RNA–Protein interactions for RNA: ENST00000526829.1

VPS11-202, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS11, Length 1,952 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-202ENST00000526829 NALCNQ8IZF0 1738 aa15.81■□□□□ 0.12
VPS11-202ENST00000526829 SETD5Q9C0A6 1442 aa15.8■□□□□ 0.12
VPS11-202ENST00000526829 TRIM52Q96A61 297 aa15.78■□□□□ 0.12
VPS11-202ENST00000526829 PRAG1Q86YV5 1406 aa15.78■□□□□ 0.12
VPS11-202ENST00000526829 PTCH1Q13635 1447 aa15.77■□□□□ 0.12
VPS11-202ENST00000526829 MEX3CQ5U5Q3 659 aaKnown RBP15.76■□□□□ 0.11
VPS11-202ENST00000526829 ZNF772Q68DY9 489 aaPredicted RBP15.76■□□□□ 0.11
VPS11-202ENST00000526829 PPLO60437 1756 aa15.76■□□□□ 0.11
VPS11-202ENST00000526829 RPGRIP1LQ68CZ1 1315 aa15.76■□□□□ 0.11
VPS11-202ENST00000526829 VGFO15240 615 aaPredicted RBP15.76■□□□□ 0.11
VPS11-202ENST00000526829 LAMC1P11047 1609 aa15.75■□□□□ 0.11
VPS11-202ENST00000526829 SLC4A1APQ9BWU0 796 aaKnown RBP15.74■□□□□ 0.11
VPS11-202ENST00000526829 ROBO2Q9HCK4 1378 aa15.73■□□□□ 0.11
VPS11-202ENST00000526829 C1orf167Q5SNV9 1468 aa15.73■□□□□ 0.11
VPS11-202ENST00000526829 LRRC59Q96AG4 307 aaKnown RBP15.73■□□□□ 0.11
VPS11-202ENST00000526829 CLSPNQ9HAW4 1339 aa15.72■□□□□ 0.11
VPS11-202ENST00000526829 PNPLA6Q8IY17 1366 aa15.71■□□□□ 0.11
VPS11-202ENST00000526829 PDE4CQ08493 712 aa15.71■□□□□ 0.11
VPS11-202ENST00000526829 NUTM2BA6NNL0 878 aaPredicted RBP15.71■□□□□ 0.1
VPS11-202ENST00000526829 NUTM2EB1AL46 878 aaPredicted RBP15.71■□□□□ 0.1
VPS11-202ENST00000526829 NUTM2AQ8IVF1 878 aaPredicted RBP15.71■□□□□ 0.1
VPS11-202ENST00000526829 TULP1O00294 542 aaPredicted RBP15.7■□□□□ 0.1
VPS11-202ENST00000526829 CDK12Q9NYV4 1490 aaPredicted RBP15.7■□□□□ 0.1
VPS11-202ENST00000526829 DDX17Q92841 729 aaKnown RBP15.69■□□□□ 0.1
VPS11-202ENST00000526829 AFF2P51816 1311 aa15.68■□□□□ 0.1
VPS11-202ENST00000526829 RXRBP28702 533 aa15.67■□□□□ 0.1
VPS11-202ENST00000526829 ERICH6BQ5W0A0 696 aa15.67■□□□□ 0.1
VPS11-202ENST00000526829 IFT172Q9UG01 1749 aa15.67■□□□□ 0.1
VPS11-202ENST00000526829 YTHDC1Q96MU7 727 aaKnown RBP15.67■□□□□ 0.1
VPS11-202ENST00000526829 SOS2Q07890 1332 aaPredicted RBP15.67■□□□□ 0.1
VPS11-202ENST00000526829 SPATA31E1Q6ZUB1 1445 aa15.66■□□□□ 0.1
VPS11-202ENST00000526829 CDC42BPGQ6DT37 1551 aa15.66■□□□□ 0.1
VPS11-202ENST00000526829 FOXD1Q16676 465 aa15.66■□□□□ 0.1
VPS11-202ENST00000526829 ORAI2Q96SN7 254 aa15.66■□□□□ 0.1
VPS11-202ENST00000526829 MIER1Q8N108 512 aa15.65■□□□□ 0.1
VPS11-202ENST00000526829 UPF1Q92900 1129 aaKnown RBP eCLIP15.65■□□□□ 0.1
VPS11-202ENST00000526829 CCDC144AA2RUR9 1427 aa15.65■□□□□ 0.1
VPS11-202ENST00000526829 TECPR2O15040 1411 aa15.64■□□□□ 0.09
VPS11-202ENST00000526829 ADGRF5Q8IZF2 1346 aa15.64■□□□□ 0.09
VPS11-202ENST00000526829 COL22A1Q8NFW1 1626 aaPredicted RBP15.63■□□□□ 0.09
VPS11-202ENST00000526829 ANKRD30BQ9BXX2 1392 aa15.62■□□□□ 0.09
VPS11-202ENST00000526829 C8orf37Q96NL8 207 aa15.62■□□□□ 0.09
VPS11-202ENST00000526829 MPHOSPH9Q99550 1183 aa15.62■□□□□ 0.09
VPS11-202ENST00000526829 KNDC1Q76NI1 1749 aa15.62■□□□□ 0.09
VPS11-202ENST00000526829 LRPPRCP42704 1394 aaKnown RBP15.61■□□□□ 0.09
VPS11-202ENST00000526829 TAOK2Q9UL54 1235 aa15.6■□□□□ 0.09
VPS11-202ENST00000526829 RGS12O14924 1447 aa15.6■□□□□ 0.09
VPS11-202ENST00000526829 PIK3C2GO75747 1445 aa15.6■□□□□ 0.09
VPS11-202ENST00000526829 RBM6P78332 1123 aaKnown RBP15.6■□□□□ 0.09
VPS11-202ENST00000526829 QTRT2Q9H974 415 aaKnown RBP15.6■□□□□ 0.09
VPS11-202ENST00000526829 ABCC11Q96J66 1382 aa15.59■□□□□ 0.09
VPS11-202ENST00000526829 PXDNQ92626 1479 aa15.59■□□□□ 0.09
VPS11-202ENST00000526829 RGL3Q3MIN7 710 aa15.58■□□□□ 0.09
VPS11-202ENST00000526829 ADAMTS2O95450 1211 aa15.58■□□□□ 0.08
VPS11-202ENST00000526829 NGLY1Q96IV0 654 aa15.58■□□□□ 0.08
VPS11-202ENST00000526829 MYOM2P54296 1465 aa15.57■□□□□ 0.08
VPS11-202ENST00000526829 NPHP3Q7Z494 1330 aa15.57■□□□□ 0.08
VPS11-202ENST00000526829 FMN2Q9NZ56 1722 aa15.57■□□□□ 0.08
VPS11-202ENST00000526829 ESCO1Q5FWF5 840 aa15.56■□□□□ 0.08
VPS11-202ENST00000526829 WAPLQ7Z5K2 1190 aa15.56■□□□□ 0.08
VPS11-202ENST00000526829 PLEKHH1Q9ULM0 1364 aa15.56■□□□□ 0.08
VPS11-202ENST00000526829 NRXN1Q9ULB1 1477 aa15.55■□□□□ 0.08
VPS11-202ENST00000526829 FNBP4Q8N3X1 1017 aaPredicted RBP15.55■□□□□ 0.08
VPS11-202ENST00000526829 STK26Q9P289 416 aa15.55■□□□□ 0.08
VPS11-202ENST00000526829 MARF1Q9Y4F3 1742 aaKnown RBP15.55■□□□□ 0.08
VPS11-202ENST00000526829 YTHDC2Q9H6S0 1430 aaKnown RBP15.55■□□□□ 0.08
VPS11-202ENST00000526829 TMEM132EQ6IEE7 984 aa15.54■□□□□ 0.08
VPS11-202ENST00000526829 SIRT1Q96EB6 747 aa15.54■□□□□ 0.08
VPS11-202ENST00000526829 USP21Q9UK80 565 aa15.53■□□□□ 0.08
VPS11-202ENST00000526829 ATRNO75882 1429 aa15.53■□□□□ 0.08
VPS11-202ENST00000526829 KIF1AQ12756 1690 aa15.53■□□□□ 0.08
VPS11-202ENST00000526829 TRPC5Q9UL62 973 aaPredicted RBP15.53■□□□□ 0.08
VPS11-202ENST00000526829 SALL2Q9Y467 1007 aaPredicted RBP15.53■□□□□ 0.08
VPS11-202ENST00000526829 FOXO3O43524 673 aa15.52■□□□□ 0.07
VPS11-202ENST00000526829 C14orf93Q9H972 538 aaKnown RBP15.52■□□□□ 0.07
VPS11-202ENST00000526829 BCL9LQ86UU0 1499 aa15.5■□□□□ 0.07
VPS11-202ENST00000526829 XPCQ01831 940 aaPredicted RBP15.49■□□□□ 0.07
VPS11-202ENST00000526829 NUTM2FA1L443 756 aa15.49■□□□□ 0.07
VPS11-202ENST00000526829 FGD1P98174 961 aa15.49■□□□□ 0.07
VPS11-202ENST00000526829 TAF7LQ5H9L4 462 aa15.49■□□□□ 0.07
VPS11-202ENST00000526829 SUPT16HQ9Y5B9 1047 aaKnown RBP15.49■□□□□ 0.07
VPS11-202ENST00000526829 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.48■□□□□ 0.07
VPS11-202ENST00000526829 RGPD8O14715 1765 aaPredicted RBP15.47■□□□□ 0.07
VPS11-202ENST00000526829 SPATA31A3Q5VYP0 1347 aa15.47■□□□□ 0.07
VPS11-202ENST00000526829 DHX57Q6P158 1386 aaKnown RBP15.47■□□□□ 0.07
VPS11-202ENST00000526829 ATAD2Q6PL18 1390 aa15.47■□□□□ 0.07
VPS11-202ENST00000526829 DLC1Q96QB1 1528 aa15.47■□□□□ 0.07
VPS11-202ENST00000526829 CFAP70Q5T0N1 1121 aa15.47■□□□□ 0.07
VPS11-202ENST00000526829 RAB3GAP2Q9H2M9 1393 aa15.46■□□□□ 0.06
VPS11-202ENST00000526829 SLIT2O94813 1529 aa15.45■□□□□ 0.06
VPS11-202ENST00000526829 USP32Q8NFA0 1604 aa15.44■□□□□ 0.06
VPS11-202ENST00000526829 ADGRB1O14514 1584 aa15.44■□□□□ 0.06
VPS11-202ENST00000526829 KRT28Q7Z3Y7 464 aa15.44■□□□□ 0.06
VPS11-202ENST00000526829 TSHZ2Q9NRE2 1034 aa15.44■□□□□ 0.06
VPS11-202ENST00000526829 ADGRB2O60241 1585 aa15.44■□□□□ 0.06
VPS11-202ENST00000526829 PHF8Q9UPP1 1060 aa15.44■□□□□ 0.06
VPS11-202ENST00000526829 TNS3Q68CZ2 1445 aa15.43■□□□□ 0.06
VPS11-202ENST00000526829 NPM2Q86SE8 214 aaKnown RBP15.42■□□□□ 0.06
VPS11-202ENST00000526829 GJD4Q96KN9 370 aaPredicted RBP15.42■□□□□ 0.06
VPS11-202ENST00000526829 PRAM1Q96QH2 718 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms