RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-216	ENST00000525293	FDX1	P10109	184 aa		5.74	□□□□□ -1.49
CD44-216	ENST00000525293	MSS51	Q4VC12	460 aa		5.74	□□□□□ -1.49
CD44-216	ENST00000525293	PLA2G2C	Q5R387	149 aa		5.74	□□□□□ -1.49
CD44-216	ENST00000525293	LIAT1	Q6ZQX7	453 aa		5.74	□□□□□ -1.49
CD44-216	ENST00000525293	USB1	Q9BQ65	265 aa	Known RBP	5.74	□□□□□ -1.49
CD44-216	ENST00000525293	PCDHGC3	Q9UN70	934 aa		5.74	□□□□□ -1.49
CD44-216	ENST00000525293	FCF1	Q9Y324	198 aa	Known RBP	5.74	□□□□□ -1.49
CD44-216	ENST00000525293	TBC1D2	Q9BYX2	928 aa		5.73	□□□□□ -1.49
CD44-216	ENST00000525293	C6orf229	H3BNL8	230 aa		5.72	□□□□□ -1.49
CD44-216	ENST00000525293	DIXDC1	Q155Q3	683 aa		5.72	□□□□□ -1.49
CD44-216	ENST00000525293	SPRYD7	Q5W111	196 aa		5.72	□□□□□ -1.49
CD44-216	ENST00000525293	GFRA3	O60609	400 aa		5.71	□□□□□ -1.5
CD44-216	ENST00000525293	MMP16	P51512	607 aa		5.71	□□□□□ -1.5
CD44-216	ENST00000525293	DXO	O77932	396 aa	Known RBP	5.7	□□□□□ -1.5
CD44-216	ENST00000525293	RSBN1L	Q6PCB5	846 aa	Predicted RBP	5.7	□□□□□ -1.5
CD44-216	ENST00000525293	ZNF598	Q86UK7	904 aa	Known RBP	5.7	□□□□□ -1.5
CD44-216	ENST00000525293	RETREG3	Q86VR2	466 aa		5.7	□□□□□ -1.5
CD44-216	ENST00000525293	GPBP1L1	Q9HC44	474 aa	Predicted RBP	5.7	□□□□□ -1.5
CD44-216	ENST00000525293	PCDHB15	Q9Y5E8	787 aa		5.7	□□□□□ -1.5
CD44-216	ENST00000525293	JUND	P17535	347 aa		5.69	□□□□□ -1.5
CD44-216	ENST00000525293	ZNF697	Q5TEC3	545 aa		5.69	□□□□□ -1.5
CD44-216	ENST00000525293	RIC3	Q7Z5B4	369 aa		5.69	□□□□□ -1.5
CD44-216	ENST00000525293	CCDC24	Q8N4L8	307 aa		5.69	□□□□□ -1.5
CD44-216	ENST00000525293	PDZRN3	Q9UPQ7	1066 aa		5.69	□□□□□ -1.5
CD44-216	ENST00000525293	SPTLC1	O15269	473 aa		5.68	□□□□□ -1.5
CD44-216	ENST00000525293	ZBTB24	O43167	697 aa	Predicted RBP	5.68	□□□□□ -1.5
CD44-216	ENST00000525293	CD2BP2	O95400	341 aa	Known RBP	5.68	□□□□□ -1.5
CD44-216	ENST00000525293	GJA5	P36382	358 aa		5.68	□□□□□ -1.5
CD44-216	ENST00000525293	RPIA	P49247	311 aa		5.68	□□□□□ -1.5
CD44-216	ENST00000525293	MTMR2	Q13614	643 aa		5.68	□□□□□ -1.5
CD44-216	ENST00000525293	LAPTM4A	Q15012	233 aa		5.68	□□□□□ -1.5
CD44-216	ENST00000525293	CSPP1	Q1MSJ5	1256 aa		5.68	□□□□□ -1.5
CD44-216	ENST00000525293	MYSM1	Q5VVJ2	828 aa		5.68	□□□□□ -1.5
CD44-216	ENST00000525293	KDM4C	Q9H3R0	1056 aa		5.68	□□□□□ -1.5
CD44-216	ENST00000525293	TPRN	Q4KMQ1	711 aa		5.67	□□□□□ -1.5
CD44-216	ENST00000525293	TRIM67	Q6ZTA4	783 aa		5.67	□□□□□ -1.5
CD44-216	ENST00000525293	PRR7	Q8TB68	274 aa		5.67	□□□□□ -1.5
CD44-216	ENST00000525293	LIMD1	Q9UGP4	676 aa		5.67	□□□□□ -1.5
CD44-216	ENST00000525293	SPDYE5	A6NIY4	337 aa		5.66	□□□□□ -1.5
CD44-216	ENST00000525293	TNFRSF10A	O00220	468 aa		5.66	□□□□□ -1.5
CD44-216	ENST00000525293	NRG2	O14511	850 aa	Predicted RBP	5.66	□□□□□ -1.5
CD44-216	ENST00000525293	HRC	P23327	699 aa		5.66	□□□□□ -1.5
CD44-216	ENST00000525293	FOXC1	Q12948	553 aa		5.66	□□□□□ -1.5
CD44-216	ENST00000525293	TRAF7	Q6Q0C0	670 aa		5.66	□□□□□ -1.5
CD44-216	ENST00000525293	CABLES1	Q8TDN4	633 aa		5.66	□□□□□ -1.5
CD44-216	ENST00000525293	FAM117A	Q9C073	453 aa		5.66	□□□□□ -1.5
CD44-216	ENST00000525293	POLR3E	Q9NVU0	708 aa		5.66	□□□□□ -1.5
CD44-216	ENST00000525293	GDF9	O60383	454 aa		5.65	□□□□□ -1.5
CD44-216	ENST00000525293	NUDT12	Q9BQG2	462 aa		5.65	□□□□□ -1.5
CD44-216	ENST00000525293	RSPH6A	Q9H0K4	717 aa		5.65	□□□□□ -1.5
CD44-216	ENST00000525293	ZBTB3	Q9H5J0	574 aa		5.65	□□□□□ -1.5
CD44-216	ENST00000525293	NUTM2B	A6NNL0	878 aa	Predicted RBP	5.64	□□□□□ -1.51
CD44-216	ENST00000525293	NUTM2E	B1AL46	878 aa	Predicted RBP	5.64	□□□□□ -1.51
CD44-216	ENST00000525293	CFAP99	D6REC4	459 aa		5.64	□□□□□ -1.51
CD44-216	ENST00000525293	TRIM32	Q13049	653 aa		5.64	□□□□□ -1.51
CD44-216	ENST00000525293	QPCT	Q16769	361 aa		5.64	□□□□□ -1.51
CD44-216	ENST00000525293	NUTM2D	Q5VT03	806 aa	Predicted RBP	5.64	□□□□□ -1.51
CD44-216	ENST00000525293	PRPF38B	Q5VTL8	546 aa	Known RBP	5.64	□□□□□ -1.51
CD44-216	ENST00000525293	PTCRA	Q6ISU1	281 aa	Predicted RBP	5.64	□□□□□ -1.51
CD44-216	ENST00000525293	NUTM2A	Q8IVF1	878 aa	Predicted RBP	5.64	□□□□□ -1.51
CD44-216	ENST00000525293	PKD2L1	Q9P0L9	805 aa		5.64	□□□□□ -1.51
CD44-216	ENST00000525293	CLK2	P49760	499 aa	Known RBP	5.63	□□□□□ -1.51
CD44-216	ENST00000525293	PRR20E	P86478	221 aa		5.63	□□□□□ -1.51
CD44-216	ENST00000525293	PRR20C	P86479	221 aa		5.63	□□□□□ -1.51
CD44-216	ENST00000525293	PRR20D	P86480	221 aa		5.63	□□□□□ -1.51
CD44-216	ENST00000525293	PRR20B	P86481	221 aa		5.63	□□□□□ -1.51
CD44-216	ENST00000525293	PRR20A	P86496	221 aa		5.63	□□□□□ -1.51
CD44-216	ENST00000525293	NEUROD2	Q15784	382 aa		5.63	□□□□□ -1.51
CD44-216	ENST00000525293	PTPRN	Q16849	979 aa		5.63	□□□□□ -1.51
CD44-216	ENST00000525293	DDRGK1	Q96HY6	314 aa		5.63	□□□□□ -1.51
CD44-216	ENST00000525293	ATP1B4	Q9UN42	357 aa	Predicted RBP	5.63	□□□□□ -1.51
CD44-216	ENST00000525293	PLEKHG3	A1L390	1219 aa		5.62	□□□□□ -1.51
CD44-216	ENST00000525293	LILRB3	O75022	631 aa		5.62	□□□□□ -1.51
CD44-216	ENST00000525293	CCNYL3	P0C7X3	344 aa		5.62	□□□□□ -1.51
CD44-216	ENST00000525293	TUSC1	Q2TAM9	212 aa		5.62	□□□□□ -1.51
CD44-216	ENST00000525293	DESI1	Q6ICB0	168 aa		5.62	□□□□□ -1.51
CD44-216	ENST00000525293	TSC1	Q92574	1164 aa		5.62	□□□□□ -1.51
CD44-216	ENST00000525293	EVA1B	Q9NVM1	165 aa		5.62	□□□□□ -1.51
CD44-216	ENST00000525293	KCNH2	Q12809	1159 aa		5.61	□□□□□ -1.51
CD44-216	ENST00000525293	SKIV2L	Q15477	1246 aa	Known RBP	5.61	□□□□□ -1.51
CD44-216	ENST00000525293	RTL5	Q5HYW3	569 aa	Predicted RBP	5.61	□□□□□ -1.51
CD44-216	ENST00000525293	FAM187A	A6NFU0	413 aa		5.6	□□□□□ -1.51
CD44-216	ENST00000525293	WNT7A	O00755	349 aa		5.6	□□□□□ -1.51
CD44-216	ENST00000525293	CTH	P32929	405 aa		5.6	□□□□□ -1.51
CD44-216	ENST00000525293	SKOR1	P84550	965 aa		5.6	□□□□□ -1.51
CD44-216	ENST00000525293	SH3D19	Q5HYK7	790 aa		5.6	□□□□□ -1.51
CD44-216	ENST00000525293	LYPD8	Q6UX82	237 aa		5.6	□□□□□ -1.51
CD44-216	ENST00000525293	CYP4X1	Q8N118	509 aa		5.6	□□□□□ -1.51
CD44-216	ENST00000525293	PROCA1	Q8NCQ7	364 aa	Predicted RBP	5.6	□□□□□ -1.51
CD44-216	ENST00000525293	PER1	O15534	1290 aa	Predicted RBP	5.59	□□□□□ -1.51
CD44-216	ENST00000525293	BRPF1	P55201	1214 aa	Predicted RBP	5.59	□□□□□ -1.51
CD44-216	ENST00000525293	WNT7B	P56706	349 aa		5.59	□□□□□ -1.51
CD44-216	ENST00000525293	PKDCC	Q504Y2	493 aa		5.59	□□□□□ -1.51
CD44-216	ENST00000525293	RC3H1	Q5TC82	1133 aa	Known RBP	5.59	□□□□□ -1.51
CD44-216	ENST00000525293	IL27	Q8NEV9	243 aa		5.59	□□□□□ -1.51
CD44-216	ENST00000525293	UNC93B1	Q9H1C4	597 aa		5.59	□□□□□ -1.51
CD44-216	ENST00000525293	TTC24	A2A3L6	582 aa	Predicted RBP	5.58	□□□□□ -1.52
CD44-216	ENST00000525293	DGAT1	O75907	488 aa		5.58	□□□□□ -1.52
CD44-216	ENST00000525293	LINC01559	Q495D7	138 aa		5.58	□□□□□ -1.52
CD44-216	ENST00000525293	BAP1	Q92560	729 aa		5.58	□□□□□ -1.52

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms