RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 FUT2Q10981 343 aa6.41□□□□□ -1.38
CD44-229ENST00000528672 Q3C1V9 767 aa6.41□□□□□ -1.38
CD44-229ENST00000528672 MYSM1Q5VVJ2 828 aa6.41□□□□□ -1.38
CD44-229ENST00000528672 BLOC1S3Q6QNY0 202 aa6.41□□□□□ -1.38
CD44-229ENST00000528672 TBC1D2Q9BYX2 928 aa6.41□□□□□ -1.38
CD44-229ENST00000528672 PCDHB15Q9Y5E8 787 aa6.41□□□□□ -1.38
CD44-229ENST00000528672 MOXD2PA6NHM9 499 aa6.4□□□□□ -1.38
CD44-229ENST00000528672 HOXA2O43364 376 aa6.4□□□□□ -1.38
CD44-229ENST00000528672 C14orf37Q86TY3 774 aa6.4□□□□□ -1.38
CD44-229ENST00000528672 ARXQ96QS3 562 aa6.4□□□□□ -1.38
CD44-229ENST00000528672 ADH1BP00325 375 aa6.39□□□□□ -1.39
CD44-229ENST00000528672 COPS2P61201 443 aa6.39□□□□□ -1.39
CD44-229ENST00000528672 TRIM67Q6ZTA4 783 aa6.39□□□□□ -1.39
CD44-229ENST00000528672 NUTM1Q86Y26 1132 aa6.39□□□□□ -1.39
CD44-229ENST00000528672 SUPT5HO00267 1087 aaKnown RBP6.38□□□□□ -1.39
CD44-229ENST00000528672 QPCTQ16769 361 aa6.38□□□□□ -1.39
CD44-229ENST00000528672 TUSC1Q2TAM9 212 aa6.38□□□□□ -1.39
CD44-229ENST00000528672 SCUBE3Q8IX30 993 aa6.38□□□□□ -1.39
CD44-229ENST00000528672 CABLES1Q8TDN4 633 aa6.38□□□□□ -1.39
CD44-229ENST00000528672 SYMPKQ92797 1274 aaKnown RBP6.38□□□□□ -1.39
CD44-229ENST00000528672 DDRGK1Q96HY6 314 aa6.38□□□□□ -1.39
CD44-229ENST00000528672 DGAT1O75907 488 aa6.37□□□□□ -1.39
CD44-229ENST00000528672 FMNL1O95466 1100 aaPredicted RBP6.37□□□□□ -1.39
CD44-229ENST00000528672 SLC19A1P41440 591 aa6.37□□□□□ -1.39
CD44-229ENST00000528672 MYT1Q01538 1121 aa6.37□□□□□ -1.39
CD44-229ENST00000528672 PUS10Q3MIT2 529 aaKnown RBP6.37□□□□□ -1.39
CD44-229ENST00000528672 MSS51Q4VC12 460 aa6.37□□□□□ -1.39
CD44-229ENST00000528672 THAP11Q96EK4 314 aa6.37□□□□□ -1.39
CD44-229ENST00000528672 PCDHGC3Q9UN70 934 aa6.37□□□□□ -1.39
CD44-229ENST00000528672 PKDCCQ504Y2 493 aa6.36□□□□□ -1.39
CD44-229ENST00000528672 RTL5Q5HYW3 569 aaPredicted RBP6.36□□□□□ -1.39
CD44-229ENST00000528672 EMID1Q96A84 441 aaPredicted RBP6.36□□□□□ -1.39
CD44-229ENST00000528672 RSPH6AQ9H0K4 717 aa6.36□□□□□ -1.39
CD44-229ENST00000528672 ATP1B4Q9UN42 357 aaPredicted RBP6.36□□□□□ -1.39
CD44-229ENST00000528672 SLC27A5Q9Y2P5 690 aa6.36□□□□□ -1.39
CD44-229ENST00000528672 SPDYE5A6NIY4 337 aa6.35□□□□□ -1.39
CD44-229ENST00000528672 POTECB2RU33 542 aa6.35□□□□□ -1.39
CD44-229ENST00000528672 RNF223E7ERA6 249 aa6.35□□□□□ -1.39
CD44-229ENST00000528672 SH3D19Q5HYK7 790 aa6.35□□□□□ -1.39
CD44-229ENST00000528672 BRICD5Q6PL45 260 aa6.35□□□□□ -1.39
CD44-229ENST00000528672 SPSB2Q99619 263 aa6.35□□□□□ -1.39
CD44-229ENST00000528672 PRR20EP86478 221 aa6.34□□□□□ -1.39
CD44-229ENST00000528672 PRR20CP86479 221 aa6.34□□□□□ -1.39
CD44-229ENST00000528672 PRR20DP86480 221 aa6.34□□□□□ -1.39
CD44-229ENST00000528672 PRR20BP86481 221 aa6.34□□□□□ -1.39
CD44-229ENST00000528672 PRR20AP86496 221 aa6.34□□□□□ -1.39
CD44-229ENST00000528672 SKIV2LQ15477 1246 aaKnown RBP6.34□□□□□ -1.39
CD44-229ENST00000528672 PRPF38BQ5VTL8 546 aaKnown RBP6.34□□□□□ -1.39
CD44-229ENST00000528672 SPRYD7Q5W111 196 aa6.34□□□□□ -1.39
CD44-229ENST00000528672 RIC3Q7Z5B4 369 aa6.34□□□□□ -1.39
CD44-229ENST00000528672 ZNF598Q86UK7 904 aaKnown RBP6.34□□□□□ -1.39
CD44-229ENST00000528672 ANKLE1Q8NAG6 615 aa6.34□□□□□ -1.39
CD44-229ENST00000528672 POM121Q96HA1 1249 aa6.34□□□□□ -1.39
CD44-229ENST00000528672 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.34□□□□□ -1.39
CD44-229ENST00000528672 SNRKQ9NRH2 765 aa6.34□□□□□ -1.39
CD44-229ENST00000528672 SPTLC1O15269 473 aa6.33□□□□□ -1.4
CD44-229ENST00000528672 CLK2P49760 499 aaKnown RBP6.33□□□□□ -1.4
CD44-229ENST00000528672 RSBN1LQ6PCB5 846 aaPredicted RBP6.33□□□□□ -1.4
CD44-229ENST00000528672 CLUAP1Q96AJ1 413 aa6.33□□□□□ -1.4
CD44-229ENST00000528672 SLC6A16Q9GZN6 736 aa6.33□□□□□ -1.4
CD44-229ENST00000528672 GOPCQ9HD26 462 aa6.33□□□□□ -1.4
CD44-229ENST00000528672 TLL1O43897 1013 aa6.32□□□□□ -1.4
CD44-229ENST00000528672 FDX1P10109 184 aa6.32□□□□□ -1.4
CD44-229ENST00000528672 DESI1Q6ICB0 168 aa6.32□□□□□ -1.4
CD44-229ENST00000528672 RETREG3Q86VR2 466 aa6.32□□□□□ -1.4
CD44-229ENST00000528672 PCMTD1Q96MG8 357 aaPredicted RBP6.32□□□□□ -1.4
CD44-229ENST00000528672 USB1Q9BQ65 265 aaKnown RBP6.32□□□□□ -1.4
CD44-229ENST00000528672 MMP16P51512 607 aa6.31□□□□□ -1.4
CD44-229ENST00000528672 RFC5P40937 340 aa6.3□□□□□ -1.4
CD44-229ENST00000528672 TREML4Q6UXN2 200 aa6.3□□□□□ -1.4
CD44-229ENST00000528672 LIAT1Q6ZQX7 453 aa6.3□□□□□ -1.4
CD44-229ENST00000528672 ARID3CA6NKF2 412 aa6.29□□□□□ -1.4
CD44-229ENST00000528672 GDF9O60383 454 aa6.29□□□□□ -1.4
CD44-229ENST00000528672 DXOO77932 396 aaKnown RBP6.29□□□□□ -1.4
CD44-229ENST00000528672 MTMR2Q13614 643 aa6.29□□□□□ -1.4
CD44-229ENST00000528672 LCE2AQ5TA79 106 aaPredicted RBP6.29□□□□□ -1.4
CD44-229ENST00000528672 RNF19BQ6ZMZ0 732 aa6.29□□□□□ -1.4
CD44-229ENST00000528672 HOMEZQ8IX15 550 aa6.29□□□□□ -1.4
CD44-229ENST00000528672 FAM160A2Q8N612 972 aaPredicted RBP6.29□□□□□ -1.4
CD44-229ENST00000528672 C1orf115Q9H7X2 142 aa6.29□□□□□ -1.4
CD44-229ENST00000528672 FAM187AA6NFU0 413 aa6.28□□□□□ -1.4
CD44-229ENST00000528672 PPEF1O14829 653 aaPredicted RBP6.28□□□□□ -1.4
CD44-229ENST00000528672 S1PR4O95977 384 aa6.28□□□□□ -1.4
CD44-229ENST00000528672 HRCP23327 699 aa6.28□□□□□ -1.4
CD44-229ENST00000528672 ZNF697Q5TEC3 545 aa6.28□□□□□ -1.4
CD44-229ENST00000528672 EPS8L1Q8TE68 723 aa6.28□□□□□ -1.4
CD44-229ENST00000528672 ZBTB3Q9H5J0 574 aa6.28□□□□□ -1.4
CD44-229ENST00000528672 CFAP99D6REC4 459 aa6.27□□□□□ -1.41
CD44-229ENST00000528672 LILRB3O75022 631 aa6.27□□□□□ -1.41
CD44-229ENST00000528672 JUNDP17535 347 aa6.27□□□□□ -1.41
CD44-229ENST00000528672 HMX1Q9NP08 348 aaPredicted RBP6.27□□□□□ -1.41
CD44-229ENST00000528672 AAASQ9NRG9 546 aa6.27□□□□□ -1.41
CD44-229ENST00000528672 PER1O15534 1290 aaPredicted RBP6.26□□□□□ -1.41
CD44-229ENST00000528672 RPIAP49247 311 aa6.26□□□□□ -1.41
CD44-229ENST00000528672 CTDSPL2Q05D32 466 aa6.26□□□□□ -1.41
CD44-229ENST00000528672 MCM6Q14566 821 aa6.26□□□□□ -1.41
CD44-229ENST00000528672 C6orf229H3BNL8 230 aa6.25□□□□□ -1.41
CD44-229ENST00000528672 TNFRSF10AO00220 468 aa6.25□□□□□ -1.41
CD44-229ENST00000528672 AP1G2O75843 785 aa6.25□□□□□ -1.41
CD44-229ENST00000528672 PTPRNQ16849 979 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms