RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 A2ML1A8K2U0 1454 aa8.78□□□□□ -1
USP28-206ENST00000538224 MED14O60244 1454 aa8.78□□□□□ -1
USP28-206ENST00000538224 RRP1P56182 461 aaKnown RBP8.78□□□□□ -1
USP28-206ENST00000538224 RCAN3Q9UKA8 241 aa8.78□□□□□ -1
USP28-206ENST00000538224 ERICH6Q7L0X2 663 aa8.77□□□□□ -1.01
USP28-206ENST00000538224 UBR1Q8IWV7 1749 aa8.77□□□□□ -1.01
USP28-206ENST00000538224 STAG3Q9UJ98 1225 aa8.76□□□□□ -1.01
USP28-206ENST00000538224 ADAMTS8Q9UP79 889 aa8.76□□□□□ -1.01
USP28-206ENST00000538224 RIMS2Q9UQ26 1411 aa8.76□□□□□ -1.01
USP28-206ENST00000538224 NRXN3Q9Y4C0 1643 aa8.76□□□□□ -1.01
USP28-206ENST00000538224 ITSN1Q15811 1721 aa8.75□□□□□ -1.01
USP28-206ENST00000538224 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.75□□□□□ -1.01
USP28-206ENST00000538224 CCDC136Q96JN2 1154 aa8.75□□□□□ -1.01
USP28-206ENST00000538224 CFAP53Q96M91 514 aa8.75□□□□□ -1.01
USP28-206ENST00000538224 ESF1Q9H501 851 aaKnown RBP8.75□□□□□ -1.01
USP28-206ENST00000538224 ATP7BP35670 1465 aa8.75□□□□□ -1.01
USP28-206ENST00000538224 CPS1P31327 1500 aa8.75□□□□□ -1.01
USP28-206ENST00000538224 ABCC11Q96J66 1382 aa8.74□□□□□ -1.01
USP28-206ENST00000538224 GOLGA2Q08379 1002 aa8.74□□□□□ -1.01
USP28-206ENST00000538224 NCBP3Q53F19 620 aaKnown RBP8.74□□□□□ -1.01
USP28-206ENST00000538224 TMEM132EQ6IEE7 984 aa8.74□□□□□ -1.01
USP28-206ENST00000538224 MORC1Q86VD1 984 aa8.74□□□□□ -1.01
USP28-206ENST00000538224 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.74□□□□□ -1.01
USP28-206ENST00000538224 CARD14Q9BXL6 1004 aa8.74□□□□□ -1.01
USP28-206ENST00000538224 ZNF521Q96K83 1311 aa8.74□□□□□ -1.01
USP28-206ENST00000538224 ADGRB2O60241 1585 aa8.73□□□□□ -1.01
USP28-206ENST00000538224 NKTRP30414 1462 aaKnown RBP8.73□□□□□ -1.01
USP28-206ENST00000538224 IQSEC2Q5JU85 1478 aa8.73□□□□□ -1.01
USP28-206ENST00000538224 NLRP1Q9C000 1473 aa8.73□□□□□ -1.01
USP28-206ENST00000538224 HDGFP51858 240 aaKnown RBP8.73□□□□□ -1.01
USP28-206ENST00000538224 TERF2IPQ9NYB0 399 aa8.73□□□□□ -1.01
USP28-206ENST00000538224 MON2Q7Z3U7 1717 aa8.73□□□□□ -1.01
USP28-206ENST00000538224 FER1L4A9Z1Z3 1794 aa8.73□□□□□ -1.01
USP28-206ENST00000538224 AKAP12Q02952 1782 aa8.72□□□□□ -1.01
USP28-206ENST00000538224 B4GALNT3Q6L9W6 998 aa8.72□□□□□ -1.01
USP28-206ENST00000538224 POGKQ9P215 609 aa8.72□□□□□ -1.01
USP28-206ENST00000538224 CDC42BPGQ6DT37 1551 aa8.72□□□□□ -1.01
USP28-206ENST00000538224 A0A1W2PP64 1363 aa8.72□□□□□ -1.01
USP28-206ENST00000538224 PLEKHH1Q9ULM0 1364 aa8.72□□□□□ -1.01
USP28-206ENST00000538224 TECPR2O15040 1411 aa8.71□□□□□ -1.01
USP28-206ENST00000538224 E9PSI1 815 aa8.71□□□□□ -1.02
USP28-206ENST00000538224 RBM19Q9Y4C8 960 aaKnown RBP8.71□□□□□ -1.02
USP28-206ENST00000538224 TNRQ92752 1358 aa8.71□□□□□ -1.02
USP28-206ENST00000538224 FAM135BQ49AJ0 1406 aa8.71□□□□□ -1.02
USP28-206ENST00000538224 DIP2AQ14689 1571 aa8.7□□□□□ -1.02
USP28-206ENST00000538224 C3P01024 1663 aa8.7□□□□□ -1.02
USP28-206ENST00000538224 SRPK2P78362 688 aaKnown RBP8.7□□□□□ -1.02
USP28-206ENST00000538224 HDGFL2Q7Z4V5 671 aaPredicted RBP8.7□□□□□ -1.02
USP28-206ENST00000538224 PHF23Q9BUL5 403 aaPredicted RBP8.7□□□□□ -1.02
USP28-206ENST00000538224 SLC12A5Q9H2X9 1139 aa8.7□□□□□ -1.02
USP28-206ENST00000538224 SALL2Q9Y467 1007 aaPredicted RBP8.7□□□□□ -1.02
USP28-206ENST00000538224 FANCIQ9NVI1 1328 aa8.7□□□□□ -1.02
USP28-206ENST00000538224 ZMYM3Q14202 1370 aa8.7□□□□□ -1.02
USP28-206ENST00000538224 RIMS1Q86UR5 1692 aaKnown RBP8.69□□□□□ -1.02
USP28-206ENST00000538224 SLFN5Q08AF3 891 aa8.69□□□□□ -1.02
USP28-206ENST00000538224 DUSP27Q5VZP5 1158 aa8.69□□□□□ -1.02
USP28-206ENST00000538224 FBXO31Q5XUX0 539 aaPredicted RBP8.69□□□□□ -1.02
USP28-206ENST00000538224 CDCA7LQ96GN5 454 aa8.69□□□□□ -1.02
USP28-206ENST00000538224 PRAM1Q96QH2 718 aa8.69□□□□□ -1.02
USP28-206ENST00000538224 CD163L1Q9NR16 1453 aa8.69□□□□□ -1.02
USP28-206ENST00000538224 TOPAZ1Q8N9V7 1692 aa8.69□□□□□ -1.02
USP28-206ENST00000538224 PRKCSHP14314 528 aaPredicted RBP8.68□□□□□ -1.02
USP28-206ENST00000538224 NUTM2DQ5VT03 806 aaPredicted RBP8.68□□□□□ -1.02
USP28-206ENST00000538224 TRMT2AQ8IZ69 625 aaKnown RBP8.68□□□□□ -1.02
USP28-206ENST00000538224 RUNDC1Q96C34 613 aa8.68□□□□□ -1.02
USP28-206ENST00000538224 SIRT1Q96EB6 747 aa8.68□□□□□ -1.02
USP28-206ENST00000538224 STK26Q9P289 416 aa8.68□□□□□ -1.02
USP28-206ENST00000538224 COL3A1P02461 1466 aaPredicted RBP8.68□□□□□ -1.02
USP28-206ENST00000538224 APAF1O14727 1248 aa8.67□□□□□ -1.02
USP28-206ENST00000538224 CCDC27Q2M243 656 aa8.67□□□□□ -1.02
USP28-206ENST00000538224 EDC4Q6P2E9 1401 aaKnown RBP8.67□□□□□ -1.02
USP28-206ENST00000538224 PNNQ9H307 717 aaKnown RBP8.67□□□□□ -1.02
USP28-206ENST00000538224 CABP2Q9NPB3 220 aa8.67□□□□□ -1.02
USP28-206ENST00000538224 SLIT1O75093 1534 aa8.66□□□□□ -1.02
USP28-206ENST00000538224 TMEM2Q9UHN6 1383 aa8.66□□□□□ -1.02
USP28-206ENST00000538224 MINK1Q8N4C8 1332 aaPredicted RBP8.66□□□□□ -1.02
USP28-206ENST00000538224 MAP2P11137 1827 aaKnown RBP8.66□□□□□ -1.02
USP28-206ENST00000538224 NRKQ7Z2Y5 1582 aa8.65□□□□□ -1.02
USP28-206ENST00000538224 PLEKHG1Q9ULL1 1385 aa8.65□□□□□ -1.02
USP28-206ENST00000538224 SENP3-EIF4A1A0A087X0R7 540 aa8.65□□□□□ -1.02
USP28-206ENST00000538224 TCERG1O14776 1098 aaKnown RBP8.65□□□□□ -1.02
USP28-206ENST00000538224 MTHFSP49914 203 aa8.65□□□□□ -1.02
USP28-206ENST00000538224 MLECQ14165 292 aa8.65□□□□□ -1.02
USP28-206ENST00000538224 WDR63Q8IWG1 891 aa8.65□□□□□ -1.02
USP28-206ENST00000538224 CCDC146Q8IYE0 955 aa8.65□□□□□ -1.02
USP28-206ENST00000538224 EXOC6Q8TAG9 804 aa8.65□□□□□ -1.02
USP28-206ENST00000538224 VIRMAQ69YN4 1812 aaKnown RBP8.64□□□□□ -1.03
USP28-206ENST00000538224 MS4A1P11836 297 aa8.64□□□□□ -1.03
USP28-206ENST00000538224 SAFB2Q14151 953 aaKnown RBP eCLIP8.64□□□□□ -1.03
USP28-206ENST00000538224 CDK19Q9BWU1 502 aa8.64□□□□□ -1.03
USP28-206ENST00000538224 CDK12Q9NYV4 1490 aaPredicted RBP8.64□□□□□ -1.03
USP28-206ENST00000538224 ARHGAP23Q9P227 1491 aa8.64□□□□□ -1.03
USP28-206ENST00000538224 PPIP5K1Q6PFW1 1433 aa8.63□□□□□ -1.03
USP28-206ENST00000538224 NALCNQ8IZF0 1738 aa8.63□□□□□ -1.03
USP28-206ENST00000538224 AAMPQ13685 434 aa8.63□□□□□ -1.03
USP28-206ENST00000538224 WWC1Q8IX03 1113 aa8.63□□□□□ -1.03
USP28-206ENST00000538224 CPSF1Q10570 1443 aaKnown RBP8.63□□□□□ -1.03
USP28-206ENST00000538224 ZNF142P52746 1687 aaPredicted RBP8.62□□□□□ -1.03
USP28-206ENST00000538224 PNPLA6Q8IY17 1366 aa8.62□□□□□ -1.03
USP28-206ENST00000538224 MAPK8IP3Q9UPT6 1336 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms