RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	LIMD1	Q9UGP4	676 aa		10.37	□□□□□ -0.75
CD44-231	ENST00000531110	HLA-C	Q95604	372 aa		10.36	□□□□□ -0.75
CD44-231	ENST00000531110	ZBTB3	Q9H5J0	574 aa		10.36	□□□□□ -0.75
CD44-231	ENST00000531110	LILRB3	O75022	631 aa		10.35	□□□□□ -0.75
CD44-231	ENST00000531110	ADH1B	P00325	375 aa		10.35	□□□□□ -0.75
CD44-231	ENST00000531110	MTMR2	Q13614	643 aa		10.35	□□□□□ -0.75
CD44-231	ENST00000531110	MSS51	Q4VC12	460 aa		10.35	□□□□□ -0.75
CD44-231	ENST00000531110	PPP2R2D	Q66LE6	453 aa		10.35	□□□□□ -0.75
CD44-231	ENST00000531110	RETREG3	Q86VR2	466 aa		10.35	□□□□□ -0.75
CD44-231	ENST00000531110	POLR3E	Q9NVU0	708 aa		10.35	□□□□□ -0.75
CD44-231	ENST00000531110	GUCA2A	Q02747	115 aa		10.34	□□□□□ -0.75
CD44-231	ENST00000531110	PLSCR2	Q9NRY7	297 aa		10.34	□□□□□ -0.75
CD44-231	ENST00000531110	ZNF516	Q92618	1163 aa		10.33	□□□□□ -0.76
CD44-231	ENST00000531110	SPSB2	Q99619	263 aa		10.33	□□□□□ -0.76
CD44-231	ENST00000531110	USB1	Q9BQ65	265 aa	Known RBP	10.33	□□□□□ -0.76
CD44-231	ENST00000531110	HRC	P23327	699 aa		10.32	□□□□□ -0.76
CD44-231	ENST00000531110	DESI1	Q6ICB0	168 aa		10.32	□□□□□ -0.76
CD44-231	ENST00000531110	RNF19B	Q6ZMZ0	732 aa		10.32	□□□□□ -0.76
CD44-231	ENST00000531110	PCDHB15	Q9Y5E8	787 aa		10.32	□□□□□ -0.76
CD44-231	ENST00000531110	C6orf229	H3BNL8	230 aa		10.3	□□□□□ -0.76
CD44-231	ENST00000531110	PROCA1	Q8NCQ7	364 aa	Predicted RBP	10.3	□□□□□ -0.76
CD44-231	ENST00000531110	QPCT	Q16769	361 aa		10.29	□□□□□ -0.76
CD44-231	ENST00000531110	PLA2G2E	Q9NZK7	142 aa		10.29	□□□□□ -0.76
CD44-231	ENST00000531110	TLL1	O43897	1013 aa		10.28	□□□□□ -0.76
CD44-231	ENST00000531110	MMP16	P51512	607 aa		10.27	□□□□□ -0.77
CD44-231	ENST00000531110	FAM160A2	Q8N612	972 aa	Predicted RBP	10.27	□□□□□ -0.77
CD44-231	ENST00000531110	SLC6A16	Q9GZN6	736 aa		10.27	□□□□□ -0.77
CD44-231	ENST00000531110	NUTM2B	A6NNL0	878 aa	Predicted RBP	10.26	□□□□□ -0.77
CD44-231	ENST00000531110	NUTM2E	B1AL46	878 aa	Predicted RBP	10.26	□□□□□ -0.77
CD44-231	ENST00000531110	DXO	O77932	396 aa	Known RBP	10.26	□□□□□ -0.77
CD44-231	ENST00000531110	GGCX	P38435	758 aa		10.26	□□□□□ -0.77
CD44-231	ENST00000531110	NUTM2D	Q5VT03	806 aa	Predicted RBP	10.26	□□□□□ -0.77
CD44-231	ENST00000531110	NUTM2A	Q8IVF1	878 aa	Predicted RBP	10.26	□□□□□ -0.77
CD44-231	ENST00000531110	CSPP1	Q1MSJ5	1256 aa		10.25	□□□□□ -0.77
CD44-231	ENST00000531110	PRR7	Q8TB68	274 aa		10.25	□□□□□ -0.77
CD44-231	ENST00000531110	CABLES1	Q8TDN4	633 aa		10.25	□□□□□ -0.77
CD44-231	ENST00000531110	SYMPK	Q92797	1274 aa	Known RBP	10.25	□□□□□ -0.77
CD44-231	ENST00000531110	SOCS7	O14512	581 aa		10.24	□□□□□ -0.77
CD44-231	ENST00000531110	JUND	P17535	347 aa		10.24	□□□□□ -0.77
CD44-231	ENST00000531110	TMEM259	Q4ZIN3	620 aa		10.24	□□□□□ -0.77
CD44-231	ENST00000531110	HELB	Q8NG08	1087 aa	Predicted RBP	10.24	□□□□□ -0.77
CD44-231	ENST00000531110	NKX2-3	Q8TAU0	364 aa		10.24	□□□□□ -0.77
CD44-231	ENST00000531110	CFAP99	D6REC4	459 aa		10.23	□□□□□ -0.77
CD44-231	ENST00000531110	RFC5	P40937	340 aa		10.23	□□□□□ -0.77
CD44-231	ENST00000531110	RTL5	Q5HYW3	569 aa	Predicted RBP	10.23	□□□□□ -0.77
CD44-231	ENST00000531110	ATP1B4	Q9UN42	357 aa	Predicted RBP	10.23	□□□□□ -0.77
CD44-231	ENST00000531110		A0A0G2JS52	829 aa		10.22	□□□□□ -0.77
CD44-231	ENST00000531110	BANK1	Q8NDB2	785 aa		10.22	□□□□□ -0.77
CD44-231	ENST00000531110	MYT1	Q01538	1121 aa		10.21	□□□□□ -0.77
CD44-231	ENST00000531110	PTPRN	Q16849	979 aa		10.21	□□□□□ -0.77
CD44-231	ENST00000531110	S1PR4	O95977	384 aa		10.2	□□□□□ -0.78
CD44-231	ENST00000531110	FBXO31	Q5XUX0	539 aa	Predicted RBP	10.2	□□□□□ -0.78
CD44-231	ENST00000531110	LYPD8	Q6UX82	237 aa		10.2	□□□□□ -0.78
CD44-231	ENST00000531110	ANKLE1	Q8NAG6	615 aa		10.2	□□□□□ -0.78
CD44-231	ENST00000531110	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	10.2	□□□□□ -0.78
CD44-231	ENST00000531110	PPP1R18	Q6NYC8	613 aa		10.19	□□□□□ -0.78
CD44-231	ENST00000531110	PRDM9	Q9NQV7	894 aa		10.18	□□□□□ -0.78
CD44-231	ENST00000531110	RNF223	E7ERA6	249 aa		10.16	□□□□□ -0.78
CD44-231	ENST00000531110	RGS20	O76081	388 aa		10.15	□□□□□ -0.78
CD44-231	ENST00000531110	CCNYL3	P0C7X3	344 aa		10.15	□□□□□ -0.78
CD44-231	ENST00000531110	NUDT12	Q9BQG2	462 aa		10.14	□□□□□ -0.79
CD44-231	ENST00000531110	EVA1B	Q9NVM1	165 aa		10.14	□□□□□ -0.79
CD44-231	ENST00000531110	AP1G2	O75843	785 aa		10.13	□□□□□ -0.79
CD44-231	ENST00000531110	USP17L8	P0C7I0	530 aa		10.13	□□□□□ -0.79
CD44-231	ENST00000531110	FCF1	Q9Y324	198 aa	Known RBP	10.13	□□□□□ -0.79
CD44-231	ENST00000531110	APBB1	O00213	710 aa		10.12	□□□□□ -0.79
CD44-231	ENST00000531110	F12	P00748	615 aa	Predicted RBP	10.12	□□□□□ -0.79
CD44-231	ENST00000531110	CTDSPL2	Q05D32	466 aa		10.12	□□□□□ -0.79
CD44-231	ENST00000531110	FLII	Q13045	1269 aa		10.11	□□□□□ -0.79
CD44-231	ENST00000531110	TSC1	Q92574	1164 aa		10.11	□□□□□ -0.79
CD44-231	ENST00000531110	PER1	O15534	1290 aa	Predicted RBP	10.1	□□□□□ -0.79
CD44-231	ENST00000531110	RPIA	P49247	311 aa		10.1	□□□□□ -0.79
CD44-231	ENST00000531110	KCNH2	Q12809	1159 aa		10.1	□□□□□ -0.79
CD44-231	ENST00000531110		V9GY48	417 aa	Predicted RBP	10.08	□□□□□ -0.8
CD44-231	ENST00000531110	PPEF1	O14829	653 aa	Predicted RBP	10.07	□□□□□ -0.8
CD44-231	ENST00000531110	ZC3H4	Q9UPT8	1303 aa	Known RBP	10.07	□□□□□ -0.8
CD44-231	ENST00000531110	MCM6	Q14566	821 aa		10.06	□□□□□ -0.8
CD44-231	ENST00000531110	PNMA1	Q8ND90	353 aa		10.06	□□□□□ -0.8
CD44-231	ENST00000531110	ARMC2	Q8NEN0	867 aa		10.06	□□□□□ -0.8
CD44-231	ENST00000531110	ZBTB24	O43167	697 aa	Predicted RBP	10.05	□□□□□ -0.8
CD44-231	ENST00000531110	PLA2G2C	Q5R387	149 aa		10.05	□□□□□ -0.8
CD44-231	ENST00000531110	MTMR14	Q8NCE2	650 aa		10.05	□□□□□ -0.8
CD44-231	ENST00000531110	LRRN4	Q8WUT4	740 aa		10.05	□□□□□ -0.8
CD44-231	ENST00000531110	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	10.05	□□□□□ -0.8
CD44-231	ENST00000531110	CCDC24	Q8N4L8	307 aa		10.04	□□□□□ -0.8
CD44-231	ENST00000531110	GJD4	Q96KN9	370 aa	Predicted RBP	10.03	□□□□□ -0.8
CD44-231	ENST00000531110	UNC93B1	Q9H1C4	597 aa		10.03	□□□□□ -0.8
CD44-231	ENST00000531110	MAP10	Q9P2G4	905 aa		10.03	□□□□□ -0.8
CD44-231	ENST00000531110	GTF3C3	Q9Y5Q9	886 aa		10.03	□□□□□ -0.8
CD44-231	ENST00000531110	CTH	P32929	405 aa		10.02	□□□□□ -0.81
CD44-231	ENST00000531110	SLC19A1	P41440	591 aa		10.02	□□□□□ -0.81
CD44-231	ENST00000531110	WNT7B	P56706	349 aa		10.02	□□□□□ -0.81
CD44-231	ENST00000531110	TRIM34	Q9BYJ4	488 aa		10.02	□□□□□ -0.81
CD44-231	ENST00000531110	PRM3	Q9NNZ6	103 aa		10.02	□□□□□ -0.81
CD44-231	ENST00000531110	HMX1	Q9NP08	348 aa	Predicted RBP	10.02	□□□□□ -0.81
CD44-231	ENST00000531110	SNRK	Q9NRH2	765 aa		10.02	□□□□□ -0.81
CD44-231	ENST00000531110	TTBK1	Q5TCY1	1321 aa	Predicted RBP	10.02	□□□□□ -0.81
CD44-231	ENST00000531110	CD2BP2	O95400	341 aa	Known RBP	10.01	□□□□□ -0.81
CD44-231	ENST00000531110	TRIM32	Q13049	653 aa		10.01	□□□□□ -0.81
CD44-231	ENST00000531110	NBPF14	Q5TI25	921 aa		10.01	□□□□□ -0.81

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