RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 RAB3GAP2Q9H2M9 1393 aa26.32■■□□□ 1.8
PCF11-206ENST00000533018 RXRBP28702 533 aa26.31■■□□□ 1.8
PCF11-206ENST00000533018 LRPPRCP42704 1394 aaKnown RBP26.3■■□□□ 1.8
PCF11-206ENST00000533018 PIK3C2GO75747 1445 aa26.3■■□□□ 1.8
PCF11-206ENST00000533018 NUTM2FA1L443 756 aa26.29■■□□□ 1.8
PCF11-206ENST00000533018 ADAMTS2O95450 1211 aa26.28■■□□□ 1.8
PCF11-206ENST00000533018 SOS2Q07890 1332 aaPredicted RBP26.28■■□□□ 1.8
PCF11-206ENST00000533018 CDC42BPGQ6DT37 1551 aa26.28■■□□□ 1.8
PCF11-206ENST00000533018 LAMC1P11047 1609 aa26.27■■□□□ 1.8
PCF11-206ENST00000533018 TECPR2O15040 1411 aa26.26■■□□□ 1.79
PCF11-206ENST00000533018 ABCC11Q96J66 1382 aa26.26■■□□□ 1.79
PCF11-206ENST00000533018 KNDC1Q76NI1 1749 aa26.25■■□□□ 1.79
PCF11-206ENST00000533018 YTHDC2Q9H6S0 1430 aaKnown RBP26.24■■□□□ 1.79
PCF11-206ENST00000533018 PLEKHH1Q9ULM0 1364 aa26.24■■□□□ 1.79
PCF11-206ENST00000533018 NGLY1Q96IV0 654 aa26.24■■□□□ 1.79
PCF11-206ENST00000533018 NPHP3Q7Z494 1330 aa26.23■■□□□ 1.79
PCF11-206ENST00000533018 C14orf93Q9H972 538 aaKnown RBP26.23■■□□□ 1.79
PCF11-206ENST00000533018 FOXO3O43524 673 aa26.22■■□□□ 1.79
PCF11-206ENST00000533018 XPCQ01831 940 aaPredicted RBP26.22■■□□□ 1.79
PCF11-206ENST00000533018 CFAP70Q5T0N1 1121 aa26.22■■□□□ 1.79
PCF11-206ENST00000533018 QTRT2Q9H974 415 aaKnown RBP26.21■■□□□ 1.79
PCF11-206ENST00000533018 DHX57Q6P158 1386 aaKnown RBP26.2■■□□□ 1.79
PCF11-206ENST00000533018 MYOM2P54296 1465 aa26.18■■□□□ 1.78
PCF11-206ENST00000533018 SAFB2Q14151 953 aaKnown RBP eCLIP26.16■■□□□ 1.78
PCF11-206ENST00000533018 NRXN1Q9ULB1 1477 aa26.16■■□□□ 1.78
PCF11-206ENST00000533018 RBM6P78332 1123 aaKnown RBP26.15■■□□□ 1.78
PCF11-206ENST00000533018 SIRT1Q96EB6 747 aa26.15■■□□□ 1.78
PCF11-206ENST00000533018 KDM2AQ9Y2K7 1162 aa26.15■■□□□ 1.78
PCF11-206ENST00000533018 FMN2Q9NZ56 1722 aa26.14■■□□□ 1.78
PCF11-206ENST00000533018 PXDNQ92626 1479 aa26.14■■□□□ 1.78
PCF11-206ENST00000533018 CDK12Q9NYV4 1490 aaPredicted RBP26.13■■□□□ 1.77
PCF11-206ENST00000533018 PRAM1Q96QH2 718 aa26.13■■□□□ 1.77
PCF11-206ENST00000533018 POGKQ9P215 609 aa26.13■■□□□ 1.77
PCF11-206ENST00000533018 USP21Q9UK80 565 aa26.13■■□□□ 1.77
PCF11-206ENST00000533018 COL22A1Q8NFW1 1626 aaPredicted RBP26.13■■□□□ 1.77
PCF11-206ENST00000533018 DCAF11Q8TEB1 546 aa26.12■■□□□ 1.77
PCF11-206ENST00000533018 UPF1Q92900 1129 aaKnown RBP eCLIP26.12■■□□□ 1.774e-10■□□□□ 9.9
PCF11-206ENST00000533018 RGPD8O14715 1765 aaPredicted RBP26.1■■□□□ 1.77
PCF11-206ENST00000533018 KIF1AQ12756 1690 aa26.09■■□□□ 1.77
PCF11-206ENST00000533018 KRT28Q7Z3Y7 464 aa26.07■■□□□ 1.76
PCF11-206ENST00000533018 TRPC5Q9UL62 973 aaPredicted RBP26.07■■□□□ 1.76
PCF11-206ENST00000533018 TRAK1Q9UPV9 953 aa26.07■■□□□ 1.76
PCF11-206ENST00000533018 HRCP23327 699 aa26.06■■□□□ 1.76
PCF11-206ENST00000533018 PHF8Q9UPP1 1060 aa26.06■■□□□ 1.76
PCF11-206ENST00000533018 RGS12O14924 1447 aa26.05■■□□□ 1.76
PCF11-206ENST00000533018 FNBP4Q8N3X1 1017 aaPredicted RBP26.05■■□□□ 1.76
PCF11-206ENST00000533018 MARF1Q9Y4F3 1742 aaKnown RBP26.04■■□□□ 1.76
PCF11-206ENST00000533018 PLEKHG5O94827 1062 aa26.03■■□□□ 1.76
PCF11-206ENST00000533018 PSME1Q06323 249 aa26.03■■□□□ 1.76
PCF11-206ENST00000533018 SPATA31A3Q5VYP0 1347 aa26.03■■□□□ 1.76
PCF11-206ENST00000533018 DLC1Q96QB1 1528 aa26.02■■□□□ 1.76
PCF11-206ENST00000533018 HAP1P54257 671 aaPredicted RBP26.01■■□□□ 1.75
PCF11-206ENST00000533018 HIRIP3Q9BW71 556 aaPredicted RBP26.01■■□□□ 1.75
PCF11-206ENST00000533018 LMOD2Q6P5Q4 547 aa26■■□□□ 1.75
PCF11-206ENST00000533018 ADGRB1O14514 1584 aa25.99■■□□□ 1.75
PCF11-206ENST00000533018 MINK1Q8N4C8 1332 aaPredicted RBP25.99■■□□□ 1.75
PCF11-206ENST00000533018 PMFBP1Q8TBY8 1022 aa25.99■■□□□ 1.75
PCF11-206ENST00000533018 STAC3Q96MF2 364 aa25.99■■□□□ 1.75
PCF11-206ENST00000533018 ATRNO75882 1429 aa25.97■■□□□ 1.75
PCF11-206ENST00000533018 BCL9LQ86UU0 1499 aa25.95■■□□□ 1.74
PCF11-206ENST00000533018 TNS3Q68CZ2 1445 aa25.95■■□□□ 1.74
PCF11-206ENST00000533018 CABLES1Q8TDN4 633 aa25.93■■□□□ 1.74
PCF11-206ENST00000533018 ANKARQ7Z5J8 1434 aa25.93■■□□□ 1.74
PCF11-206ENST00000533018 USP32Q8NFA0 1604 aa25.92■■□□□ 1.74
PCF11-206ENST00000533018 ADGRB2O60241 1585 aa25.92■■□□□ 1.74
PCF11-206ENST00000533018 GJD4Q96KN9 370 aaPredicted RBP25.91■■□□□ 1.74
PCF11-206ENST00000533018 SBNO1A3KN83 1393 aa25.91■■□□□ 1.74
PCF11-206ENST00000533018 ATAD2Q6PL18 1390 aa25.91■■□□□ 1.74
PCF11-206ENST00000533018 UNC5CLQ8IV45 518 aa25.9■■□□□ 1.74
PCF11-206ENST00000533018 EIF3AQ14152 1382 aaKnown RBP25.9■■□□□ 1.74
PCF11-206ENST00000533018 WASLO00401 505 aaPredicted RBP25.89■■□□□ 1.74
PCF11-206ENST00000533018 ARHGEF10O15013 1369 aa25.89■■□□□ 1.74
PCF11-206ENST00000533018 GPRASP1Q5JY77 1395 aa25.87■■□□□ 1.73
PCF11-206ENST00000533018 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.86■■□□□ 1.73
PCF11-206ENST00000533018 SLIT2O94813 1529 aa25.85■■□□□ 1.73
PCF11-206ENST00000533018 TULP4Q9NRJ4 1543 aa25.85■■□□□ 1.73
PCF11-206ENST00000533018 NGDNQ8NEJ9 315 aaKnown RBP25.85■■□□□ 1.73
PCF11-206ENST00000533018 ARHGEF28Q8N1W1 1705 aaKnown RBP25.85■■□□□ 1.73
PCF11-206ENST00000533018 PRR36Q9H6K5 1346 aa25.85■■□□□ 1.73
PCF11-206ENST00000533018 EP400Q96L91 3159 aa25.85■■□□□ 1.73
PCF11-206ENST00000533018 PAK3O75914 559 aaPredicted RBP25.83■■□□□ 1.73
PCF11-206ENST00000533018 CCDC9Q9Y3X0 531 aaKnown RBP25.83■■□□□ 1.73
PCF11-206ENST00000533018 ABCA3Q99758 1704 aa25.81■■□□□ 1.72
PCF11-206ENST00000533018 RALGAPBQ86X10 1494 aa25.8■■□□□ 1.72
PCF11-206ENST00000533018 PLCH1Q4KWH8 1693 aa25.8■■□□□ 1.72
PCF11-206ENST00000533018 TRPM3Q9HCF6 1732 aaPredicted RBP25.8■■□□□ 1.72
PCF11-206ENST00000533018 NUDT16Q96DE0 195 aaKnown RBP25.79■■□□□ 1.72
PCF11-206ENST00000533018 FAM83GA6ND36 823 aa25.78■■□□□ 1.72
PCF11-206ENST00000533018 GLI3P10071 1580 aa25.78■■□□□ 1.72
PCF11-206ENST00000533018 ITSN1Q15811 1721 aa25.77■■□□□ 1.72
PCF11-206ENST00000533018 CDK19Q9BWU1 502 aa25.77■■□□□ 1.72
PCF11-206ENST00000533018 NWD2Q9ULI1 1742 aa25.77■■□□□ 1.72
PCF11-206ENST00000533018 KIAA1210Q9ULL0 1709 aa25.77■■□□□ 1.72
PCF11-206ENST00000533018 VPS72Q15906 364 aa25.76■■□□□ 1.71
PCF11-206ENST00000533018 ALS2Q96Q42 1657 aa25.75■■□□□ 1.71
PCF11-206ENST00000533018 NBPF1Q3BBV0 1214 aa25.75■■□□□ 1.71
PCF11-206ENST00000533018 SEPT12Q8IYM1 358 aa25.73■■□□□ 1.71
PCF11-206ENST00000533018 ATP7BP35670 1465 aa25.72■■□□□ 1.71
PCF11-206ENST00000533018 A0A0G2JS52 829 aa25.72■■□□□ 1.71
PCF11-206ENST00000533018 MYT1Q01538 1121 aa25.72■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms