RNA–Protein interactions for RNA: ENST00000535493.5

HDAC4-214, Transcript of histone deacetylase 4, humanhuman

TSL 2

Gene HDAC4, Length 2,743 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-214ENST00000535493 RSPH6AQ9H0K4 717 aa17.03■□□□□ 0.32
HDAC4-214ENST00000535493 CLTCL1P53675 1640 aa17.02■□□□□ 0.32
HDAC4-214ENST00000535493 SCAPERQ9BY12 1400 aa17.02■□□□□ 0.32
HDAC4-214ENST00000535493 PLXNC1O60486 1568 aa17.02■□□□□ 0.31
HDAC4-214ENST00000535493 GOLGA6L3A6NEY3 463 aa17.02■□□□□ 0.31
HDAC4-214ENST00000535493 MVPQ14764 893 aaKnown RBP17.01■□□□□ 0.31
HDAC4-214ENST00000535493 ITPRIPQ8IWB1 547 aa17.01■□□□□ 0.31
HDAC4-214ENST00000535493 POLR3AO14802 1390 aaPredicted RBP17.01■□□□□ 0.31
HDAC4-214ENST00000535493 U2SURPO15042 1029 aaKnown RBP17■□□□□ 0.31
HDAC4-214ENST00000535493 L1TD1Q5T7N2 865 aaKnown RBP17■□□□□ 0.31
HDAC4-214ENST00000535493 SMC4Q9NTJ3 1288 aa17■□□□□ 0.31
HDAC4-214ENST00000535493 FOXD4L1Q9NU39 408 aa17■□□□□ 0.31
HDAC4-214ENST00000535493 PLCH2O75038 1416 aa17■□□□□ 0.31
HDAC4-214ENST00000535493 EXOSC9Q06265 439 aaKnown RBP16.99■□□□□ 0.31
HDAC4-214ENST00000535493 DZIP1LQ8IYY4 767 aaKnown RBP16.99■□□□□ 0.31
HDAC4-214ENST00000535493 UBE2Q2Q8WVN8 375 aa16.99■□□□□ 0.31
HDAC4-214ENST00000535493 KDM5AP29375 1690 aaKnown RBP16.99■□□□□ 0.31
HDAC4-214ENST00000535493 TRAK2O60296 914 aa16.98■□□□□ 0.31
HDAC4-214ENST00000535493 TRIM27P14373 513 aa16.98■□□□□ 0.31
HDAC4-214ENST00000535493 ZKSCAN2Q63HK3 967 aa16.98■□□□□ 0.31
HDAC4-214ENST00000535493 NAP1L5Q96NT1 182 aaPredicted RBP16.97■□□□□ 0.31
HDAC4-214ENST00000535493 TRPM2O94759 1503 aa16.97■□□□□ 0.31
HDAC4-214ENST00000535493 PTPRTO14522 1441 aa16.97■□□□□ 0.31
HDAC4-214ENST00000535493 WDR63Q8IWG1 891 aa16.97■□□□□ 0.31
HDAC4-214ENST00000535493 SSH1Q8WYL5 1049 aa16.97■□□□□ 0.31
HDAC4-214ENST00000535493 NGEFQ8N5V2 710 aa16.96■□□□□ 0.31
HDAC4-214ENST00000535493 PHF23Q9BUL5 403 aaPredicted RBP16.96■□□□□ 0.31
HDAC4-214ENST00000535493 CEP152O94986 1710 aa16.96■□□□□ 0.31
HDAC4-214ENST00000535493 SPHKAPQ2M3C7 1700 aa16.96■□□□□ 0.31
HDAC4-214ENST00000535493 VIRMAQ69YN4 1812 aaKnown RBP16.96■□□□□ 0.3
HDAC4-214ENST00000535493 NINLQ9Y2I6 1382 aa16.96■□□□□ 0.3
HDAC4-214ENST00000535493 LNPKQ9C0E8 428 aa16.95■□□□□ 0.3
HDAC4-214ENST00000535493 MYH16Q9H6N6 1097 aa16.95■□□□□ 0.3
HDAC4-214ENST00000535493 CABP2Q9NPB3 220 aa16.95■□□□□ 0.3
HDAC4-214ENST00000535493 NOB1Q9ULX3 412 aaKnown RBP16.95■□□□□ 0.3
HDAC4-214ENST00000535493 KANK1Q14678 1352 aa16.93■□□□□ 0.3
HDAC4-214ENST00000535493 CFAP53Q96M91 514 aa16.93■□□□□ 0.3
HDAC4-214ENST00000535493 CHMP5Q9NZZ3 219 aa16.93■□□□□ 0.3
HDAC4-214ENST00000535493 FSD2A1L4K1 749 aa16.93■□□□□ 0.3
HDAC4-214ENST00000535493 TMEM57Q8N5G2 664 aa16.93■□□□□ 0.3
HDAC4-214ENST00000535493 NOS1P29475 1434 aa16.93■□□□□ 0.3
HDAC4-214ENST00000535493 STAC3Q96MF2 364 aa16.92■□□□□ 0.3
HDAC4-214ENST00000535493 GGNBP2Q9H3C7 697 aa16.92■□□□□ 0.3
HDAC4-214ENST00000535493 HSCBQ8IWL3 235 aa16.91■□□□□ 0.3
HDAC4-214ENST00000535493 CFAP65Q6ZU64 1925 aaKnown RBP16.91■□□□□ 0.3
HDAC4-214ENST00000535493 FBLN1P23142 703 aa16.9■□□□□ 0.3
HDAC4-214ENST00000535493 GGT6Q6P531 493 aa16.9■□□□□ 0.3
HDAC4-214ENST00000535493 PNNQ9H307 717 aaKnown RBP16.9■□□□□ 0.3
HDAC4-214ENST00000535493 C1orf115Q9H7X2 142 aa16.9■□□□□ 0.3
HDAC4-214ENST00000535493 ABCC1P33527 1531 aa16.9■□□□□ 0.3
HDAC4-214ENST00000535493 ABCA6Q8N139 1617 aa16.9■□□□□ 0.3
HDAC4-214ENST00000535493 RTEL1-TNFRSF6BF6WH68 1400 aa16.89■□□□□ 0.29
HDAC4-214ENST00000535493 STK26Q9P289 416 aa16.89■□□□□ 0.29
HDAC4-214ENST00000535493 ATF7IPQ6VMQ6 1270 aa16.89■□□□□ 0.29
HDAC4-214ENST00000535493 RBM42Q9BTD8 480 aaKnown RBP16.89■□□□□ 0.29
HDAC4-214ENST00000535493 SHPRHQ149N8 1683 aa16.88■□□□□ 0.29
HDAC4-214ENST00000535493 IQSEC2Q5JU85 1478 aa16.88■□□□□ 0.29
HDAC4-214ENST00000535493 CD2BP2O95400 341 aaKnown RBP16.88■□□□□ 0.29
HDAC4-214ENST00000535493 TRIM35Q9UPQ4 493 aa16.88■□□□□ 0.29
HDAC4-214ENST00000535493 GAS2L3Q86XJ1 694 aa16.88■□□□□ 0.29
HDAC4-214ENST00000535493 ZNF692Q9BU19 519 aaPredicted RBP16.88■□□□□ 0.29
HDAC4-214ENST00000535493 TMPOP42166 694 aaKnown RBP16.87■□□□□ 0.29
HDAC4-214ENST00000535493 ERBB4Q15303 1308 aa16.87■□□□□ 0.29
HDAC4-214ENST00000535493 TNPO1Q92973 898 aaKnown RBP16.87■□□□□ 0.29
HDAC4-214ENST00000535493 GRPEL1Q9HAV7 217 aa16.87■□□□□ 0.29
HDAC4-214ENST00000535493 ELL2O00472 640 aaPredicted RBP16.86■□□□□ 0.29
HDAC4-214ENST00000535493 SLC24A1O60721 1099 aa16.86■□□□□ 0.29
HDAC4-214ENST00000535493 CCDC27Q2M243 656 aa16.86■□□□□ 0.29
HDAC4-214ENST00000535493 ZNF518AQ6AHZ1 1483 aa16.86■□□□□ 0.29
HDAC4-214ENST00000535493 RIPK4P57078 832 aa16.86■□□□□ 0.29
HDAC4-214ENST00000535493 MAP3K4Q9Y6R4 1608 aa16.85■□□□□ 0.29
HDAC4-214ENST00000535493 AAMPQ13685 434 aa16.85■□□□□ 0.29
HDAC4-214ENST00000535493 DDX19BQ9UMR2 479 aa16.85■□□□□ 0.29
HDAC4-214ENST00000535493 ZFYVE16Q7Z3T8 1539 aa16.85■□□□□ 0.29
HDAC4-214ENST00000535493 HSP90AA1P07900 732 aaKnown RBP16.84■□□□□ 0.29
HDAC4-214ENST00000535493 HSP90AB1P08238 724 aaKnown RBP16.84■□□□□ 0.29
HDAC4-214ENST00000535493 HDAC1Q13547 482 aaPredicted RBP16.84■□□□□ 0.29
HDAC4-214ENST00000535493 ZBTB40Q9NUA8 1239 aa16.84■□□□□ 0.29
HDAC4-214ENST00000535493 THUMPD2Q9BTF0 503 aaKnown RBP16.83■□□□□ 0.29
HDAC4-214ENST00000535493 C14orf93Q9H972 538 aaKnown RBP16.83■□□□□ 0.29
HDAC4-214ENST00000535493 CD109Q6YHK3 1445 aa16.83■□□□□ 0.29
HDAC4-214ENST00000535493 MRE11P49959 708 aa16.83■□□□□ 0.28
HDAC4-214ENST00000535493 ANKRD45Q5TZF3 282 aa16.83■□□□□ 0.28
HDAC4-214ENST00000535493 SMC5Q8IY18 1101 aa16.83■□□□□ 0.28
HDAC4-214ENST00000535493 SRPK2P78362 688 aaKnown RBP16.83■□□□□ 0.28
HDAC4-214ENST00000535493 PLEKHF1Q96S99 279 aa16.83■□□□□ 0.28
HDAC4-214ENST00000535493 CLCN1P35523 988 aa16.82■□□□□ 0.28
HDAC4-214ENST00000535493 CHD1O14646 1710 aa16.8■□□□□ 0.28
HDAC4-214ENST00000535493 CHD1LQ86WJ1 897 aa16.8■□□□□ 0.28
HDAC4-214ENST00000535493 NUCB1Q02818 461 aa16.8■□□□□ 0.28
HDAC4-214ENST00000535493 TET3O43151 1660 aa16.79■□□□□ 0.28
HDAC4-214ENST00000535493 ZCCHC11Q5TAX3 1644 aaKnown RBP16.79■□□□□ 0.28
HDAC4-214ENST00000535493 DDX11L8A8MPP1 907 aa16.79■□□□□ 0.28
HDAC4-214ENST00000535493 ESPNB1AK53 854 aa16.79■□□□□ 0.28
HDAC4-214ENST00000535493 KIF2CQ99661 725 aa16.79■□□□□ 0.28
HDAC4-214ENST00000535493 MYOM2P54296 1465 aa16.78■□□□□ 0.28
HDAC4-214ENST00000535493 MROH2AA6NES4 1674 aa16.78■□□□□ 0.28
HDAC4-214ENST00000535493 SBNO2Q9Y2G9 1366 aa16.78■□□□□ 0.28
HDAC4-214ENST00000535493 EVC2Q86UK5 1308 aa16.78■□□□□ 0.28
HDAC4-214ENST00000535493 FANCAO15360 1455 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms