RNA–Protein interactions for RNA: ENST00000530041.5

USP47-209, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 3

Gene USP47, Length 767 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-209ENST00000530041 GJA5P36382 358 aa11.05□□□□□ -0.64
USP47-209ENST00000530041 SYMPKQ92797 1274 aaKnown RBP11.04□□□□□ -0.64
USP47-209ENST00000530041 SLC19A1P41440 591 aa11.03□□□□□ -0.64
USP47-209ENST00000530041 MMP16P51512 607 aa11.03□□□□□ -0.64
USP47-209ENST00000530041 TPRNQ4KMQ1 711 aa11.03□□□□□ -0.64
USP47-209ENST00000530041 RSBN1LQ6PCB5 846 aaPredicted RBP11.03□□□□□ -0.64
USP47-209ENST00000530041 EMID1Q96A84 441 aaPredicted RBP11.03□□□□□ -0.64
USP47-209ENST00000530041 GPBP1L1Q9HC44 474 aaPredicted RBP11.03□□□□□ -0.64
USP47-209ENST00000530041 RETREG3Q86VR2 466 aa11.02□□□□□ -0.65
USP47-209ENST00000530041 KDM4CQ9H3R0 1056 aa11.02□□□□□ -0.65
USP47-209ENST00000530041 FCF1Q9Y324 198 aaKnown RBP11.02□□□□□ -0.65
USP47-209ENST00000530041 C6orf229H3BNL8 230 aa11.01□□□□□ -0.65
USP47-209ENST00000530041 SPTLC1O15269 473 aa11.01□□□□□ -0.65
USP47-209ENST00000530041 PLA2G2CQ5R387 149 aa11.01□□□□□ -0.65
USP47-209ENST00000530041 IRX2Q9BZI1 471 aaPredicted RBP11.01□□□□□ -0.65
USP47-209ENST00000530041 DXOO77932 396 aaKnown RBP11□□□□□ -0.65
USP47-209ENST00000530041 LIAT1Q6ZQX7 453 aa11□□□□□ -0.65
USP47-209ENST00000530041 RIC3Q7Z5B4 369 aa11□□□□□ -0.65
USP47-209ENST00000530041 MYSM1Q5VVJ2 828 aa10.99□□□□□ -0.65
USP47-209ENST00000530041 MTMR2Q13614 643 aa10.98□□□□□ -0.65
USP47-209ENST00000530041 SPRYD7Q5W111 196 aa10.98□□□□□ -0.65
USP47-209ENST00000530041 SPDYE5A6NIY4 337 aa10.97□□□□□ -0.65
USP47-209ENST00000530041 JUNDP17535 347 aa10.97□□□□□ -0.65
USP47-209ENST00000530041 RSPH6AQ9H0K4 717 aa10.97□□□□□ -0.65
USP47-209ENST00000530041 PCDHB15Q9Y5E8 787 aa10.97□□□□□ -0.65
USP47-209ENST00000530041 RPIAP49247 311 aa10.96□□□□□ -0.65
USP47-209ENST00000530041 DDRGK1Q96HY6 314 aa10.96□□□□□ -0.65
USP47-209ENST00000530041 TUSC1Q2TAM9 212 aa10.95□□□□□ -0.66
USP47-209ENST00000530041 PRPF38BQ5VTL8 546 aaKnown RBP10.95□□□□□ -0.66
USP47-209ENST00000530041 ZNF598Q86UK7 904 aaKnown RBP10.95□□□□□ -0.66
USP47-209ENST00000530041 FAM117AQ9C073 453 aa10.95□□□□□ -0.66
USP47-209ENST00000530041 ZBTB3Q9H5J0 574 aa10.94□□□□□ -0.66
USP47-209ENST00000530041 LIMD1Q9UGP4 676 aa10.94□□□□□ -0.66
USP47-209ENST00000530041 HRCP23327 699 aa10.93□□□□□ -0.66
USP47-209ENST00000530041 PRR7Q8TB68 274 aa10.93□□□□□ -0.66
USP47-209ENST00000530041 ZBTB24O43167 697 aaPredicted RBP10.92□□□□□ -0.66
USP47-209ENST00000530041 CLK2P49760 499 aaKnown RBP10.92□□□□□ -0.66
USP47-209ENST00000530041 LAPTM4AQ15012 233 aa10.92□□□□□ -0.66
USP47-209ENST00000530041 ZNF697Q5TEC3 545 aa10.92□□□□□ -0.66
USP47-209ENST00000530041 GFRA3O60609 400 aa10.91□□□□□ -0.66
USP47-209ENST00000530041 CD2BP2O95400 341 aaKnown RBP10.91□□□□□ -0.66
USP47-209ENST00000530041 NEUROD2Q15784 382 aa10.91□□□□□ -0.66
USP47-209ENST00000530041 CSPP1Q1MSJ5 1256 aa10.91□□□□□ -0.66
USP47-209ENST00000530041 DESI1Q6ICB0 168 aa10.91□□□□□ -0.66
USP47-209ENST00000530041 PLEKHG3A1L390 1219 aa10.9□□□□□ -0.66
USP47-209ENST00000530041 CCDC24Q8N4L8 307 aa10.9□□□□□ -0.66
USP47-209ENST00000530041 NUDT12Q9BQG2 462 aa10.9□□□□□ -0.66
USP47-209ENST00000530041 LILRB3O75022 631 aa10.89□□□□□ -0.67
USP47-209ENST00000530041 SH3D19Q5HYK7 790 aa10.89□□□□□ -0.67
USP47-209ENST00000530041 CABLES1Q8TDN4 633 aa10.89□□□□□ -0.67
USP47-209ENST00000530041 POLR3EQ9NVU0 708 aa10.89□□□□□ -0.67
USP47-209ENST00000530041 PDZRN3Q9UPQ7 1066 aa10.89□□□□□ -0.67
USP47-209ENST00000530041 CFAP99D6REC4 459 aa10.88□□□□□ -0.67
USP47-209ENST00000530041 SKIV2LQ15477 1246 aaKnown RBP10.88□□□□□ -0.67
USP47-209ENST00000530041 QPCTQ16769 361 aa10.88□□□□□ -0.67
USP47-209ENST00000530041 PTPRNQ16849 979 aa10.88□□□□□ -0.67
USP47-209ENST00000530041 TRIM67Q6ZTA4 783 aa10.88□□□□□ -0.67
USP47-209ENST00000530041 NUTM2BA6NNL0 878 aaPredicted RBP10.87□□□□□ -0.67
USP47-209ENST00000530041 NUTM2EB1AL46 878 aaPredicted RBP10.87□□□□□ -0.67
USP47-209ENST00000530041 NRG2O14511 850 aaPredicted RBP10.87□□□□□ -0.67
USP47-209ENST00000530041 BRPF1P55201 1214 aaPredicted RBP10.87□□□□□ -0.67
USP47-209ENST00000530041 NUTM2DQ5VT03 806 aaPredicted RBP10.87□□□□□ -0.67
USP47-209ENST00000530041 NUTM2AQ8IVF1 878 aaPredicted RBP10.87□□□□□ -0.67
USP47-209ENST00000530041 CCNYL3P0C7X3 344 aa10.86□□□□□ -0.67
USP47-209ENST00000530041 PRR20EP86478 221 aa10.86□□□□□ -0.67
USP47-209ENST00000530041 PRR20CP86479 221 aa10.86□□□□□ -0.67
USP47-209ENST00000530041 PRR20DP86480 221 aa10.86□□□□□ -0.67
USP47-209ENST00000530041 PRR20BP86481 221 aa10.86□□□□□ -0.67
USP47-209ENST00000530041 PRR20AP86496 221 aa10.86□□□□□ -0.67
USP47-209ENST00000530041 GDF9O60383 454 aa10.85□□□□□ -0.67
USP47-209ENST00000530041 TRIM32Q13049 653 aa10.85□□□□□ -0.67
USP47-209ENST00000530041 LYPD8Q6UX82 237 aa10.84□□□□□ -0.67
USP47-209ENST00000530041 EVA1BQ9NVM1 165 aa10.84□□□□□ -0.67
USP47-209ENST00000530041 PTCRAQ6ISU1 281 aaPredicted RBP10.83□□□□□ -0.68
USP47-209ENST00000530041 PKD2L1Q9P0L9 805 aa10.83□□□□□ -0.68
USP47-209ENST00000530041 RTL5Q5HYW3 569 aaPredicted RBP10.82□□□□□ -0.68
USP47-209ENST00000530041 PRKCSHP14314 528 aaPredicted RBP10.81□□□□□ -0.68
USP47-209ENST00000530041 KCNH2Q12809 1159 aa10.81□□□□□ -0.68
USP47-209ENST00000530041 FOXC1Q12948 553 aa10.81□□□□□ -0.68
USP47-209ENST00000530041 Q6ZNB5 142 aa10.81□□□□□ -0.68
USP47-209ENST00000530041 PROCA1Q8NCQ7 364 aaPredicted RBP10.81□□□□□ -0.68
USP47-209ENST00000530041 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.81□□□□□ -0.68
USP47-209ENST00000530041 TNFRSF10AO00220 468 aa10.8□□□□□ -0.68
USP47-209ENST00000530041 IL27Q8NEV9 243 aa10.8□□□□□ -0.68
USP47-209ENST00000530041 GOPCQ9HD26 462 aa10.8□□□□□ -0.68
USP47-209ENST00000530041 TSC1Q92574 1164 aa10.79□□□□□ -0.68
USP47-209ENST00000530041 WNT7AO00755 349 aa10.78□□□□□ -0.68
USP47-209ENST00000530041 WNT7BP56706 349 aa10.78□□□□□ -0.68
USP47-209ENST00000530041 HELBQ8NG08 1087 aaPredicted RBP10.78□□□□□ -0.68
USP47-209ENST00000530041 UNC93B1Q9H1C4 597 aa10.78□□□□□ -0.68
USP47-209ENST00000530041 ATP1B4Q9UN42 357 aaPredicted RBP10.78□□□□□ -0.68
USP47-209ENST00000530041 PER1O15534 1290 aaPredicted RBP10.77□□□□□ -0.69
USP47-209ENST00000530041 F12P00748 615 aaPredicted RBP10.77□□□□□ -0.69
USP47-209ENST00000530041 PPP2R2DQ66LE6 453 aa10.77□□□□□ -0.69
USP47-209ENST00000530041 CTHP32929 405 aa10.76□□□□□ -0.69
USP47-209ENST00000530041 SKOR1P84550 965 aa10.76□□□□□ -0.69
USP47-209ENST00000530041 FBXO31Q5XUX0 539 aaPredicted RBP10.75□□□□□ -0.69
USP47-209ENST00000530041 PCMTD1Q96MG8 357 aaPredicted RBP10.74□□□□□ -0.69
USP47-209ENST00000530041 TOR4AQ9NXH8 423 aa10.74□□□□□ -0.69
USP47-209ENST00000530041 MAP10Q9P2G4 905 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms