RNA–Protein interactions for RNA: ENST00000530784.1

CSDE1-213, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-213ENST00000530784 RSBN1LQ6PCB5 846 aaPredicted RBP15.57■□□□□ 0.08
CSDE1-213ENST00000530784 DDRGK1Q96HY6 314 aa15.57■□□□□ 0.08
CSDE1-213ENST00000530784 PLEKHG3A1L390 1219 aa15.56■□□□□ 0.08
CSDE1-213ENST00000530784 GGCXP38435 758 aa15.56■□□□□ 0.08
CSDE1-213ENST00000530784 SPTLC1O15269 473 aa15.55■□□□□ 0.08
CSDE1-213ENST00000530784 RIC3Q7Z5B4 369 aa15.55■□□□□ 0.08
CSDE1-213ENST00000530784 USB1Q9BQ65 265 aaKnown RBP15.54■□□□□ 0.08
CSDE1-213ENST00000530784 PCDHB15Q9Y5E8 787 aa15.54■□□□□ 0.08
CSDE1-213ENST00000530784 RNF223E7ERA6 249 aa15.53■□□□□ 0.08
CSDE1-213ENST00000530784 PPEF1O14829 653 aaPredicted RBP15.53■□□□□ 0.08
CSDE1-213ENST00000530784 GJA5P36382 358 aa15.53■□□□□ 0.08
CSDE1-213ENST00000530784 C6orf229H3BNL8 230 aa15.52■□□□□ 0.08
CSDE1-213ENST00000530784 RSPH6AQ9H0K4 717 aa15.52■□□□□ 0.08
CSDE1-213ENST00000530784 PRDM9Q9NQV7 894 aa15.52■□□□□ 0.08
CSDE1-213ENST00000530784 LIMD1Q9UGP4 676 aa15.52■□□□□ 0.08
CSDE1-213ENST00000530784 MSS51Q4VC12 460 aa15.51■□□□□ 0.07
CSDE1-213ENST00000530784 POLR3EQ9NVU0 708 aa15.5■□□□□ 0.07
CSDE1-213ENST00000530784 IL27Q8NEV9 243 aa15.49■□□□□ 0.07
CSDE1-213ENST00000530784 CSPP1Q1MSJ5 1256 aa15.48■□□□□ 0.07
CSDE1-213ENST00000530784 RETREG3Q86VR2 466 aa15.47■□□□□ 0.07
CSDE1-213ENST00000530784 CLK2P49760 499 aaKnown RBP15.46■□□□□ 0.07
CSDE1-213ENST00000530784 MTMR2Q13614 643 aa15.46■□□□□ 0.07
CSDE1-213ENST00000530784 ANKLE1Q8NAG6 615 aa15.46■□□□□ 0.07
CSDE1-213ENST00000530784 RGS20O76081 388 aa15.45■□□□□ 0.06
CSDE1-213ENST00000530784 SH3D19Q5HYK7 790 aa15.44■□□□□ 0.06
CSDE1-213ENST00000530784 CABLES1Q8TDN4 633 aa15.44■□□□□ 0.06
CSDE1-213ENST00000530784 HRCP23327 699 aa15.43■□□□□ 0.06
CSDE1-213ENST00000530784 SKIV2LQ15477 1246 aaKnown RBP15.43■□□□□ 0.06
CSDE1-213ENST00000530784 MMP16P51512 607 aa15.42■□□□□ 0.06
CSDE1-213ENST00000530784 QPCTQ16769 361 aa15.42■□□□□ 0.06
CSDE1-213ENST00000530784 TUSC1Q2TAM9 212 aa15.42■□□□□ 0.06
CSDE1-213ENST00000530784 ZBTB3Q9H5J0 574 aa15.42■□□□□ 0.06
CSDE1-213ENST00000530784 SPDYE5A6NIY4 337 aa15.41■□□□□ 0.06
CSDE1-213ENST00000530784 DXOO77932 396 aaKnown RBP15.41■□□□□ 0.06
CSDE1-213ENST00000530784 PRPF38BQ5VTL8 546 aaKnown RBP15.41■□□□□ 0.06
CSDE1-213ENST00000530784 PRKD2Q9BZL6 878 aa15.41■□□□□ 0.06
CSDE1-213ENST00000530784 FCF1Q9Y324 198 aaKnown RBP15.41■□□□□ 0.06
CSDE1-213ENST00000530784 PROCA1Q8NCQ7 364 aaPredicted RBP15.4■□□□□ 0.06
CSDE1-213ENST00000530784 PRR7Q8TB68 274 aa15.4■□□□□ 0.06
CSDE1-213ENST00000530784 JUNDP17535 347 aa15.39■□□□□ 0.05
CSDE1-213ENST00000530784 PLA2G2CQ5R387 149 aa15.39■□□□□ 0.05
CSDE1-213ENST00000530784 EMID1Q96A84 441 aaPredicted RBP15.39■□□□□ 0.05
CSDE1-213ENST00000530784 LILRB3O75022 631 aa15.38■□□□□ 0.05
CSDE1-213ENST00000530784 NUTM2BA6NNL0 878 aaPredicted RBP15.37■□□□□ 0.05
CSDE1-213ENST00000530784 NUTM2EB1AL46 878 aaPredicted RBP15.37■□□□□ 0.05
CSDE1-213ENST00000530784 NUTM2DQ5VT03 806 aaPredicted RBP15.37■□□□□ 0.05
CSDE1-213ENST00000530784 NUTM2AQ8IVF1 878 aaPredicted RBP15.37■□□□□ 0.05
CSDE1-213ENST00000530784 CFAP99D6REC4 459 aa15.36■□□□□ 0.05
CSDE1-213ENST00000530784 ATP1B4Q9UN42 357 aaPredicted RBP15.36■□□□□ 0.05
CSDE1-213ENST00000530784 RTL5Q5HYW3 569 aaPredicted RBP15.35■□□□□ 0.05
CSDE1-213ENST00000530784 LIAT1Q6ZQX7 453 aa15.34■□□□□ 0.05
CSDE1-213ENST00000530784 SLC19A1P41440 591 aa15.33■□□□□ 0.04
CSDE1-213ENST00000530784 FBXO31Q5XUX0 539 aaPredicted RBP15.33■□□□□ 0.04
CSDE1-213ENST00000530784 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.33■□□□□ 0.04
CSDE1-213ENST00000530784 V9GY48 417 aaPredicted RBP15.33■□□□□ 0.04
CSDE1-213ENST00000530784 GOPCQ9HD26 462 aa15.32■□□□□ 0.04
CSDE1-213ENST00000530784 DESI1Q6ICB0 168 aa15.31■□□□□ 0.04
CSDE1-213ENST00000530784 CCDC24Q8N4L8 307 aa15.3■□□□□ 0.04
CSDE1-213ENST00000530784 TSC1Q92574 1164 aa15.28■□□□□ 0.04
CSDE1-213ENST00000530784 PCMTD1Q96MG8 357 aaPredicted RBP15.28■□□□□ 0.04
CSDE1-213ENST00000530784 NUDT12Q9BQG2 462 aa15.28■□□□□ 0.04
CSDE1-213ENST00000530784 PTPRNQ16849 979 aa15.26■□□□□ 0.03
CSDE1-213ENST00000530784 SPRYD7Q5W111 196 aa15.26■□□□□ 0.03
CSDE1-213ENST00000530784 CCNYL3P0C7X3 344 aa15.24■□□□□ 0.03
CSDE1-213ENST00000530784 RPIAP49247 311 aa15.24■□□□□ 0.03
CSDE1-213ENST00000530784 PPP2R2DQ66LE6 453 aa15.24■□□□□ 0.03
CSDE1-213ENST00000530784 LYPD8Q6UX82 237 aa15.24■□□□□ 0.03
CSDE1-213ENST00000530784 ZBTB24O43167 697 aaPredicted RBP15.23■□□□□ 0.03
CSDE1-213ENST00000530784 PER1O15534 1290 aaPredicted RBP15.22■□□□□ 0.03
CSDE1-213ENST00000530784 PTCRAQ6ISU1 281 aaPredicted RBP15.22■□□□□ 0.03
CSDE1-213ENST00000530784 ZNF598Q86UK7 904 aaKnown RBP15.21■□□□□ 0.03
CSDE1-213ENST00000530784 EVA1BQ9NVM1 165 aa15.21■□□□□ 0.03
CSDE1-213ENST00000530784 HELBQ8NG08 1087 aaPredicted RBP15.2■□□□□ 0.02
CSDE1-213ENST00000530784 CD2BP2O95400 341 aaKnown RBP15.19■□□□□ 0.02
CSDE1-213ENST00000530784 CTDSPL2Q05D32 466 aa15.18■□□□□ 0.02
CSDE1-213ENST00000530784 ZNF697Q5TEC3 545 aa15.18■□□□□ 0.02
CSDE1-213ENST00000530784 KCNH2Q12809 1159 aa15.17■□□□□ 0.02
CSDE1-213ENST00000530784 TRIM32Q13049 653 aa15.17■□□□□ 0.02
CSDE1-213ENST00000530784 RFC5P40937 340 aa15.16■□□□□ 0.02
CSDE1-213ENST00000530784 CTHP32929 405 aa15.15■□□□□ 0.02
CSDE1-213ENST00000530784 AP1G2O75843 785 aa15.14■□□□□ 0.01
CSDE1-213ENST00000530784 MAP10Q9P2G4 905 aa15.14■□□□□ 0.01
CSDE1-213ENST00000530784 F12P00748 615 aaPredicted RBP15.13■□□□□ 0.01
CSDE1-213ENST00000530784 UNC93B1Q9H1C4 597 aa15.13■□□□□ 0.01
CSDE1-213ENST00000530784 TRIM67Q6ZTA4 783 aa15.12■□□□□ 0.01
CSDE1-213ENST00000530784 IRX2Q9BZI1 471 aaPredicted RBP15.12■□□□□ 0.01
CSDE1-213ENST00000530784 LRRN4Q8WUT4 740 aa15.1■□□□□ 0.01
CSDE1-213ENST00000530784 FOXC1Q12948 553 aa15.08■□□□□ 0
CSDE1-213ENST00000530784 PKD2L1Q9P0L9 805 aa15.08■□□□□ 0
CSDE1-213ENST00000530784 PDZRN3Q9UPQ7 1066 aa15.08■□□□□ 0
CSDE1-213ENST00000530784 GDF9O60383 454 aa15.07■□□□□ 0
CSDE1-213ENST00000530784 GFRA3O60609 400 aa15.07■□□□□ 0
CSDE1-213ENST00000530784 SKOR1P84550 965 aa15.07■□□□□ 0
CSDE1-213ENST00000530784 TNFRSF10AO00220 468 aa15.06■□□□□ 0
CSDE1-213ENST00000530784 TMEM259Q4ZIN3 620 aa15.06■□□□□ 0
CSDE1-213ENST00000530784 BAP1Q92560 729 aa15.06■□□□□ 0
CSDE1-213ENST00000530784 LINC01559Q495D7 138 aa15.05■□□□□ -0
CSDE1-213ENST00000530784 USP17L8P0C7I0 530 aa15.04■□□□□ -0
CSDE1-213ENST00000530784 WNT7BP56706 349 aa15.04■□□□□ -0
CSDE1-213ENST00000530784 SH3BP2P78314 561 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms