RNA–Protein interactions for RNA: ENST00000529813.1

USP47-208, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2

Gene USP47, Length 3,123 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-208ENST00000529813 MSH5O43196 834 aa6.54□□□□□ -1.36
USP47-208ENST00000529813 TMC1Q8TDI8 760 aa6.54□□□□□ -1.36
USP47-208ENST00000529813 LRRC59Q96AG4 307 aaKnown RBP6.54□□□□□ -1.36
USP47-208ENST00000529813 PHF8Q9UPP1 1060 aa6.54□□□□□ -1.36
USP47-208ENST00000529813 STRCP1A6NGW2 1772 aa6.54□□□□□ -1.36
USP47-208ENST00000529813 SOX12O15370 315 aa6.54□□□□□ -1.36
USP47-208ENST00000529813 NGLY1Q96IV0 654 aa6.54□□□□□ -1.36
USP47-208ENST00000529813 CABP2Q9NPB3 220 aa6.54□□□□□ -1.36
USP47-208ENST00000529813 IQSEC2Q5JU85 1478 aa6.54□□□□□ -1.36
USP47-208ENST00000529813 NBPF8Q3BBV2 869 aa6.54□□□□□ -1.36
USP47-208ENST00000529813 KRT28Q7Z3Y7 464 aa6.54□□□□□ -1.36
USP47-208ENST00000529813 CABLES1Q8TDN4 633 aa6.54□□□□□ -1.36
USP47-208ENST00000529813 CDK19Q9BWU1 502 aa6.54□□□□□ -1.36
USP47-208ENST00000529813 PIK3C2GO75747 1445 aa6.53□□□□□ -1.36
USP47-208ENST00000529813 ADGRL3Q9HAR2 1447 aa6.53□□□□□ -1.36
USP47-208ENST00000529813 ABCC11Q96J66 1382 aa6.53□□□□□ -1.36
USP47-208ENST00000529813 A0A0G2JS52 829 aa6.53□□□□□ -1.36
USP47-208ENST00000529813 MYT1Q01538 1121 aa6.53□□□□□ -1.36
USP47-208ENST00000529813 STAC3Q96MF2 364 aa6.53□□□□□ -1.36
USP47-208ENST00000529813 CCDC9Q9Y3X0 531 aaKnown RBP6.53□□□□□ -1.36
USP47-208ENST00000529813 FAM135BQ49AJ0 1406 aa6.53□□□□□ -1.36
USP47-208ENST00000529813 ILDR2Q71H61 639 aa6.53□□□□□ -1.36
USP47-208ENST00000529813 CENPJQ9HC77 1338 aaPredicted RBP6.53□□□□□ -1.36
USP47-208ENST00000529813 NPHP3Q7Z494 1330 aa6.52□□□□□ -1.37
USP47-208ENST00000529813 WASLO00401 505 aaPredicted RBP6.52□□□□□ -1.37
USP47-208ENST00000529813 NUDT16Q96DE0 195 aaKnown RBP6.52□□□□□ -1.37
USP47-208ENST00000529813 SETBP1Q9Y6X0 1596 aa6.52□□□□□ -1.37
USP47-208ENST00000529813 KDM5AP29375 1690 aaKnown RBP6.52□□□□□ -1.37
USP47-208ENST00000529813 JCADQ9P266 1359 aa6.51□□□□□ -1.37
USP47-208ENST00000529813 CNGB1Q14028 1251 aaPredicted RBP6.51□□□□□ -1.37
USP47-208ENST00000529813 C1orf167Q5SNV9 1468 aa6.51□□□□□ -1.37
USP47-208ENST00000529813 DIP2AQ14689 1571 aa6.51□□□□□ -1.37
USP47-208ENST00000529813 MST1RQ04912 1400 aa6.51□□□□□ -1.37
USP47-208ENST00000529813 GPRASP1Q5JY77 1395 aa6.5□□□□□ -1.37
USP47-208ENST00000529813 NRXN3Q9Y4C0 1643 aa6.5□□□□□ -1.37
USP47-208ENST00000529813 PTCH1Q13635 1447 aa6.5□□□□□ -1.37
USP47-208ENST00000529813 NCOA3Q9Y6Q9 1424 aa6.5□□□□□ -1.37
USP47-208ENST00000529813 CABP1Q9NZU7 370 aa6.5□□□□□ -1.37
USP47-208ENST00000529813 CHD2O14647 1828 aaKnown RBP6.49□□□□□ -1.37
USP47-208ENST00000529813 PRAG1Q86YV5 1406 aa6.49□□□□□ -1.37
USP47-208ENST00000529813 MYOM2P54296 1465 aa6.49□□□□□ -1.37
USP47-208ENST00000529813 ST20-MTHFSA0A0A6YYL1 179 aa6.49□□□□□ -1.37
USP47-208ENST00000529813 CCDC61Q9Y6R9 512 aa6.49□□□□□ -1.37
USP47-208ENST00000529813 EVC2Q86UK5 1308 aa6.49□□□□□ -1.37
USP47-208ENST00000529813 ROBO1Q9Y6N7 1651 aa6.48□□□□□ -1.37
USP47-208ENST00000529813 NWD1Q149M9 1564 aa6.48□□□□□ -1.37
USP47-208ENST00000529813 ZC3H6P61129 1189 aaKnown RBP6.48□□□□□ -1.37
USP47-208ENST00000529813 POTEAQ6S8J7 498 aa6.48□□□□□ -1.37
USP47-208ENST00000529813 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.48□□□□□ -1.37
USP47-208ENST00000529813 ABTB2Q8N961 1025 aa6.48□□□□□ -1.37
USP47-208ENST00000529813 SIRT1Q96EB6 747 aa6.48□□□□□ -1.37
USP47-208ENST00000529813 PPLO60437 1756 aa6.48□□□□□ -1.37
USP47-208ENST00000529813 AFF2P51816 1311 aa6.48□□□□□ -1.37
USP47-208ENST00000529813 PRR36Q9H6K5 1346 aa6.48□□□□□ -1.37
USP47-208ENST00000529813 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.48□□□□□ -1.37
USP47-208ENST00000529813 USP35Q9P2H5 1018 aa6.47□□□□□ -1.37
USP47-208ENST00000529813 ACEP12821 1306 aa6.47□□□□□ -1.37
USP47-208ENST00000529813 ASXL1Q8IXJ9 1541 aa6.47□□□□□ -1.37
USP47-208ENST00000529813 QTRT2Q9H974 415 aaKnown RBP6.47□□□□□ -1.37
USP47-208ENST00000529813 USP21Q9UK80 565 aa6.47□□□□□ -1.37
USP47-208ENST00000529813 DCCP43146 1447 aa6.47□□□□□ -1.37
USP47-208ENST00000529813 NLRP6P59044 892 aa6.47□□□□□ -1.37
USP47-208ENST00000529813 CHRNA2Q15822 529 aa6.47□□□□□ -1.37
USP47-208ENST00000529813 STRN4Q9NRL3 753 aa6.47□□□□□ -1.37
USP47-208ENST00000529813 SPATA31A6Q5VVP1 1343 aa6.47□□□□□ -1.37
USP47-208ENST00000529813 EIF3AQ14152 1382 aaKnown RBP6.47□□□□□ -1.37
USP47-208ENST00000529813 PRDM11Q9NQV5 511 aa6.46□□□□□ -1.37
USP47-208ENST00000529813 ZNF772Q68DY9 489 aaPredicted RBP6.46□□□□□ -1.38
USP47-208ENST00000529813 SOS2Q07890 1332 aaPredicted RBP6.46□□□□□ -1.38
USP47-208ENST00000529813 RXRBP28702 533 aa6.45□□□□□ -1.38
USP47-208ENST00000529813 SLC12A5Q9H2X9 1139 aa6.45□□□□□ -1.38
USP47-208ENST00000529813 XRN1Q8IZH2 1706 aaKnown RBP6.45□□□□□ -1.38
USP47-208ENST00000529813 TECPR2O15040 1411 aa6.45□□□□□ -1.38
USP47-208ENST00000529813 EVA1CP58658 441 aa6.45□□□□□ -1.38
USP47-208ENST00000529813 SPATA31A3Q5VYP0 1347 aa6.45□□□□□ -1.38
USP47-208ENST00000529813 PNPLA6Q8IY17 1366 aa6.45□□□□□ -1.38
USP47-208ENST00000529813 RGS17Q9UGC6 210 aaPredicted RBP6.45□□□□□ -1.38
USP47-208ENST00000529813 XIRP1Q702N8 1843 aaKnown RBP6.45□□□□□ -1.38
USP47-208ENST00000529813 NRXN1Q9ULB1 1477 aa6.45□□□□□ -1.38
USP47-208ENST00000529813 HDGFL2Q7Z4V5 671 aaPredicted RBP6.44□□□□□ -1.38
USP47-208ENST00000529813 PHLPP1O60346 1717 aa6.44□□□□□ -1.38
USP47-208ENST00000529813 TMF1P82094 1093 aa6.43□□□□□ -1.38
USP47-208ENST00000529813 BTG4Q9NY30 223 aa6.43□□□□□ -1.38
USP47-208ENST00000529813 NALCNQ8IZF0 1738 aa6.43□□□□□ -1.38
USP47-208ENST00000529813 PPIP5K1Q6PFW1 1433 aa6.43□□□□□ -1.38
USP47-208ENST00000529813 ADGRB1O14514 1584 aa6.43□□□□□ -1.38
USP47-208ENST00000529813 MED1Q15648 1581 aaPredicted RBP6.43□□□□□ -1.38
USP47-208ENST00000529813 CSB-PGBD3P0DP91 1061 aa6.43□□□□□ -1.38
USP47-208ENST00000529813 EIF4G2P78344 907 aaKnown RBP eCLIP6.43□□□□□ -1.38
USP47-208ENST00000529813 NLRP13Q86W25 1043 aa6.43□□□□□ -1.38
USP47-208ENST00000529813 USP47Q96K76 1375 aa6.42□□□□□ -1.38
USP47-208ENST00000529813 ZRANB1Q9UGI0 708 aa6.42□□□□□ -1.38
USP47-208ENST00000529813 TRPC5Q9UL62 973 aaPredicted RBP6.42□□□□□ -1.38
USP47-208ENST00000529813 FAM83GA6ND36 823 aa6.42□□□□□ -1.38
USP47-208ENST00000529813 LTV1Q96GA3 475 aaPredicted RBP6.42□□□□□ -1.38
USP47-208ENST00000529813 TERF2IPQ9NYB0 399 aa6.42□□□□□ -1.38
USP47-208ENST00000529813 SOCS7O14512 581 aa6.41□□□□□ -1.38
USP47-208ENST00000529813 PPM1GO15355 546 aaPredicted RBP6.41□□□□□ -1.38
USP47-208ENST00000529813 HSPA5P11021 654 aaKnown RBP6.41□□□□□ -1.38
USP47-208ENST00000529813 TNNT2P45379 298 aaPredicted RBP6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms