.89□□□□□ -0.35
TRAF1-202ENST00000540010 CFAP53Q96M91 514 aa12.89□□□□□ -0.35
TRAF1-202ENST00000540010 GLIPR1L2Q4G1C9 344 aa12.89□□□□□ -0.35
TRAF1-202ENST00000540010 TERF2IPQ9NYB0 399 aa12.88□□□□□ -0.35
TRAF1-202ENST00000540010 SMG6Q86US8 1419 aaKnown RBP12.88□□□□□ -0.35
TRAF1-202ENST00000540010 SIGLEC1Q9BZZ2 1709 aa12.88□□□□□ -0.35
TRAF1-202ENST00000540010 PDE3BQ13370 1112 aa12.88□□□□□ -0.35
TRAF1-202ENST00000540010 RIMS2Q9UQ26 1411 aa12.87□□□□□ -0.35
TRAF1-202ENST00000540010 HDGFL2Q7Z4V5 671 aaPredicted RBP12.87□□□□□ -0.35
TRAF1-202ENST00000540010 CEBPAP49715 358 aaPredicted RBP12.87□□□□□ -0.35
TRAF1-202ENST00000540010 AGLP35573 1532 aa12.87□□□□□ -0.35
TRAF1-202ENST00000540010 SETBP1Q9Y6X0 1596 aa12.87□□□□□ -0.35
TRAF1-202ENST00000540010 PPLO60437 1756 aa12.87□□□□□ -0.35
TRAF1-202ENST00000540010 NEXMIFQ5QGS0 1516 aa12.87□□□□□ -0.35
TRAF1-202ENST00000540010 RCAN3Q9UKA8 241 aa12.86□□□□□ -0.35
TRAF1-202ENST00000540010 TNRQ92752 1358 aa12.86□□□□□ -0.35
TRAF1-202ENST00000540010 PREX1Q8TCU6 1659 aa12.86□□□□□ -0.35
TRAF1-202ENST00000540010 ERICH6BQ5W0A0 696 aa12.86□□□□□ -0.35
TRAF1-202ENST00000540010 CLTCQ00610 1675 aaKnown RBP12.85□□□□□ -0.35
TRAF1-202ENST00000540010 PIK3C2BO00750 1634 aa12.85□□□□□ -0.35
TRAF1-202ENST00000540010 WAPLQ7Z5K2 1190 aa12.85□□□□□ -0.35
TRAF1-202ENST00000540010 TRIM44Q96DX7 344 aaPredicted RBP12.85□□□□□ -0.35
TRAF1-202ENST00000540010 CDK19Q9BWU1 502 aa12.85□□□□□ -0.35
TRAF1-202ENST00000540010 YTHDC2Q9H6S0 1430 aaKnown RBP12.85□□□□□ -0.35
TRAF1-202ENST00000540010 CDCA7LQ96GN5 454 aa12.85□□□□□ -0.35
TRAF1-202ENST00000540010 EID1Q9Y6B2 187 aa12.85□□□□□ -0.35
TRAF1-202ENST00000540010 IFT172Q9UG01 1749 aa12.85□□□□□ -0.35
TRAF1-202ENST00000540010 ZFYVE9O95405 1425 aa12.85□□□□□ -0.35
TRAF1-202ENST00000540010 SPRYD3Q8NCJ5 442 aa12.84□□□□□ -0.35
TRAF1-202ENST00000540010 TXNDC2Q86VQ3 553 aa12.84□□□□□ -0.35
TRAF1-202ENST00000540010 FTSJ3Q8IY81 847 aaKnown RBP12.84□□□□□ -0.35
TRAF1-202ENST00000540010 ARHGEF40Q8TER5 1519 aa12.84□□□□□ -0.35
TRAF1-202ENST00000540010 NPC1L1Q9UHC9 1359 aa12.84□□□□□ -0.35
TRAF1-202ENST00000540010 ADGRB1O14514 1584 aa12.83□□□□□ -0.36
TRAF1-202ENST00000540010 NCLP19338 710 aaKnown RBP12.83□□□□□ -0.36
TRAF1-202ENST00000540010 GGNBP2Q9H3C7 697 aa12.82□□□□□ -0.36
TRAF1-202ENST00000540010 ATAD2Q6PL18 1390 aa12.82□□□□□ -0.36
TRAF1-202ENST00000540010 APAF1O14727 1248 aa12.82□□□□□ -0.36
TRAF1-202ENST00000540010 MTHFSP49914 203 aa12.82□□□□□ -0.36
TRAF1-202ENST00000540010 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.82□□□□□ -0.36
TRAF1-202ENST00000540010 IPO9Q96P70 1041 aaKnown RBP12.82□□□□□ -0.36
TRAF1-202ENST00000540010 CABP1Q9NZU7 370 aa12.81□□□□□ -0.36
TRAF1-202ENST00000540010 PUS7Q96PZ0 661 aaKnown RBP12.81□□□□□ -0.36
TRAF1-202ENST00000540010 REREQ9P2R6 1566 aa12.81□□□□□ -0.36
TRAF1-202ENST00000540010 TPRNQ4KMQ1 711 aa12.81□□□□□ -0.36
TRAF1-202ENST00000540010 MYH16Q9H6N6 1097 aa12.81□□□□□ -0.36
TRAF1-202ENST00000540010 QRICH2Q9H0J4 1663 aa12.81□□□□□ -0.36
TRAF1-202ENST00000540010 A2ML1A8K2U0 1454 aa12.81□□□□□ -0.36
TRAF1-202ENST00000540010 KIF13AQ9H1H9 1805 aa12.81□□□□□ -0.36
TRAF1-202ENST00000540010 TMEM131LA2VDJ0 1609 aa12.8□□□□□ -0.36
TRAF1-202ENST00000540010 U2SURPO15042 1029 aaKnown RBP12.8□□□□□ -0.36
TRAF1-202ENST00000540010 GOLGA2Q08379 1002 aa12.8□□□□□ -0.36
TRAF1-202ENST00000540010 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.8□□□□□ -0.36
TRAF1-202ENST00000540010 ANKRD36BQ8N2N9 1353 aa12.8□□□□□ -0.36
TRAF1-202ENST00000540010 U2AF1L5P0DN76 240 aaPredicted RBP12.79□□□□□ -0.36
TRAF1-202ENST00000540010 U2AF1Q01081 240 aaKnown RBP eCLIP12.79□□□□□ -0.36
TRAF1-202ENST00000540010 NAP1L5Q96NT1 182 aaPredicted RBP12.79□□□□□ -0.36
TRAF1-202ENST00000540010 SLKQ9H2G2 1235 aaPredicted RBP12.79□□□□□ -0.36
TRAF1-202ENST00000540010 NUTM2FA1L443 756 aa12.78□□□□□ -0.36
TRAF1-202ENST00000540010 SLC26A8Q96RN1 970 aa12.78□□□□□ -0.36
TRAF1-202ENST00000540010 PLEKHG5O94827 1062 aa12.78□□□□□ -0.36
TRAF1-202ENST00000540010 RRP1P56182 461 aaKnown RBP12.78□□□□□ -0.36
TRAF1-202ENST00000540010 TCERG1O14776 1098 aaKnown RBP12.77□□□□□ -0.37
TRAF1-202ENST00000540010 MYO5BQ9ULV0 1848 aa12.77□□□□□ -0.37
TRAF1-202ENST00000540010 NINLQ9Y2I6 1382 aa12.77□□□□□ -0.37
TRAF1-202ENST00000540010 ALKQ9UM73 1620 aa12.77□□□□□ -0.37
TRAF1-202ENST00000540010 RRP7AQ9Y3A4 280 aaKnown RBP12.76□□□□□ -0.37
TRAF1-202ENST00000540010 A0A1W2PP64 1363 aa12.76□□□□□ -0.37
TRAF1-202ENST00000540010 PLIN1O60240 522 aa12.76□□□□□ -0.37
TRAF1-202ENST00000540010 SLC4A3P48751 1232 aa12.76□□□□□ -0.37
TRAF1-202ENST00000540010 BLMP54132 1417 aaPredicted RBP12.76□□□□□ -0.37
TRAF1-202ENST00000540010 SPATA31D1Q6ZQQ2 1576 aa12.76□□□□□ -0.37
TRAF1-202ENST00000540010 MYO3AQ8NEV4 1616 aa12.76□□□□□ -0.37
TRAF1-202ENST00000540010 GOLGA6L22H0YM25 854 aa12.75□□□□□ -0.37
TRAF1-202ENST00000540010 MYOM1P52179 1685 aa12.75□□□□□ -0.37
TRAF1-202ENST00000540010 THEMISQ8N1K5 641 aaPredicted RBP12.75□□□□□ -0.37
TRAF1-202ENST00000540010 TULP4Q9NRJ4 1543 aa12.75□□□□□ -0.37
TRAF1-202ENST00000540010 TMEM2Q9UHN6 1383 aa12.74□□□□□ -0.37
TRAF1-202ENST00000540010 PLEKHH1Q9ULM0 1364 aa12.74□□□□□ -0.37
TRAF1-202ENST00000540010 WASLO00401 505 aaPredicted RBP12.74□□□□□ -0.37
TRAF1-202ENST00000540010 NSD2O96028 1365 aa12.74□□□□□ -0.37
TRAF1-202ENST00000540010 MAPK8IP3Q9UPT6 1336 aa12.74□□□□□ -0.37
TRAF1-202ENST00000540010 METP08581 1390 aa12.74□□□□□ -0.37
TRAF1-202ENST00000540010 RUNDC1Q96C34 613 aa12.74□□□□□ -0.37
TRAF1-202ENST00000540010 INSRP06213 1382 aa12.73□□□□□ -0.37
TRAF1-202ENST00000540010 GZF1Q9H116 711 aaPredicted RBP12.73□□□□□ -0.37
TRAF1-202ENST00000540010 EXOC6Q8TAG9 804 aa12.73□□□□□ -0.37
TRAF1-202ENST00000540010 POLR3AO14802 1390 aaPredicted RBP12.73□□□□□ -0.37
TRAF1-202ENST00000540010 ABCC11Q96J66 1382 aa12.73□□□□□ -0.37
TRAF1-202ENST00000540010 NUDT16Q96DE0 195 aaKnown RBP12.73□□□□□ -0.37
TRAF1-202ENST00000540010 PTPRMP28827 1452 aa12.72□□□□□ -0.37
TRAF1-202ENST00000540010 ARHGEF28Q8N1W1 1705 aaKnown RBP12.72□□□□□ -0.37
TRAF1-202ENST00000540010 FYB1O15117 783 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms