RNA–Protein interactions for RNA: ENST00000531842.1

USF1-210, Transcript of upstream transcription factor 1, humanhuman

TSL 5

Gene USF1, Length 720 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-210ENST00000531842 TRPC5Q9UL62 973 aaPredicted RBP13.77□□□□□ -0.21
USF1-210ENST00000531842 MYOM2P54296 1465 aa13.76□□□□□ -0.21
USF1-210ENST00000531842 FNBP4Q8N3X1 1017 aaPredicted RBP13.76□□□□□ -0.21
USF1-210ENST00000531842 GLI3P10071 1580 aa13.75□□□□□ -0.21
USF1-210ENST00000531842 PXDNQ92626 1479 aa13.75□□□□□ -0.21
USF1-210ENST00000531842 PTCH1Q13635 1447 aa13.75□□□□□ -0.21
USF1-210ENST00000531842 PLEKHG5O94827 1062 aa13.75□□□□□ -0.21
USF1-210ENST00000531842 ZRANB1Q9UGI0 708 aa13.75□□□□□ -0.21
USF1-210ENST00000531842 RGPD8O14715 1765 aaPredicted RBP13.75□□□□□ -0.21
USF1-210ENST00000531842 ESCO1Q5FWF5 840 aa13.74□□□□□ -0.21
USF1-210ENST00000531842 FOXO3O43524 673 aa13.73□□□□□ -0.21
USF1-210ENST00000531842 DEFB132Q7Z7B7 95 aa13.72□□□□□ -0.21
USF1-210ENST00000531842 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.71□□□□□ -0.21
USF1-210ENST00000531842 WAPLQ7Z5K2 1190 aa13.71□□□□□ -0.21
USF1-210ENST00000531842 CDC42BPGQ6DT37 1551 aa13.71□□□□□ -0.22
USF1-210ENST00000531842 RALGAPBQ86X10 1494 aa13.7□□□□□ -0.22
USF1-210ENST00000531842 FOXD1Q16676 465 aa13.7□□□□□ -0.22
USF1-210ENST00000531842 GJD4Q96KN9 370 aaPredicted RBP13.7□□□□□ -0.22
USF1-210ENST00000531842 STK26Q9P289 416 aa13.7□□□□□ -0.22
USF1-210ENST00000531842 PLEKHH1Q9ULM0 1364 aa13.7□□□□□ -0.22
USF1-210ENST00000531842 NAIPQ13075 1403 aa13.69□□□□□ -0.22
USF1-210ENST00000531842 FMN2Q9NZ56 1722 aa13.68□□□□□ -0.22
USF1-210ENST00000531842 PLCH1Q4KWH8 1693 aa13.68□□□□□ -0.22
USF1-210ENST00000531842 NPHP3Q7Z494 1330 aa13.67□□□□□ -0.22
USF1-210ENST00000531842 ADGRF5Q8IZF2 1346 aa13.67□□□□□ -0.22
USF1-210ENST00000531842 HFM1A2PYH4 1435 aa13.67□□□□□ -0.22
USF1-210ENST00000531842 CABLES1Q8TDN4 633 aa13.67□□□□□ -0.22
USF1-210ENST00000531842 USP32Q8NFA0 1604 aa13.67□□□□□ -0.22
USF1-210ENST00000531842 ABCA3Q99758 1704 aa13.67□□□□□ -0.22
USF1-210ENST00000531842 SLIT2O94813 1529 aa13.66□□□□□ -0.22
USF1-210ENST00000531842 VGFO15240 615 aaPredicted RBP13.66□□□□□ -0.22
USF1-210ENST00000531842 TMEM132EQ6IEE7 984 aa13.66□□□□□ -0.22
USF1-210ENST00000531842 IFT172Q9UG01 1749 aa13.66□□□□□ -0.22
USF1-210ENST00000531842 PRAG1Q86YV5 1406 aa13.65□□□□□ -0.22
USF1-210ENST00000531842 PSDA5PKW4 1024 aaPredicted RBP13.65□□□□□ -0.22
USF1-210ENST00000531842 UNC5CLQ8IV45 518 aa13.64□□□□□ -0.23
USF1-210ENST00000531842 BLMP54132 1417 aaPredicted RBP13.64□□□□□ -0.23
USF1-210ENST00000531842 RGL3Q3MIN7 710 aa13.63□□□□□ -0.23
USF1-210ENST00000531842 SEPT12Q8IYM1 358 aa13.63□□□□□ -0.23
USF1-210ENST00000531842 KNDC1Q76NI1 1749 aa13.62□□□□□ -0.23
USF1-210ENST00000531842 SPATA31A3Q5VYP0 1347 aa13.62□□□□□ -0.23
USF1-210ENST00000531842 KIF1AQ12756 1690 aa13.61□□□□□ -0.23
USF1-210ENST00000531842 FAM182BQ5T319 152 aa13.61□□□□□ -0.23
USF1-210ENST00000531842 CCDC125Q86Z20 511 aa13.61□□□□□ -0.23
USF1-210ENST00000531842 LRP5O75197 1615 aa13.61□□□□□ -0.23
USF1-210ENST00000531842 KRT28Q7Z3Y7 464 aa13.6□□□□□ -0.23
USF1-210ENST00000531842 SLC4A1APQ9BWU0 796 aaKnown RBP13.6□□□□□ -0.23
USF1-210ENST00000531842 RRBP1Q9P2E9 1410 aaKnown RBP13.6□□□□□ -0.23
USF1-210ENST00000531842 CCDC9Q9Y3X0 531 aaKnown RBP13.6□□□□□ -0.23
USF1-210ENST00000531842 NWD2Q9ULI1 1742 aa13.59□□□□□ -0.23
USF1-210ENST00000531842 RPGRIP1LQ68CZ1 1315 aa13.59□□□□□ -0.23
USF1-210ENST00000531842 NRAPQ86VF7 1730 aa13.59□□□□□ -0.23
USF1-210ENST00000531842 SAFB2Q14151 953 aaKnown RBP eCLIP13.58□□□□□ -0.24
USF1-210ENST00000531842 LMOD2Q6P5Q4 547 aa13.58□□□□□ -0.24
USF1-210ENST00000531842 LRPPRCP42704 1394 aaKnown RBP13.58□□□□□ -0.24
USF1-210ENST00000531842 TECPR2O15040 1411 aa13.57□□□□□ -0.24
USF1-210ENST00000531842 HAP1P54257 671 aaPredicted RBP13.57□□□□□ -0.24
USF1-210ENST00000531842 TNS3Q68CZ2 1445 aa13.56□□□□□ -0.24
USF1-210ENST00000531842 A0A0G2JS52 829 aa13.56□□□□□ -0.24
USF1-210ENST00000531842 MYT1Q01538 1121 aa13.56□□□□□ -0.24
USF1-210ENST00000531842 CCDC144AA2RUR9 1427 aa13.56□□□□□ -0.24
USF1-210ENST00000531842 FAM83GA6ND36 823 aa13.55□□□□□ -0.24
USF1-210ENST00000531842 SF3B2Q13435 895 aaKnown RBP13.55□□□□□ -0.24
USF1-210ENST00000531842 VPS72Q15906 364 aa13.55□□□□□ -0.24
USF1-210ENST00000531842 KRT27Q7Z3Y8 459 aa13.55□□□□□ -0.24
USF1-210ENST00000531842 SPATA31E1Q6ZUB1 1445 aa13.55□□□□□ -0.24
USF1-210ENST00000531842 YTHDC2Q9H6S0 1430 aaKnown RBP13.55□□□□□ -0.24
USF1-210ENST00000531842 TRPM3Q9HCF6 1732 aaPredicted RBP13.54□□□□□ -0.24
USF1-210ENST00000531842 HRCP23327 699 aa13.54□□□□□ -0.24
USF1-210ENST00000531842 FAM98CQ17RN3 349 aaKnown RBP13.54□□□□□ -0.24
USF1-210ENST00000531842 PMFBP1Q8TBY8 1022 aa13.54□□□□□ -0.24
USF1-210ENST00000531842 PHF8Q9UPP1 1060 aa13.54□□□□□ -0.24
USF1-210ENST00000531842 ABCC11Q96J66 1382 aa13.54□□□□□ -0.24
USF1-210ENST00000531842 TNS1Q9HBL0 1735 aaKnown RBP13.53□□□□□ -0.24
USF1-210ENST00000531842 EN1Q05925 392 aaPredicted RBP13.53□□□□□ -0.24
USF1-210ENST00000531842 PIK3C2GO75747 1445 aa13.53□□□□□ -0.24
USF1-210ENST00000531842 RGPD1P0DJD0 1748 aa13.53□□□□□ -0.24
USF1-210ENST00000531842 CRYBG1Q9Y4K1 1723 aa13.51□□□□□ -0.25
USF1-210ENST00000531842 NRXN1Q9ULB1 1477 aa13.51□□□□□ -0.25
USF1-210ENST00000531842 ONECUT3O60422 494 aaPredicted RBP13.51□□□□□ -0.25
USF1-210ENST00000531842 R3HDM1Q15032 1099 aaKnown RBP13.51□□□□□ -0.25
USF1-210ENST00000531842 CFAP70Q5T0N1 1121 aa13.51□□□□□ -0.25
USF1-210ENST00000531842 ALS2Q96Q42 1657 aa13.5□□□□□ -0.25
USF1-210ENST00000531842 BTG4Q9NY30 223 aa13.5□□□□□ -0.25
USF1-210ENST00000531842 PSME1Q06323 249 aa13.49□□□□□ -0.25
USF1-210ENST00000531842 PRAM1Q96QH2 718 aa13.49□□□□□ -0.25
USF1-210ENST00000531842 COL14A1Q05707 1796 aaKnown RBP13.48□□□□□ -0.25
USF1-210ENST00000531842 BAG6P46379 1132 aa13.48□□□□□ -0.25
USF1-210ENST00000531842 HIRIP3Q9BW71 556 aaPredicted RBP13.48□□□□□ -0.25
USF1-210ENST00000531842 ANKRD30BQ9BXX2 1392 aa13.47□□□□□ -0.25
USF1-210ENST00000531842 THSD7AQ9UPZ6 1657 aa13.47□□□□□ -0.25
USF1-210ENST00000531842 EZH2Q15910 746 aaKnown RBP13.47□□□□□ -0.25
USF1-210ENST00000531842 SBNO1A3KN83 1393 aa13.46□□□□□ -0.25
USF1-210ENST00000531842 PRR36Q9H6K5 1346 aa13.45□□□□□ -0.26
USF1-210ENST00000531842 MPHOSPH9Q99550 1183 aa13.45□□□□□ -0.26
USF1-210ENST00000531842 C14orf93Q9H972 538 aaKnown RBP13.45□□□□□ -0.26
USF1-210ENST00000531842 ARHGEF10O15013 1369 aa13.45□□□□□ -0.26
USF1-210ENST00000531842 SPATA31A5Q5VU36 1347 aa13.43□□□□□ -0.26
USF1-210ENST00000531842 SPATA31A7Q8IWB4 1347 aa13.43□□□□□ -0.26
USF1-210ENST00000531842 MINK1Q8N4C8 1332 aaPredicted RBP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms