RNA–Protein interactions for RNA: ENST00000535181.5

CHFR-209, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 2

Gene CHFR, Length 753 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-209	ENST00000535181	TRAK1	Q9UPV9	953 aa		29.37	■■■□□ 2.29
CHFR-209	ENST00000535181	CDC42BPG	Q6DT37	1551 aa		29.37	■■■□□ 2.29
CHFR-209	ENST00000535181	ROCK2	O75116	1388 aa	Known RBP	29.37	■■■□□ 2.29
CHFR-209	ENST00000535181	PRAM1	Q96QH2	718 aa		29.35	■■■□□ 2.29
CHFR-209	ENST00000535181	ATF3	P18847	181 aa		29.34	■■■□□ 2.29
CHFR-209	ENST00000535181	ADGRB2	O60241	1585 aa		29.31	■■■□□ 2.28
CHFR-209	ENST00000535181	POGK	Q9P215	609 aa		29.31	■■■□□ 2.28
CHFR-209	ENST00000535181	SLAIN2	Q9P270	581 aa		29.29	■■■□□ 2.28
CHFR-209	ENST00000535181	MST1R	Q04912	1400 aa		29.28	■■■□□ 2.28
CHFR-209	ENST00000535181	ILDR1	Q86SU0	546 aa	Predicted RBP	29.25	■■■□□ 2.27
CHFR-209	ENST00000535181	PIP4K2B	P78356	416 aa		29.24	■■■□□ 2.27
CHFR-209	ENST00000535181	EIF3A	Q14152	1382 aa	Known RBP	29.24	■■■□□ 2.27
CHFR-209	ENST00000535181	FMN2	Q9NZ56	1722 aa		29.23	■■■□□ 2.27
CHFR-209	ENST00000535181	CARD11	Q9BXL7	1154 aa		29.23	■■■□□ 2.27
CHFR-209	ENST00000535181	ROBO1	Q9Y6N7	1651 aa		29.23	■■■□□ 2.27
CHFR-209	ENST00000535181	SAFB2	Q14151	953 aa	Known RBP eCLIP	29.22	■■■□□ 2.27
CHFR-209	ENST00000535181	C1orf167	Q5SNV9	1468 aa		29.21	■■■□□ 2.27
CHFR-209	ENST00000535181	CENPJ	Q9HC77	1338 aa	Predicted RBP	29.2	■■■□□ 2.27
CHFR-209	ENST00000535181	SCAF1	Q9H7N4	1312 aa	Known RBP	29.2	■■■□□ 2.26
CHFR-209	ENST00000535181	QRICH2	Q9H0J4	1663 aa		29.19	■■■□□ 2.26
CHFR-209	ENST00000535181	MINK1	Q8N4C8	1332 aa	Predicted RBP	29.17	■■■□□ 2.26
CHFR-209	ENST00000535181	ANKAR	Q7Z5J8	1434 aa		29.14	■■■□□ 2.26
CHFR-209	ENST00000535181	SBNO2	Q9Y2G9	1366 aa		29.13	■■■□□ 2.25
CHFR-209	ENST00000535181	BRINP3	Q76B58	766 aa		29.13	■■■□□ 2.25
CHFR-209	ENST00000535181	TULP4	Q9NRJ4	1543 aa		29.12	■■■□□ 2.25
CHFR-209	ENST00000535181	WASL	O00401	505 aa	Predicted RBP	29.12	■■■□□ 2.25
CHFR-209	ENST00000535181	HIRIP3	Q9BW71	556 aa	Predicted RBP	29.12	■■■□□ 2.25
CHFR-209	ENST00000535181	AHDC1	Q5TGY3	1603 aa	Predicted RBP	29.11	■■■□□ 2.25
CHFR-209	ENST00000535181	USP32	Q8NFA0	1604 aa		29.09	■■■□□ 2.25
CHFR-209	ENST00000535181	NHSL1	Q5SYE7	1610 aa		29.09	■■■□□ 2.25
CHFR-209	ENST00000535181	KIF1A	Q12756	1690 aa		29.06	■■■□□ 2.24
CHFR-209	ENST00000535181	HSPA1L	P34931	641 aa		29.06	■■■□□ 2.24
CHFR-209	ENST00000535181	USP47	Q96K76	1375 aa		29.05	■■■□□ 2.24
CHFR-209	ENST00000535181	ORAI2	Q96SN7	254 aa		29.05	■■■□□ 2.24
CHFR-209	ENST00000535181	RGPD8	O14715	1765 aa	Predicted RBP	29.05	■■■□□ 2.24
CHFR-209	ENST00000535181	ATP7B	P35670	1465 aa		29.04	■■■□□ 2.24
CHFR-209	ENST00000535181	PHLPP1	O60346	1717 aa		29.03	■■■□□ 2.24
CHFR-209	ENST00000535181	NUTM2F	A1L443	756 aa		29.03	■■■□□ 2.24
CHFR-209	ENST00000535181	ESCO1	Q5FWF5	840 aa		29.03	■■■□□ 2.24
CHFR-209	ENST00000535181	CDK19	Q9BWU1	502 aa		29.03	■■■□□ 2.24
CHFR-209	ENST00000535181	ITSN1	Q15811	1721 aa		29.02	■■■□□ 2.24
CHFR-209	ENST00000535181	COL16A1	Q07092	1604 aa	Predicted RBP	29.02	■■■□□ 2.24
CHFR-209	ENST00000535181	PRR36	Q9H6K5	1346 aa		29.01	■■■□□ 2.23
CHFR-209	ENST00000535181	EVC2	Q86UK5	1308 aa		29	■■■□□ 2.23
CHFR-209	ENST00000535181	TOPAZ1	Q8N9V7	1692 aa		28.99	■■■□□ 2.23
CHFR-209	ENST00000535181	SLC24A1	O60721	1099 aa		28.99	■■■□□ 2.23
CHFR-209	ENST00000535181	ST20-MTHFS	A0A0A6YYL1	179 aa		28.98	■■■□□ 2.23
CHFR-209	ENST00000535181	NUDT16	Q96DE0	195 aa	Known RBP	28.97	■■■□□ 2.23
CHFR-209	ENST00000535181	TESK2	Q96S53	571 aa		28.96	■■■□□ 2.23
CHFR-209	ENST00000535181	PHF8	Q9UPP1	1060 aa		28.96	■■■□□ 2.23
CHFR-209	ENST00000535181	NPHP3	Q7Z494	1330 aa		28.95	■■■□□ 2.23
CHFR-209	ENST00000535181	SRPK2	P78362	688 aa	Known RBP	28.94	■■■□□ 2.22
CHFR-209	ENST00000535181	SOS2	Q07890	1332 aa	Predicted RBP	28.94	■■■□□ 2.22
CHFR-209	ENST00000535181	CCDC61	Q9Y6R9	512 aa		28.93	■■■□□ 2.22
CHFR-209	ENST00000535181	PXDN	Q92626	1479 aa		28.92	■■■□□ 2.22
CHFR-209	ENST00000535181	PUS7	Q96PZ0	661 aa	Known RBP	28.9	■■■□□ 2.22
CHFR-209	ENST00000535181	CABP2	Q9NPB3	220 aa		28.9	■■■□□ 2.22
CHFR-209	ENST00000535181	ATAD2	Q6PL18	1390 aa		28.89	■■■□□ 2.22
CHFR-209	ENST00000535181	FOXO3	O43524	673 aa		28.89	■■■□□ 2.22
CHFR-209	ENST00000535181	DDX17	Q92841	729 aa	Known RBP	28.89	■■■□□ 2.22
CHFR-209	ENST00000535181	EIF4G2	P78344	907 aa	Known RBP eCLIP	28.88	■■■□□ 2.21
CHFR-209	ENST00000535181	PLEKHG3	A1L390	1219 aa		28.87	■■■□□ 2.21
CHFR-209	ENST00000535181	POLR3A	O14802	1390 aa	Predicted RBP	28.87	■■■□□ 2.21
CHFR-209	ENST00000535181	JCAD	Q9P266	1359 aa		28.87	■■■□□ 2.21
CHFR-209	ENST00000535181	SHPRH	Q149N8	1683 aa		28.86	■■■□□ 2.21
CHFR-209	ENST00000535181	PMFBP1	Q8TBY8	1022 aa		28.86	■■■□□ 2.21
CHFR-209	ENST00000535181	LRRC59	Q96AG4	307 aa	Known RBP	28.86	■■■□□ 2.21
CHFR-209	ENST00000535181	PPIP5K1	Q6PFW1	1433 aa		28.86	■■■□□ 2.21
CHFR-209	ENST00000535181	TMF1	P82094	1093 aa		28.82	■■■□□ 2.2
CHFR-209	ENST00000535181	SBNO1	A3KN83	1393 aa		28.81	■■■□□ 2.2
CHFR-209	ENST00000535181	KRT28	Q7Z3Y7	464 aa		28.81	■■■□□ 2.2
CHFR-209	ENST00000535181	NGDN	Q8NEJ9	315 aa	Known RBP	28.81	■■■□□ 2.2
CHFR-209	ENST00000535181	DISP3	Q9P2K9	1392 aa		28.8	■■■□□ 2.2
CHFR-209	ENST00000535181	HSPA5	P11021	654 aa	Known RBP	28.8	■■■□□ 2.2
CHFR-209	ENST00000535181	PSME1	Q06323	249 aa		28.8	■■■□□ 2.2
CHFR-209	ENST00000535181	TRPM3	Q9HCF6	1732 aa	Predicted RBP	28.8	■■■□□ 2.2
CHFR-209	ENST00000535181	ACE	P12821	1306 aa		28.79	■■■□□ 2.2
CHFR-209	ENST00000535181	CDCA8	Q53HL2	280 aa		28.78	■■■□□ 2.2
CHFR-209	ENST00000535181	PNPLA6	Q8IY17	1366 aa		28.77	■■■□□ 2.2
CHFR-209	ENST00000535181	COL22A1	Q8NFW1	1626 aa	Predicted RBP	28.77	■■■□□ 2.2
CHFR-209	ENST00000535181	XPC	Q01831	940 aa	Predicted RBP	28.77	■■■□□ 2.2
CHFR-209	ENST00000535181	CABP1	Q9NZU7	370 aa		28.77	■■■□□ 2.2
CHFR-209	ENST00000535181	TNS3	Q68CZ2	1445 aa		28.77	■■■□□ 2.2
CHFR-209	ENST00000535181	NINL	Q9Y2I6	1382 aa		28.76	■■■□□ 2.2
CHFR-209	ENST00000535181	SPATA31A3	Q5VYP0	1347 aa		28.76	■■■□□ 2.19
CHFR-209	ENST00000535181	BRD4	O60885	1362 aa	Predicted RBP	28.75	■■■□□ 2.19
CHFR-209	ENST00000535181	SPATA31A6	Q5VVP1	1343 aa		28.75	■■■□□ 2.19
CHFR-209	ENST00000535181	AKAP12	Q02952	1782 aa		28.73	■■■□□ 2.19
CHFR-209	ENST00000535181	ALS2	Q96Q42	1657 aa		28.73	■■■□□ 2.19
CHFR-209	ENST00000535181	CPSF1	Q10570	1443 aa	Known RBP	28.72	■■■□□ 2.19
CHFR-209	ENST00000535181	ARHGEF10	O15013	1369 aa		28.71	■■■□□ 2.19
CHFR-209	ENST00000535181	USP6	P35125	1406 aa		28.7	■■■□□ 2.19
CHFR-209	ENST00000535181	ZNF692	Q9BU19	519 aa	Predicted RBP	28.7	■■■□□ 2.18
CHFR-209	ENST00000535181	ZEB1	P37275	1124 aa	Predicted RBP	28.69	■■■□□ 2.18
CHFR-209	ENST00000535181	CD163L1	Q9NR16	1453 aa		28.69	■■■□□ 2.18
CHFR-209	ENST00000535181	MED1	Q15648	1581 aa	Predicted RBP	28.68	■■■□□ 2.18
CHFR-209	ENST00000535181	MON2	Q7Z3U7	1717 aa		28.68	■■■□□ 2.18
CHFR-209	ENST00000535181	SSH2	Q76I76	1423 aa		28.67	■■■□□ 2.18
CHFR-209	ENST00000535181	TMC1	Q8TDI8	760 aa		28.65	■■■□□ 2.18
CHFR-209	ENST00000535181	SLC12A5	Q9H2X9	1139 aa		28.65	■■■□□ 2.18

Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms