RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 FCF1Q9Y324 198 aaKnown RBP8.73□□□□□ -1.01
CD44-219ENST00000525685 GFRA3O60609 400 aa8.72□□□□□ -1.01
CD44-219ENST00000525685 LAPTM4AQ15012 233 aa8.72□□□□□ -1.01
CD44-219ENST00000525685 FDX1P10109 184 aa8.71□□□□□ -1.02
CD44-219ENST00000525685 MMP16P51512 607 aa8.71□□□□□ -1.02
CD44-219ENST00000525685 PCDHGC3Q9UN70 934 aa8.71□□□□□ -1.02
CD44-219ENST00000525685 TRIM67Q6ZTA4 783 aa8.7□□□□□ -1.02
CD44-219ENST00000525685 ZNF598Q86UK7 904 aaKnown RBP8.7□□□□□ -1.02
CD44-219ENST00000525685 MOXD2PA6NHM9 499 aa8.69□□□□□ -1.02
CD44-219ENST00000525685 DXOO77932 396 aaKnown RBP8.69□□□□□ -1.02
CD44-219ENST00000525685 NDUFV2P19404 249 aa8.69□□□□□ -1.02
CD44-219ENST00000525685 TPRNQ4KMQ1 711 aa8.69□□□□□ -1.02
CD44-219ENST00000525685 SYMPKQ92797 1274 aaKnown RBP8.69□□□□□ -1.02
CD44-219ENST00000525685 PDZRN3Q9UPQ7 1066 aa8.69□□□□□ -1.02
CD44-219ENST00000525685 NRG2O14511 850 aaPredicted RBP8.68□□□□□ -1.02
CD44-219ENST00000525685 RPIAP49247 311 aa8.68□□□□□ -1.02
CD44-219ENST00000525685 ZNF697Q5TEC3 545 aa8.68□□□□□ -1.02
CD44-219ENST00000525685 TBC1D2Q9BYX2 928 aa8.68□□□□□ -1.02
CD44-219ENST00000525685 RETREG3Q86VR2 466 aa8.67□□□□□ -1.02
CD44-219ENST00000525685 DIXDC1Q155Q3 683 aa8.66□□□□□ -1.02
CD44-219ENST00000525685 Q6ZNB5 142 aa8.66□□□□□ -1.02
CD44-219ENST00000525685 GJA5P36382 358 aa8.65□□□□□ -1.02
CD44-219ENST00000525685 C6orf229H3BNL8 230 aa8.64□□□□□ -1.03
CD44-219ENST00000525685 GDF9O60383 454 aa8.64□□□□□ -1.03
CD44-219ENST00000525685 JUNDP17535 347 aa8.64□□□□□ -1.03
CD44-219ENST00000525685 PRR20EP86478 221 aa8.64□□□□□ -1.03
CD44-219ENST00000525685 PRR20CP86479 221 aa8.64□□□□□ -1.03
CD44-219ENST00000525685 PRR20DP86480 221 aa8.64□□□□□ -1.03
CD44-219ENST00000525685 PRR20BP86481 221 aa8.64□□□□□ -1.03
CD44-219ENST00000525685 PRR20AP86496 221 aa8.64□□□□□ -1.03
CD44-219ENST00000525685 RSBN1LQ6PCB5 846 aaPredicted RBP8.64□□□□□ -1.03
CD44-219ENST00000525685 SPTLC1O15269 473 aa8.63□□□□□ -1.03
CD44-219ENST00000525685 PRKCSHP14314 528 aaPredicted RBP8.63□□□□□ -1.03
CD44-219ENST00000525685 LCE2BO14633 110 aa8.62□□□□□ -1.03
CD44-219ENST00000525685 CD2BP2O95400 341 aaKnown RBP8.62□□□□□ -1.03
CD44-219ENST00000525685 ZBTB24O43167 697 aaPredicted RBP8.61□□□□□ -1.03
CD44-219ENST00000525685 PKD2L1Q9P0L9 805 aa8.61□□□□□ -1.03
CD44-219ENST00000525685 PCDHB15Q9Y5E8 787 aa8.61□□□□□ -1.03
CD44-219ENST00000525685 SPDYE5A6NIY4 337 aa8.6□□□□□ -1.03
CD44-219ENST00000525685 TNFRSF10AO00220 468 aa8.6□□□□□ -1.03
CD44-219ENST00000525685 MTMR2Q13614 643 aa8.6□□□□□ -1.03
CD44-219ENST00000525685 MYSM1Q5VVJ2 828 aa8.6□□□□□ -1.03
CD44-219ENST00000525685 RIC3Q7Z5B4 369 aa8.6□□□□□ -1.03
CD44-219ENST00000525685 TRIM32Q13049 653 aa8.59□□□□□ -1.03
CD44-219ENST00000525685 TRAF7Q6Q0C0 670 aa8.59□□□□□ -1.03
CD44-219ENST00000525685 CCDC24Q8N4L8 307 aa8.59□□□□□ -1.03
CD44-219ENST00000525685 PRR7Q8TB68 274 aa8.59□□□□□ -1.03
CD44-219ENST00000525685 FOXC1Q12948 553 aa8.58□□□□□ -1.04
CD44-219ENST00000525685 NUDT12Q9BQG2 462 aa8.58□□□□□ -1.04
CD44-219ENST00000525685 GPBP1L1Q9HC44 474 aaPredicted RBP8.57□□□□□ -1.04
CD44-219ENST00000525685 LIMD1Q9UGP4 676 aa8.57□□□□□ -1.04
CD44-219ENST00000525685 HRCP23327 699 aa8.56□□□□□ -1.04
CD44-219ENST00000525685 PTPRNQ16849 979 aa8.56□□□□□ -1.04
CD44-219ENST00000525685 TUSC1Q2TAM9 212 aa8.56□□□□□ -1.04
CD44-219ENST00000525685 PRPF38BQ5VTL8 546 aaKnown RBP8.56□□□□□ -1.04
CD44-219ENST00000525685 DESI1Q6ICB0 168 aa8.56□□□□□ -1.04
CD44-219ENST00000525685 KDM4CQ9H3R0 1056 aa8.56□□□□□ -1.04
CD44-219ENST00000525685 ZBTB3Q9H5J0 574 aa8.56□□□□□ -1.04
CD44-219ENST00000525685 CFAP99D6REC4 459 aa8.55□□□□□ -1.04
CD44-219ENST00000525685 DGAT1O75907 488 aa8.55□□□□□ -1.04
CD44-219ENST00000525685 CCNYL3P0C7X3 344 aa8.55□□□□□ -1.04
CD44-219ENST00000525685 PTCRAQ6ISU1 281 aaPredicted RBP8.55□□□□□ -1.04
CD44-219ENST00000525685 CABLES1Q8TDN4 633 aa8.55□□□□□ -1.04
CD44-219ENST00000525685 CSPP1Q1MSJ5 1256 aa8.54□□□□□ -1.04
CD44-219ENST00000525685 TOR4AQ9NXH8 423 aa8.54□□□□□ -1.04
CD44-219ENST00000525685 WNT7AO00755 349 aa8.53□□□□□ -1.04
CD44-219ENST00000525685 SKOR1P84550 965 aa8.53□□□□□ -1.04
CD44-219ENST00000525685 QPCTQ16769 361 aa8.53□□□□□ -1.04
CD44-219ENST00000525685 PKDCCQ504Y2 493 aa8.53□□□□□ -1.04
CD44-219ENST00000525685 RSPH6AQ9H0K4 717 aa8.53□□□□□ -1.04
CD44-219ENST00000525685 EVA1BQ9NVM1 165 aa8.53□□□□□ -1.04
CD44-219ENST00000525685 FAM187AA6NFU0 413 aa8.52□□□□□ -1.05
CD44-219ENST00000525685 LILRB3O75022 631 aa8.52□□□□□ -1.05
CD44-219ENST00000525685 CLK2P49760 499 aaKnown RBP8.52□□□□□ -1.05
CD44-219ENST00000525685 LYPD8Q6UX82 237 aa8.52□□□□□ -1.05
CD44-219ENST00000525685 FAM117AQ9C073 453 aa8.52□□□□□ -1.05
CD44-219ENST00000525685 WNT7BP56706 349 aa8.51□□□□□ -1.05
CD44-219ENST00000525685 CYP4X1Q8N118 509 aa8.51□□□□□ -1.05
CD44-219ENST00000525685 MYT1Q01538 1121 aa8.5□□□□□ -1.05
CD44-219ENST00000525685 KCNH2Q12809 1159 aa8.5□□□□□ -1.05
CD44-219ENST00000525685 DDRGK1Q96HY6 314 aa8.5□□□□□ -1.05
CD44-219ENST00000525685 MRGPRX2Q96LB1 330 aa8.5□□□□□ -1.05
CD44-219ENST00000525685 POLR3EQ9NVU0 708 aa8.5□□□□□ -1.05
CD44-219ENST00000525685 PLEKHG3A1L390 1219 aa8.49□□□□□ -1.05
CD44-219ENST00000525685 RC3H1Q5TC82 1133 aaKnown RBP8.49□□□□□ -1.05
CD44-219ENST00000525685 UNC93B1Q9H1C4 597 aa8.49□□□□□ -1.05
CD44-219ENST00000525685 NUTM2BA6NNL0 878 aaPredicted RBP8.48□□□□□ -1.05
CD44-219ENST00000525685 NUTM2EB1AL46 878 aaPredicted RBP8.48□□□□□ -1.05
CD44-219ENST00000525685 SH3D19Q5HYK7 790 aa8.48□□□□□ -1.05
CD44-219ENST00000525685 RTL5Q5HYW3 569 aaPredicted RBP8.48□□□□□ -1.05
CD44-219ENST00000525685 NUTM2DQ5VT03 806 aaPredicted RBP8.48□□□□□ -1.05
CD44-219ENST00000525685 NUTM2AQ8IVF1 878 aaPredicted RBP8.48□□□□□ -1.05
CD44-219ENST00000525685 PER1O15534 1290 aaPredicted RBP8.47□□□□□ -1.05
CD44-219ENST00000525685 F12P00748 615 aaPredicted RBP8.47□□□□□ -1.05
CD44-219ENST00000525685 SKIV2LQ15477 1246 aaKnown RBP8.47□□□□□ -1.05
CD44-219ENST00000525685 SNIP1Q8TAD8 396 aaKnown RBP8.47□□□□□ -1.05
CD44-219ENST00000525685 TTC24A2A3L6 582 aaPredicted RBP8.46□□□□□ -1.06
CD44-219ENST00000525685 SH3BP2P78314 561 aa8.46□□□□□ -1.06
CD44-219ENST00000525685 AVPP01185 164 aa8.45□□□□□ -1.06
CD44-219ENST00000525685 SMPD1P17405 629 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms