RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 HRCP23327 699 aa21.71■■□□□ 1.07
NKX3-1-202ENST00000523261 PSDA5PKW4 1024 aaPredicted RBP21.7■■□□□ 1.06
NKX3-1-202ENST00000523261 UNC5CLQ8IV45 518 aa21.68■■□□□ 1.06
NKX3-1-202ENST00000523261 SLIT2O94813 1529 aa21.68■■□□□ 1.06
NKX3-1-202ENST00000523261 PXDNQ92626 1479 aa21.67■■□□□ 1.06
NKX3-1-202ENST00000523261 ROBO2Q9HCK4 1378 aa21.65■■□□□ 1.06
NKX3-1-202ENST00000523261 NPHP3Q7Z494 1330 aa21.65■■□□□ 1.06
NKX3-1-202ENST00000523261 ZNF326Q5BKZ1 582 aaKnown RBP21.64■■□□□ 1.05
NKX3-1-202ENST00000523261 SEPT12Q8IYM1 358 aa21.64■■□□□ 1.05
NKX3-1-202ENST00000523261 NEXMIFQ5QGS0 1516 aa21.62■■□□□ 1.05
NKX3-1-202ENST00000523261 FAM50AQ14320 339 aaKnown RBP21.6■■□□□ 1.05
NKX3-1-202ENST00000523261 PRAG1Q86YV5 1406 aa21.6■■□□□ 1.05
NKX3-1-202ENST00000523261 BAG6P46379 1132 aa21.59■■□□□ 1.05
NKX3-1-202ENST00000523261 XPCQ01831 940 aaPredicted RBP21.59■■□□□ 1.05
NKX3-1-202ENST00000523261 APLP2Q06481 763 aa21.58■■□□□ 1.05
NKX3-1-202ENST00000523261 ESCO1Q5FWF5 840 aa21.58■■□□□ 1.05
NKX3-1-202ENST00000523261 NUP155O75694 1391 aa21.58■■□□□ 1.04
NKX3-1-202ENST00000523261 FOXO3O43524 673 aa21.57■■□□□ 1.04
NKX3-1-202ENST00000523261 ONECUT3O60422 494 aaPredicted RBP21.57■■□□□ 1.04
NKX3-1-202ENST00000523261 KRT27Q7Z3Y8 459 aa21.57■■□□□ 1.04
NKX3-1-202ENST00000523261 HFM1A2PYH4 1435 aa21.55■■□□□ 1.04
NKX3-1-202ENST00000523261 USP32Q8NFA0 1604 aa21.55■■□□□ 1.04
NKX3-1-202ENST00000523261 YY1P25490 414 aa21.55■■□□□ 1.04
NKX3-1-202ENST00000523261 VPS72Q15906 364 aa21.55■■□□□ 1.04
NKX3-1-202ENST00000523261 CDC42BPGQ6DT37 1551 aa21.55■■□□□ 1.04
NKX3-1-202ENST00000523261 R3HDM1Q15032 1099 aaKnown RBP21.53■■□□□ 1.04
NKX3-1-202ENST00000523261 LRPPRCP42704 1394 aaKnown RBP21.51■■□□□ 1.03
NKX3-1-202ENST00000523261 SPATA31A3Q5VYP0 1347 aa21.51■■□□□ 1.03
NKX3-1-202ENST00000523261 EN1Q05925 392 aaPredicted RBP21.5■■□□□ 1.03
NKX3-1-202ENST00000523261 CLTCL1P53675 1640 aa21.5■■□□□ 1.03
NKX3-1-202ENST00000523261 ROCK1Q13464 1354 aa21.49■■□□□ 1.03
NKX3-1-202ENST00000523261 LOC105371045A0A1W2PR82 267 aa21.49■■□□□ 1.03
NKX3-1-202ENST00000523261 NWD2Q9ULI1 1742 aa21.49■■□□□ 1.03
NKX3-1-202ENST00000523261 PLCH1Q4KWH8 1693 aa21.48■■□□□ 1.03
NKX3-1-202ENST00000523261 CCDC9Q9Y3X0 531 aaKnown RBP21.47■■□□□ 1.03
NKX3-1-202ENST00000523261 RGPD1P0DJD0 1748 aa21.46■■□□□ 1.03
NKX3-1-202ENST00000523261 DISP2A7MBM2 1401 aa21.45■■□□□ 1.02
NKX3-1-202ENST00000523261 NAIPQ13075 1403 aa21.45■■□□□ 1.02
NKX3-1-202ENST00000523261 VGFO15240 615 aaPredicted RBP21.44■■□□□ 1.02
NKX3-1-202ENST00000523261 KIF1BO60333 1816 aa21.43■■□□□ 1.02
NKX3-1-202ENST00000523261 NUTM2FA1L443 756 aa21.42■■□□□ 1.02
NKX3-1-202ENST00000523261 CCDC144AA2RUR9 1427 aa21.42■■□□□ 1.02
NKX3-1-202ENST00000523261 A0A0G2JS52 829 aa21.41■■□□□ 1.02
NKX3-1-202ENST00000523261 MYT1Q01538 1121 aa21.41■■□□□ 1.02
NKX3-1-202ENST00000523261 CABLES1Q8TDN4 633 aa21.41■■□□□ 1.02
NKX3-1-202ENST00000523261 TNS1Q9HBL0 1735 aaKnown RBP21.41■■□□□ 1.02
NKX3-1-202ENST00000523261 HAP1P54257 671 aaPredicted RBP21.4■■□□□ 1.02
NKX3-1-202ENST00000523261 KIF1AQ12756 1690 aa21.4■■□□□ 1.02
NKX3-1-202ENST00000523261 ABCA3Q99758 1704 aa21.39■■□□□ 1.01
NKX3-1-202ENST00000523261 FAM98CQ17RN3 349 aaKnown RBP21.39■■□□□ 1.01
NKX3-1-202ENST00000523261 KRT28Q7Z3Y7 464 aa21.39■■□□□ 1.01
NKX3-1-202ENST00000523261 TNS3Q68CZ2 1445 aa21.38■■□□□ 1.01
NKX3-1-202ENST00000523261 EZH2Q15910 746 aaKnown RBP21.38■■□□□ 1.01
NKX3-1-202ENST00000523261 FAM182BQ5T319 152 aa21.37■■□□□ 1.01
NKX3-1-202ENST00000523261 NRAPQ86VF7 1730 aa21.37■■□□□ 1.01
NKX3-1-202ENST00000523261 FMN2Q9NZ56 1722 aa21.36■■□□□ 1.01
NKX3-1-202ENST00000523261 FAM83GA6ND36 823 aa21.34■■□□□ 1.01
NKX3-1-202ENST00000523261 WAPLQ7Z5K2 1190 aa21.34■■□□□ 1.01
NKX3-1-202ENST00000523261 CAMKK2Q96RR4 588 aa21.34■■□□□ 1.01
NKX3-1-202ENST00000523261 TECPR2O15040 1411 aa21.33■■□□□ 1.01
NKX3-1-202ENST00000523261 PLEKHG5O94827 1062 aa21.33■■□□□ 1.01
NKX3-1-202ENST00000523261 RPGRIP1LQ68CZ1 1315 aa21.32■■□□□ 1
NKX3-1-202ENST00000523261 PPLO60437 1756 aa21.32■■□□□ 1
NKX3-1-202ENST00000523261 ADGRB2O60241 1585 aa21.31■■□□□ 1
NKX3-1-202ENST00000523261 SBNO1A3KN83 1393 aa21.3■■□□□ 1
NKX3-1-202ENST00000523261 THSD7AQ9UPZ6 1657 aa21.3■■□□□ 1
NKX3-1-202ENST00000523261 PLEKHH1Q9ULM0 1364 aa21.29■■□□□ 1
NKX3-1-202ENST00000523261 PSME1Q06323 249 aa21.29■■□□□ 1
NKX3-1-202ENST00000523261 ARHGEF10O15013 1369 aa21.28■■□□□ 1
NKX3-1-202ENST00000523261 BTG4Q9NY30 223 aa21.28■■□□□ 1
NKX3-1-202ENST00000523261 STK26Q9P289 416 aa21.28■■□□□ 1
NKX3-1-202ENST00000523261 PARD3Q8TEW0 1356 aa21.27■■□□□ 1
NKX3-1-202ENST00000523261 PHF8Q9UPP1 1060 aa21.27■■□□□ 1
NKX3-1-202ENST00000523261 RGPD8O14715 1765 aaPredicted RBP21.27■■□□□ 1
NKX3-1-202ENST00000523261 RREB1Q92766 1687 aa21.26■□□□□ 0.99
NKX3-1-202ENST00000523261 LMOD2Q6P5Q4 547 aa21.26■□□□□ 0.99
NKX3-1-202ENST00000523261 SPATA31A5Q5VU36 1347 aa21.26■□□□□ 0.99
NKX3-1-202ENST00000523261 SPATA31A7Q8IWB4 1347 aa21.26■□□□□ 0.99
NKX3-1-202ENST00000523261 ABCC11Q96J66 1382 aa21.25■□□□□ 0.99
NKX3-1-202ENST00000523261 NINLQ9Y2I6 1382 aa21.25■□□□□ 0.99
NKX3-1-202ENST00000523261 DCAF8L1A6NGE4 600 aa21.25■□□□□ 0.99
NKX3-1-202ENST00000523261 TRIM37O94972 964 aa21.25■□□□□ 0.99
NKX3-1-202ENST00000523261 KNDC1Q76NI1 1749 aa21.24■□□□□ 0.99
NKX3-1-202ENST00000523261 COL14A1Q05707 1796 aaKnown RBP21.24■□□□□ 0.99
NKX3-1-202ENST00000523261 IFFO2Q5TF58 517 aa21.24■□□□□ 0.99
NKX3-1-202ENST00000523261 NRXN1Q9ULB1 1477 aa21.24■□□□□ 0.99
NKX3-1-202ENST00000523261 NUP188Q5SRE5 1749 aa21.24■□□□□ 0.99
NKX3-1-202ENST00000523261 ITGAEP38570 1179 aa21.23■□□□□ 0.99
NKX3-1-202ENST00000523261 PPP1R1BQ9UD71 204 aaPredicted RBP21.23■□□□□ 0.99
NKX3-1-202ENST00000523261 IFT172Q9UG01 1749 aa21.22■□□□□ 0.99
NKX3-1-202ENST00000523261 APBA3O96018 575 aa21.22■□□□□ 0.99
NKX3-1-202ENST00000523261 CAMTA1Q9Y6Y1 1673 aa21.21■□□□□ 0.99
NKX3-1-202ENST00000523261 FAM196AQ6ZSG2 479 aa21.21■□□□□ 0.99
NKX3-1-202ENST00000523261 SPON1Q9HCB6 807 aa21.21■□□□□ 0.99
NKX3-1-202ENST00000523261 ADGRF5Q8IZF2 1346 aa21.2■□□□□ 0.98
NKX3-1-202ENST00000523261 ZNF784Q8NCA9 323 aaPredicted RBP21.19■□□□□ 0.98
NKX3-1-202ENST00000523261 KCNQ2O43526 872 aa21.18■□□□□ 0.98
NKX3-1-202ENST00000523261 NBPF8Q3BBV2 869 aa21.18■□□□□ 0.98
NKX3-1-202ENST00000523261 NBPF14Q5TI25 921 aa21.18■□□□□ 0.98
NKX3-1-202ENST00000523261 TMEM132EQ6IEE7 984 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms