RNA–Protein interactions for RNA: ENST00000538333.3

LIMK1-208, Transcript of LIM domain kinase 1, humanhuman

TSL 2 BASIC

Gene LIMK1, Length 2,170 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-208ENST00000538333 ARHGEF40Q8TER5 1519 aa18.55■□□□□ 0.56
LIMK1-208ENST00000538333 ANKRD36BQ8N2N9 1353 aa18.54■□□□□ 0.56
LIMK1-208ENST00000538333 DUSP27Q5VZP5 1158 aa18.54■□□□□ 0.56
LIMK1-208ENST00000538333 ALKQ9UM73 1620 aa18.54■□□□□ 0.56
LIMK1-208ENST00000538333 EXOC6Q8TAG9 804 aa18.53■□□□□ 0.56
LIMK1-208ENST00000538333 YTHDC2Q9H6S0 1430 aaKnown RBP18.52■□□□□ 0.56
LIMK1-208ENST00000538333 MORC1Q86VD1 984 aa18.51■□□□□ 0.55
LIMK1-208ENST00000538333 CCDC146Q8IYE0 955 aa18.51■□□□□ 0.55
LIMK1-208ENST00000538333 CGNL1Q0VF96 1302 aa18.51■□□□□ 0.55
LIMK1-208ENST00000538333 GOLGA2Q08379 1002 aa18.51■□□□□ 0.55
LIMK1-208ENST00000538333 A2ML1A8K2U0 1454 aa18.5■□□□□ 0.55
LIMK1-208ENST00000538333 TRMT2AQ8IZ69 625 aaKnown RBP18.49■□□□□ 0.55
LIMK1-208ENST00000538333 CABP2Q9NPB3 220 aa18.49■□□□□ 0.55
LIMK1-208ENST00000538333 NSD2O96028 1365 aa18.49■□□□□ 0.55
LIMK1-208ENST00000538333 NINLQ9Y2I6 1382 aa18.49■□□□□ 0.55
LIMK1-208ENST00000538333 APAF1O14727 1248 aa18.49■□□□□ 0.55
LIMK1-208ENST00000538333 STK26Q9P289 416 aa18.49■□□□□ 0.55
LIMK1-208ENST00000538333 SETD1AO15047 1707 aaKnown RBP18.49■□□□□ 0.55
LIMK1-208ENST00000538333 SLFN5Q08AF3 891 aa18.48■□□□□ 0.55
LIMK1-208ENST00000538333 SAFB2Q14151 953 aaKnown RBP eCLIP18.48■□□□□ 0.55
LIMK1-208ENST00000538333 FANCIQ9NVI1 1328 aa18.47■□□□□ 0.55
LIMK1-208ENST00000538333 PLIN1O60240 522 aa18.47■□□□□ 0.55
LIMK1-208ENST00000538333 NGEFQ8N5V2 710 aa18.47■□□□□ 0.55
LIMK1-208ENST00000538333 SENP3Q9H4L4 574 aaPredicted RBP18.46■□□□□ 0.55
LIMK1-208ENST00000538333 A0A1W2PP64 1363 aa18.45■□□□□ 0.54
LIMK1-208ENST00000538333 PRAM1Q96QH2 718 aa18.45■□□□□ 0.54
LIMK1-208ENST00000538333 ATAD2Q6PL18 1390 aa18.45■□□□□ 0.54
LIMK1-208ENST00000538333 ABCC11Q96J66 1382 aa18.45■□□□□ 0.54
LIMK1-208ENST00000538333 TNNT2P45379 298 aaPredicted RBP18.44■□□□□ 0.54
LIMK1-208ENST00000538333 STAG3Q9UJ98 1225 aa18.44■□□□□ 0.54
LIMK1-208ENST00000538333 DLC1Q96QB1 1528 aa18.44■□□□□ 0.54
LIMK1-208ENST00000538333 SPINK5Q9NQ38 1064 aaPredicted RBP18.44■□□□□ 0.54
LIMK1-208ENST00000538333 RIMS2Q9UQ26 1411 aa18.44■□□□□ 0.54
LIMK1-208ENST00000538333 CD163L1Q9NR16 1453 aa18.43■□□□□ 0.54
LIMK1-208ENST00000538333 ANKRD26Q9UPS8 1709 aa18.43■□□□□ 0.54
LIMK1-208ENST00000538333 MTHFSP49914 203 aa18.42■□□□□ 0.54
LIMK1-208ENST00000538333 IQSEC2Q5JU85 1478 aa18.42■□□□□ 0.54
LIMK1-208ENST00000538333 MINK1Q8N4C8 1332 aaPredicted RBP18.42■□□□□ 0.54
LIMK1-208ENST00000538333 NKTRP30414 1462 aaKnown RBP18.42■□□□□ 0.54
LIMK1-208ENST00000538333 SRPK2P78362 688 aaKnown RBP18.42■□□□□ 0.54
LIMK1-208ENST00000538333 MLECQ14165 292 aa18.42■□□□□ 0.54
LIMK1-208ENST00000538333 NRXN3Q9Y4C0 1643 aa18.42■□□□□ 0.54
LIMK1-208ENST00000538333 CRBNQ96SW2 442 aa18.41■□□□□ 0.54
LIMK1-208ENST00000538333 POGKQ9P215 609 aa18.41■□□□□ 0.54
LIMK1-208ENST00000538333 E9PSI1 815 aa18.4■□□□□ 0.54
LIMK1-208ENST00000538333 DMRT2Q9Y5R5 561 aa18.4■□□□□ 0.54
LIMK1-208ENST00000538333 C20orf194Q5TEA3 1177 aa18.4■□□□□ 0.54
LIMK1-208ENST00000538333 NLRP1Q9C000 1473 aa18.39■□□□□ 0.54
LIMK1-208ENST00000538333 ZMYM3Q14202 1370 aa18.39■□□□□ 0.53
LIMK1-208ENST00000538333 MED14O60244 1454 aa18.39■□□□□ 0.53
LIMK1-208ENST00000538333 MSH5O43196 834 aa18.38■□□□□ 0.53
LIMK1-208ENST00000538333 WWC1Q8IX03 1113 aa18.38■□□□□ 0.53
LIMK1-208ENST00000538333 RUNDC1Q96C34 613 aa18.38■□□□□ 0.53
LIMK1-208ENST00000538333 CFAP53Q96M91 514 aa18.37■□□□□ 0.53
LIMK1-208ENST00000538333 PHF23Q9BUL5 403 aaPredicted RBP18.37■□□□□ 0.53
LIMK1-208ENST00000538333 TERF2IPQ9NYB0 399 aa18.36■□□□□ 0.53
LIMK1-208ENST00000538333 CDK19Q9BWU1 502 aa18.35■□□□□ 0.53
LIMK1-208ENST00000538333 KIF20BQ96Q89 1820 aa18.35■□□□□ 0.53
LIMK1-208ENST00000538333 COL3A1P02461 1466 aaPredicted RBP18.34■□□□□ 0.53
LIMK1-208ENST00000538333 ADGRB2O60241 1585 aa18.34■□□□□ 0.53
LIMK1-208ENST00000538333 FYB1O15117 783 aa18.34■□□□□ 0.53
LIMK1-208ENST00000538333 TCP11L2Q8N4U5 519 aa18.34■□□□□ 0.53
LIMK1-208ENST00000538333 ANP32EQ9BTT0 268 aa18.34■□□□□ 0.53
LIMK1-208ENST00000538333 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.33■□□□□ 0.52
LIMK1-208ENST00000538333 GGNBP2Q9H3C7 697 aa18.32■□□□□ 0.52
LIMK1-208ENST00000538333 KNDC1Q76NI1 1749 aa18.32■□□□□ 0.52
LIMK1-208ENST00000538333 NCBP3Q53F19 620 aaKnown RBP18.32■□□□□ 0.52
LIMK1-208ENST00000538333 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.32■□□□□ 0.52
LIMK1-208ENST00000538333 WAPLQ7Z5K2 1190 aa18.31■□□□□ 0.52
LIMK1-208ENST00000538333 UBR1Q8IWV7 1749 aa18.31■□□□□ 0.52
LIMK1-208ENST00000538333 ATP7BP35670 1465 aa18.31■□□□□ 0.52
LIMK1-208ENST00000538333 CCDC27Q2M243 656 aa18.31■□□□□ 0.52
LIMK1-208ENST00000538333 ESF1Q9H501 851 aaKnown RBP18.31■□□□□ 0.52
LIMK1-208ENST00000538333 METP08581 1390 aa18.3■□□□□ 0.52
LIMK1-208ENST00000538333 HDGFL2Q7Z4V5 671 aaPredicted RBP18.3■□□□□ 0.52
LIMK1-208ENST00000538333 CABP1Q9NZU7 370 aa18.3■□□□□ 0.52
LIMK1-208ENST00000538333 TNRQ92752 1358 aa18.3■□□□□ 0.52
LIMK1-208ENST00000538333 RRP7AQ9Y3A4 280 aaKnown RBP18.3■□□□□ 0.52
LIMK1-208ENST00000538333 TCERG1O14776 1098 aaKnown RBP18.29■□□□□ 0.52
LIMK1-208ENST00000538333 MYT1Q01538 1121 aa18.29■□□□□ 0.52
LIMK1-208ENST00000538333 TECPR2O15040 1411 aa18.28■□□□□ 0.52
LIMK1-208ENST00000538333 BCAR3O75815 825 aa18.28■□□□□ 0.52
LIMK1-208ENST00000538333 WDR63Q8IWG1 891 aa18.28■□□□□ 0.52
LIMK1-208ENST00000538333 KDM2BQ8NHM5 1336 aa18.28■□□□□ 0.52
LIMK1-208ENST00000538333 U2AF1L5P0DN76 240 aaPredicted RBP18.27■□□□□ 0.52
LIMK1-208ENST00000538333 U2AF1Q01081 240 aaKnown RBP eCLIP18.27■□□□□ 0.52
LIMK1-208ENST00000538333 NEUROD2Q15784 382 aa18.27■□□□□ 0.52
LIMK1-208ENST00000538333 CPS1P31327 1500 aa18.27■□□□□ 0.51
LIMK1-208ENST00000538333 PNPLA6Q8IY17 1366 aa18.26■□□□□ 0.51
LIMK1-208ENST00000538333 FAM135BQ49AJ0 1406 aa18.26■□□□□ 0.51
LIMK1-208ENST00000538333 TMEM2Q9UHN6 1383 aa18.25■□□□□ 0.51
LIMK1-208ENST00000538333 PLEKHF1Q96S99 279 aa18.25■□□□□ 0.51
LIMK1-208ENST00000538333 MS4A1P11836 297 aa18.24■□□□□ 0.51
LIMK1-208ENST00000538333 SIRT1Q96EB6 747 aa18.24■□□□□ 0.51
LIMK1-208ENST00000538333 CPSF1Q10570 1443 aaKnown RBP18.24■□□□□ 0.51
LIMK1-208ENST00000538333 WASLO00401 505 aaPredicted RBP18.23■□□□□ 0.51
LIMK1-208ENST00000538333 HDGFP51858 240 aaKnown RBP18.23■□□□□ 0.51
LIMK1-208ENST00000538333 CDC42BPGQ6DT37 1551 aa18.22■□□□□ 0.51
LIMK1-208ENST00000538333 CENPQQ7L2Z9 268 aaPredicted RBP18.21■□□□□ 0.51
LIMK1-208ENST00000538333 TXNDC2Q86VQ3 553 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms