RNA–Protein interactions for RNA: ENST00000535452.5

CLSTN3-205, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-205ENST00000535452 SETD1AO15047 1707 aaKnown RBP19.45■□□□□ 0.7
CLSTN3-205ENST00000535452 DHX57Q6P158 1386 aaKnown RBP19.44■□□□□ 0.7
CLSTN3-205ENST00000535452 RBM6P78332 1123 aaKnown RBP19.44■□□□□ 0.7
CLSTN3-205ENST00000535452 QTRT2Q9H974 415 aaKnown RBP19.44■□□□□ 0.7
CLSTN3-205ENST00000535452 SOS2Q07890 1332 aaPredicted RBP19.44■□□□□ 0.7
CLSTN3-205ENST00000535452 SPATA31E1Q6ZUB1 1445 aa19.43■□□□□ 0.7
CLSTN3-205ENST00000535452 HAP1P54257 671 aaPredicted RBP19.43■□□□□ 0.7
CLSTN3-205ENST00000535452 CDC42BPGQ6DT37 1551 aa19.43■□□□□ 0.7
CLSTN3-205ENST00000535452 ABCC11Q96J66 1382 aa19.43■□□□□ 0.7
CLSTN3-205ENST00000535452 NUTM2FA1L443 756 aa19.42■□□□□ 0.7
CLSTN3-205ENST00000535452 TMEM132EQ6IEE7 984 aa19.42■□□□□ 0.7
CLSTN3-205ENST00000535452 CDK12Q9NYV4 1490 aaPredicted RBP19.41■□□□□ 0.7
CLSTN3-205ENST00000535452 WAPLQ7Z5K2 1190 aa19.41■□□□□ 0.7
CLSTN3-205ENST00000535452 POGKQ9P215 609 aa19.41■□□□□ 0.7
CLSTN3-205ENST00000535452 USP21Q9UK80 565 aa19.41■□□□□ 0.7
CLSTN3-205ENST00000535452 FOXO3O43524 673 aa19.4■□□□□ 0.7
CLSTN3-205ENST00000535452 TRPC5Q9UL62 973 aaPredicted RBP19.4■□□□□ 0.7
CLSTN3-205ENST00000535452 TECPR2O15040 1411 aa19.4■□□□□ 0.7
CLSTN3-205ENST00000535452 PIK3C2GO75747 1445 aa19.4■□□□□ 0.7
CLSTN3-205ENST00000535452 PSME1Q06323 249 aa19.39■□□□□ 0.69
CLSTN3-205ENST00000535452 RAB3GAP2Q9H2M9 1393 aa19.39■□□□□ 0.69
CLSTN3-205ENST00000535452 YTHDC2Q9H6S0 1430 aaKnown RBP19.39■□□□□ 0.69
CLSTN3-205ENST00000535452 SIRT1Q96EB6 747 aa19.38■□□□□ 0.69
CLSTN3-205ENST00000535452 C14orf93Q9H972 538 aaKnown RBP19.37■□□□□ 0.69
CLSTN3-205ENST00000535452 LAMC1P11047 1609 aa19.36■□□□□ 0.69
CLSTN3-205ENST00000535452 XPCQ01831 940 aaPredicted RBP19.35■□□□□ 0.69
CLSTN3-205ENST00000535452 UPF1Q92900 1129 aaKnown RBP eCLIP19.35■□□□□ 0.69
CLSTN3-205ENST00000535452 STAC3Q96MF2 364 aa19.35■□□□□ 0.69
CLSTN3-205ENST00000535452 MYOM2P54296 1465 aa19.35■□□□□ 0.69
CLSTN3-205ENST00000535452 IFT172Q9UG01 1749 aa19.34■□□□□ 0.69
CLSTN3-205ENST00000535452 KNDC1Q76NI1 1749 aa19.34■□□□□ 0.69
CLSTN3-205ENST00000535452 CFAP70Q5T0N1 1121 aa19.33■□□□□ 0.68
CLSTN3-205ENST00000535452 EIF3AQ14152 1382 aaKnown RBP19.32■□□□□ 0.68
CLSTN3-205ENST00000535452 SAFB2Q14151 953 aaKnown RBP eCLIP19.32■□□□□ 0.68
CLSTN3-205ENST00000535452 LMOD2Q6P5Q4 547 aa19.32■□□□□ 0.68
CLSTN3-205ENST00000535452 PRAM1Q96QH2 718 aa19.32■□□□□ 0.68
CLSTN3-205ENST00000535452 KIF1AQ12756 1690 aa19.31■□□□□ 0.68
CLSTN3-205ENST00000535452 KRT28Q7Z3Y7 464 aa19.31■□□□□ 0.68
CLSTN3-205ENST00000535452 PHF8Q9UPP1 1060 aa19.31■□□□□ 0.68
CLSTN3-205ENST00000535452 KDM2AQ9Y2K7 1162 aa19.31■□□□□ 0.68
CLSTN3-205ENST00000535452 ATAD2Q6PL18 1390 aa19.31■□□□□ 0.68
CLSTN3-205ENST00000535452 PLEKHH1Q9ULM0 1364 aa19.31■□□□□ 0.68
CLSTN3-205ENST00000535452 FNBP4Q8N3X1 1017 aaPredicted RBP19.3■□□□□ 0.68
CLSTN3-205ENST00000535452 DCAF11Q8TEB1 546 aa19.3■□□□□ 0.68
CLSTN3-205ENST00000535452 COL22A1Q8NFW1 1626 aaPredicted RBP19.28■□□□□ 0.68
CLSTN3-205ENST00000535452 PXDNQ92626 1479 aa19.28■□□□□ 0.68
CLSTN3-205ENST00000535452 RGS12O14924 1447 aa19.27■□□□□ 0.68
CLSTN3-205ENST00000535452 HRCP23327 699 aa19.27■□□□□ 0.68
CLSTN3-205ENST00000535452 SPATA31A3Q5VYP0 1347 aa19.26■□□□□ 0.67
CLSTN3-205ENST00000535452 TRAK1Q9UPV9 953 aa19.26■□□□□ 0.67
CLSTN3-205ENST00000535452 FMN2Q9NZ56 1722 aa19.25■□□□□ 0.67
CLSTN3-205ENST00000535452 NRXN1Q9ULB1 1477 aa19.25■□□□□ 0.67
CLSTN3-205ENST00000535452 ARHGEF10O15013 1369 aa19.25■□□□□ 0.67
CLSTN3-205ENST00000535452 GPRASP1Q5JY77 1395 aa19.25■□□□□ 0.67
CLSTN3-205ENST00000535452 PLEKHG5O94827 1062 aa19.25■□□□□ 0.67
CLSTN3-205ENST00000535452 CCDC9Q9Y3X0 531 aaKnown RBP19.24■□□□□ 0.67
CLSTN3-205ENST00000535452 DLC1Q96QB1 1528 aa19.23■□□□□ 0.67
CLSTN3-205ENST00000535452 TNS3Q68CZ2 1445 aa19.23■□□□□ 0.67
CLSTN3-205ENST00000535452 UNC5CLQ8IV45 518 aa19.22■□□□□ 0.67
CLSTN3-205ENST00000535452 GJD4Q96KN9 370 aaPredicted RBP19.22■□□□□ 0.67
CLSTN3-205ENST00000535452 ANKARQ7Z5J8 1434 aa19.22■□□□□ 0.67
CLSTN3-205ENST00000535452 ATRNO75882 1429 aa19.21■□□□□ 0.67
CLSTN3-205ENST00000535452 MINK1Q8N4C8 1332 aaPredicted RBP19.21■□□□□ 0.67
CLSTN3-205ENST00000535452 SBNO1A3KN83 1393 aa19.2■□□□□ 0.66
CLSTN3-205ENST00000535452 CCDC125Q86Z20 511 aa19.2■□□□□ 0.66
CLSTN3-205ENST00000535452 NGDNQ8NEJ9 315 aaKnown RBP19.2■□□□□ 0.66
CLSTN3-205ENST00000535452 PMFBP1Q8TBY8 1022 aa19.2■□□□□ 0.66
CLSTN3-205ENST00000535452 HIRIP3Q9BW71 556 aaPredicted RBP19.2■□□□□ 0.66
CLSTN3-205ENST00000535452 A0A0G2JS52 829 aa19.19■□□□□ 0.66
CLSTN3-205ENST00000535452 MYT1Q01538 1121 aa19.19■□□□□ 0.66
CLSTN3-205ENST00000535452 SF3B2Q13435 895 aaKnown RBP19.19■□□□□ 0.66
CLSTN3-205ENST00000535452 PAK3O75914 559 aaPredicted RBP19.17■□□□□ 0.66
CLSTN3-205ENST00000535452 WASLO00401 505 aaPredicted RBP19.16■□□□□ 0.66
CLSTN3-205ENST00000535452 MARF1Q9Y4F3 1742 aaKnown RBP19.16■□□□□ 0.66
CLSTN3-205ENST00000535452 BCL9LQ86UU0 1499 aa19.15■□□□□ 0.66
CLSTN3-205ENST00000535452 ZRANB1Q9UGI0 708 aa19.14■□□□□ 0.65
CLSTN3-205ENST00000535452 CABLES1Q8TDN4 633 aa19.13■□□□□ 0.65
CLSTN3-205ENST00000535452 ADGRB2O60241 1585 aa19.13■□□□□ 0.65
CLSTN3-205ENST00000535452 USP32Q8NFA0 1604 aa19.13■□□□□ 0.65
CLSTN3-205ENST00000535452 ADGRB1O14514 1584 aa19.11■□□□□ 0.65
CLSTN3-205ENST00000535452 TULP4Q9NRJ4 1543 aa19.11■□□□□ 0.65
CLSTN3-205ENST00000535452 VPS72Q15906 364 aa19.11■□□□□ 0.65
CLSTN3-205ENST00000535452 SLIT2O94813 1529 aa19.1■□□□□ 0.65
CLSTN3-205ENST00000535452 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.1■□□□□ 0.65
CLSTN3-205ENST00000535452 RALGAPBQ86X10 1494 aa19.09■□□□□ 0.65
CLSTN3-205ENST00000535452 RGPD8O14715 1765 aaPredicted RBP19.09■□□□□ 0.65
CLSTN3-205ENST00000535452 SEPT12Q8IYM1 358 aa19.07■□□□□ 0.64
CLSTN3-205ENST00000535452 NUDT16Q96DE0 195 aaKnown RBP19.06■□□□□ 0.64
CLSTN3-205ENST00000535452 PRDM11Q9NQV5 511 aa19.06■□□□□ 0.64
CLSTN3-205ENST00000535452 BTG4Q9NY30 223 aa19.06■□□□□ 0.64
CLSTN3-205ENST00000535452 SRPK2P78362 688 aaKnown RBP19.05■□□□□ 0.64
CLSTN3-205ENST00000535452 BLMP54132 1417 aaPredicted RBP19.04■□□□□ 0.64
CLSTN3-205ENST00000535452 ITSN1Q15811 1721 aa19.04■□□□□ 0.64
CLSTN3-205ENST00000535452 KRT27Q7Z3Y8 459 aa19.04■□□□□ 0.64
CLSTN3-205ENST00000535452 CDK19Q9BWU1 502 aa19.04■□□□□ 0.64
CLSTN3-205ENST00000535452 CCDC61Q9Y6R9 512 aa19.04■□□□□ 0.64
CLSTN3-205ENST00000535452 NWD2Q9ULI1 1742 aa19.03■□□□□ 0.64
CLSTN3-205ENST00000535452 FAM83GA6ND36 823 aa19.03■□□□□ 0.64
CLSTN3-205ENST00000535452 PRR36Q9H6K5 1346 aa19.01■□□□□ 0.63
CLSTN3-205ENST00000535452 PLCH1Q4KWH8 1693 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms