RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-212	ENST00000524922	LMOD2	Q6P5Q4	547 aa		4.88	□□□□□ -1.63
CD44-212	ENST00000524922	BARGIN	Q6ZT62	677 aa		4.88	□□□□□ -1.63
CD44-212	ENST00000524922	GPCPD1	Q9NPB8	672 aa		4.88	□□□□□ -1.63
CD44-212	ENST00000524922	PCDHGC3	Q9UN70	934 aa		4.88	□□□□□ -1.63
CD44-212	ENST00000524922	AVP	P01185	164 aa		4.87	□□□□□ -1.63
CD44-212	ENST00000524922	USP46	P62068	366 aa		4.87	□□□□□ -1.63
CD44-212	ENST00000524922	CRIPAK	Q8N1N5	446 aa		4.87	□□□□□ -1.63
CD44-212	ENST00000524922	CLCN1	P35523	988 aa		4.86	□□□□□ -1.63
CD44-212	ENST00000524922	AMHR2	Q16671	573 aa		4.86	□□□□□ -1.63
CD44-212	ENST00000524922		Q3C1V9	767 aa		4.86	□□□□□ -1.63
CD44-212	ENST00000524922	ZC3H15	Q8WU90	426 aa	Known RBP	4.86	□□□□□ -1.63
CD44-212	ENST00000524922	USB1	Q9BQ65	265 aa	Known RBP	4.86	□□□□□ -1.63
CD44-212	ENST00000524922	AAAS	Q9NRG9	546 aa		4.86	□□□□□ -1.63
CD44-212	ENST00000524922	FAM187A	A6NFU0	413 aa		4.85	□□□□□ -1.63
CD44-212	ENST00000524922	ST8SIA5	O15466	376 aa		4.85	□□□□□ -1.63
CD44-212	ENST00000524922	GRIPAP1	Q4V328	841 aa		4.85	□□□□□ -1.63
CD44-212	ENST00000524922	PKDCC	Q504Y2	493 aa		4.85	□□□□□ -1.63
CD44-212	ENST00000524922	LCE2A	Q5TA79	106 aa	Predicted RBP	4.85	□□□□□ -1.63
CD44-212	ENST00000524922	SYMPK	Q92797	1274 aa	Known RBP	4.85	□□□□□ -1.63
CD44-212	ENST00000524922	DACH1	Q9UI36	760 aa		4.85	□□□□□ -1.63
CD44-212	ENST00000524922	WNT7A	O00755	349 aa		4.84	□□□□□ -1.63
CD44-212	ENST00000524922	SKOR1	P84550	965 aa		4.84	□□□□□ -1.63
CD44-212	ENST00000524922	FOXC1	Q12948	553 aa		4.84	□□□□□ -1.63
CD44-212	ENST00000524922	TRIM32	Q13049	653 aa		4.84	□□□□□ -1.63
CD44-212	ENST00000524922	ZNF787	Q6DD87	383 aa		4.84	□□□□□ -1.63
CD44-212	ENST00000524922	ZNF775	Q96BV0	537 aa	Predicted RBP	4.84	□□□□□ -1.63
CD44-212	ENST00000524922	TULP1	O00294	542 aa	Predicted RBP	4.83	□□□□□ -1.64
CD44-212	ENST00000524922	CD2BP2	O95400	341 aa	Known RBP	4.83	□□□□□ -1.64
CD44-212	ENST00000524922	SMPD1	P17405	629 aa		4.83	□□□□□ -1.64
CD44-212	ENST00000524922	SSTR3	P32745	418 aa	Predicted RBP	4.83	□□□□□ -1.64
CD44-212	ENST00000524922	PTCRA	Q6ISU1	281 aa	Predicted RBP	4.83	□□□□□ -1.64
CD44-212	ENST00000524922	SPIRE2	Q8WWL2	714 aa		4.83	□□□□□ -1.64
CD44-212	ENST00000524922	JUND	P17535	347 aa		4.82	□□□□□ -1.64
CD44-212	ENST00000524922	SMCP	P49901	116 aa	Predicted RBP	4.82	□□□□□ -1.64
CD44-212	ENST00000524922	PARP9	Q8IXQ6	854 aa		4.82	□□□□□ -1.64
CD44-212	ENST00000524922	MOXD2P	A6NHM9	499 aa		4.81	□□□□□ -1.64
CD44-212	ENST00000524922	NDUFV2	P19404	249 aa		4.81	□□□□□ -1.64
CD44-212	ENST00000524922	GIGYF2	Q6Y7W6	1299 aa	Known RBP	4.81	□□□□□ -1.64
CD44-212	ENST00000524922	RETREG3	Q86VR2	466 aa		4.81	□□□□□ -1.64
CD44-212	ENST00000524922	MRGPRX2	Q96LB1	330 aa		4.81	□□□□□ -1.64
CD44-212	ENST00000524922	TRIM66	O15016	1216 aa		4.8	□□□□□ -1.64
CD44-212	ENST00000524922	SIAH2	O43255	324 aa		4.8	□□□□□ -1.64
CD44-212	ENST00000524922	FDX1	P10109	184 aa		4.8	□□□□□ -1.64
CD44-212	ENST00000524922	MS4A1	P11836	297 aa		4.8	□□□□□ -1.64
CD44-212	ENST00000524922		J3QL48	77 aa		4.79	□□□□□ -1.64
CD44-212	ENST00000524922	SNIP1	Q8TAD8	396 aa	Known RBP	4.79	□□□□□ -1.64
CD44-212	ENST00000524922	GJA5	P36382	358 aa		4.78	□□□□□ -1.64
CD44-212	ENST00000524922	WNT7B	P56706	349 aa		4.78	□□□□□ -1.64
CD44-212	ENST00000524922	CTC1	Q2NKJ3	1217 aa		4.78	□□□□□ -1.64
CD44-212	ENST00000524922	LCE2C	Q5TA81	110 aa		4.78	□□□□□ -1.64
CD44-212	ENST00000524922	RC3H1	Q5TC82	1133 aa	Known RBP	4.78	□□□□□ -1.64
CD44-212	ENST00000524922	NUTM1	Q86Y26	1132 aa		4.78	□□□□□ -1.64
CD44-212	ENST00000524922	CYP4X1	Q8N118	509 aa		4.78	□□□□□ -1.64
CD44-212	ENST00000524922	ZBTB24	O43167	697 aa	Predicted RBP	4.77	□□□□□ -1.65
CD44-212	ENST00000524922	DESI1	Q6ICB0	168 aa		4.77	□□□□□ -1.65
CD44-212	ENST00000524922	RSBN1L	Q6PCB5	846 aa	Predicted RBP	4.77	□□□□□ -1.65
CD44-212	ENST00000524922	KRI1	Q8N9T8	703 aa	Known RBP	4.77	□□□□□ -1.65
CD44-212	ENST00000524922	HPS1	Q92902	700 aa		4.77	□□□□□ -1.65
CD44-212	ENST00000524922	NUDT12	Q9BQG2	462 aa		4.77	□□□□□ -1.65
CD44-212	ENST00000524922	BEGAIN	Q9BUH8	593 aa		4.77	□□□□□ -1.65
CD44-212	ENST00000524922	GMPR2	Q9P2T1	348 aa	Known RBP	4.77	□□□□□ -1.65
CD44-212	ENST00000524922	PCDHB15	Q9Y5E8	787 aa		4.77	□□□□□ -1.65
CD44-212	ENST00000524922	AXIN1	O15169	862 aa		4.76	□□□□□ -1.65
CD44-212	ENST00000524922	SPTLC1	O15269	473 aa		4.76	□□□□□ -1.65
CD44-212	ENST00000524922	SH3BP2	P78314	561 aa		4.76	□□□□□ -1.65
CD44-212	ENST00000524922	TTLL12	Q14166	644 aa	Predicted RBP	4.76	□□□□□ -1.65
CD44-212	ENST00000524922	PTPRN	Q16849	979 aa		4.76	□□□□□ -1.65
CD44-212	ENST00000524922	CCDC24	Q8N4L8	307 aa		4.76	□□□□□ -1.65
CD44-212	ENST00000524922	TBC1D2	Q9BYX2	928 aa		4.76	□□□□□ -1.65
CD44-212	ENST00000524922	EVA1B	Q9NVM1	165 aa		4.76	□□□□□ -1.65
CD44-212	ENST00000524922	TTC24	A2A3L6	582 aa	Predicted RBP	4.75	□□□□□ -1.65
CD44-212	ENST00000524922	CFAP99	D6REC4	459 aa		4.75	□□□□□ -1.65
CD44-212	ENST00000524922	CCNYL3	P0C7X3	344 aa		4.75	□□□□□ -1.65
CD44-212	ENST00000524922	PRR7	Q8TB68	274 aa		4.75	□□□□□ -1.65
CD44-212	ENST00000524922	C6orf229	H3BNL8	230 aa		4.74	□□□□□ -1.65
CD44-212	ENST00000524922	F12	P00748	615 aa	Predicted RBP	4.74	□□□□□ -1.65
CD44-212	ENST00000524922	MTMR2	Q13614	643 aa		4.74	□□□□□ -1.65
CD44-212	ENST00000524922	AK7	Q96M32	723 aa		4.74	□□□□□ -1.65
CD44-212	ENST00000524922	UNC93B1	Q9H1C4	597 aa		4.74	□□□□□ -1.65
CD44-212	ENST00000524922	ATP13A2	Q9NQ11	1180 aa		4.74	□□□□□ -1.65
CD44-212	ENST00000524922	SPDYE5	A6NIY4	337 aa		4.73	□□□□□ -1.65
CD44-212	ENST00000524922	SNRPB	P14678	240 aa	Known RBP	4.73	□□□□□ -1.65
CD44-212	ENST00000524922	HRC	P23327	699 aa		4.73	□□□□□ -1.65
CD44-212	ENST00000524922	PDE4D	Q08499	809 aa		4.73	□□□□□ -1.65
CD44-212	ENST00000524922	KCNH2	Q12809	1159 aa		4.73	□□□□□ -1.65
CD44-212	ENST00000524922	NFX1	Q12986	1120 aa	Known RBP	4.73	□□□□□ -1.65
CD44-212	ENST00000524922	LYPD8	Q6UX82	237 aa		4.73	□□□□□ -1.65
CD44-212	ENST00000524922	TREML4	Q6UXN2	200 aa		4.73	□□□□□ -1.65
CD44-212	ENST00000524922	LIMD1	Q9UGP4	676 aa		4.73	□□□□□ -1.65
CD44-212	ENST00000524922	TUSC1	Q2TAM9	212 aa		4.72	□□□□□ -1.65
CD44-212	ENST00000524922	MYSM1	Q5VVJ2	828 aa		4.72	□□□□□ -1.65
CD44-212	ENST00000524922	CABLES1	Q8TDN4	633 aa		4.72	□□□□□ -1.65
CD44-212	ENST00000524922	TRIM47	Q96LD4	638 aa		4.72	□□□□□ -1.65
CD44-212	ENST00000524922	KLF16	Q9BXK1	252 aa	Predicted RBP	4.72	□□□□□ -1.65
CD44-212	ENST00000524922	PER1	O15534	1290 aa	Predicted RBP	4.71	□□□□□ -1.66
CD44-212	ENST00000524922	QPCT	Q16769	361 aa		4.71	□□□□□ -1.66
CD44-212	ENST00000524922	PRPF38B	Q5VTL8	546 aa	Known RBP	4.71	□□□□□ -1.66
CD44-212	ENST00000524922	FBXO31	Q5XUX0	539 aa	Predicted RBP	4.71	□□□□□ -1.66
CD44-212	ENST00000524922	TRIM46	Q7Z4K8	759 aa		4.71	□□□□□ -1.66
CD44-212	ENST00000524922	RIC3	Q7Z5B4	369 aa		4.71	□□□□□ -1.66

Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms