RNA–Protein interactions for RNA: ENST00000520846.1

MSR1-211, Transcript of macrophage scavenger receptor 1, human

TSL 4

Gene MSR1, Length 373 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSR1-211	ENST00000520846	GGCX	P38435	758 aa		11.21	□□□□□ -0.61
MSR1-211	ENST00000520846	PPP1R18	Q6NYC8	613 aa		11.21	□□□□□ -0.61
MSR1-211	ENST00000520846	IL27	Q8NEV9	243 aa		11.2	□□□□□ -0.62
MSR1-211	ENST00000520846	SLC6A16	Q9GZN6	736 aa		11.2	□□□□□ -0.62
MSR1-211	ENST00000520846	S1PR4	O95977	384 aa		11.19	□□□□□ -0.62
MSR1-211	ENST00000520846	FAM160A2	Q8N612	972 aa	Predicted RBP	11.19	□□□□□ -0.62
MSR1-211	ENST00000520846	SYMPK	Q92797	1274 aa	Known RBP	11.19	□□□□□ -0.62
MSR1-211	ENST00000520846	USB1	Q9BQ65	265 aa	Known RBP	11.19	□□□□□ -0.62
MSR1-211	ENST00000520846	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	11.19	□□□□□ -0.62
MSR1-211	ENST00000520846	C6orf229	H3BNL8	230 aa		11.18	□□□□□ -0.62
MSR1-211	ENST00000520846	POLR3E	Q9NVU0	708 aa		11.18	□□□□□ -0.62
MSR1-211	ENST00000520846	PCDHB15	Q9Y5E8	787 aa		11.18	□□□□□ -0.62
MSR1-211	ENST00000520846	MSS51	Q4VC12	460 aa		11.17	□□□□□ -0.62
MSR1-211	ENST00000520846	LIMD1	Q9UGP4	676 aa		11.17	□□□□□ -0.62
MSR1-211	ENST00000520846	CLK2	P49760	499 aa	Known RBP	11.16	□□□□□ -0.62
MSR1-211	ENST00000520846	SKIV2L	Q15477	1246 aa	Known RBP	11.16	□□□□□ -0.62
MSR1-211	ENST00000520846	SH3D19	Q5HYK7	790 aa		11.16	□□□□□ -0.62
MSR1-211	ENST00000520846	RETREG3	Q86VR2	466 aa		11.16	□□□□□ -0.62
MSR1-211	ENST00000520846	RNF223	E7ERA6	249 aa		11.15	□□□□□ -0.62
MSR1-211	ENST00000520846	MTMR2	Q13614	643 aa		11.15	□□□□□ -0.62
MSR1-211	ENST00000520846	CSPP1	Q1MSJ5	1256 aa		11.15	□□□□□ -0.62
MSR1-211	ENST00000520846	TUSC1	Q2TAM9	212 aa		11.15	□□□□□ -0.62
MSR1-211	ENST00000520846	SPDYE5	A6NIY4	337 aa		11.14	□□□□□ -0.63
MSR1-211	ENST00000520846	PRDM9	Q9NQV7	894 aa		11.14	□□□□□ -0.63
MSR1-211	ENST00000520846	PRPF38B	Q5VTL8	546 aa	Known RBP	11.13	□□□□□ -0.63
MSR1-211	ENST00000520846	ZBTB3	Q9H5J0	574 aa		11.13	□□□□□ -0.63
MSR1-211	ENST00000520846	PPEF1	O14829	653 aa	Predicted RBP	11.12	□□□□□ -0.63
MSR1-211	ENST00000520846	HRC	P23327	699 aa		11.12	□□□□□ -0.63
MSR1-211	ENST00000520846	ANKLE1	Q8NAG6	615 aa		11.11	□□□□□ -0.63
MSR1-211	ENST00000520846	CABLES1	Q8TDN4	633 aa		11.11	□□□□□ -0.63
MSR1-211	ENST00000520846	GOPC	Q9HD26	462 aa		11.11	□□□□□ -0.63
MSR1-211	ENST00000520846	ATP1B4	Q9UN42	357 aa	Predicted RBP	11.11	□□□□□ -0.63
MSR1-211	ENST00000520846	NUTM2B	A6NNL0	878 aa	Predicted RBP	11.1	□□□□□ -0.63
MSR1-211	ENST00000520846	NUTM2E	B1AL46	878 aa	Predicted RBP	11.1	□□□□□ -0.63
MSR1-211	ENST00000520846	RGS20	O76081	388 aa		11.1	□□□□□ -0.63
MSR1-211	ENST00000520846	MMP16	P51512	607 aa		11.1	□□□□□ -0.63
MSR1-211	ENST00000520846	QPCT	Q16769	361 aa		11.1	□□□□□ -0.63
MSR1-211	ENST00000520846	NUTM2D	Q5VT03	806 aa	Predicted RBP	11.1	□□□□□ -0.63
MSR1-211	ENST00000520846	NUTM2A	Q8IVF1	878 aa	Predicted RBP	11.1	□□□□□ -0.63
MSR1-211	ENST00000520846	PROCA1	Q8NCQ7	364 aa	Predicted RBP	11.1	□□□□□ -0.63
MSR1-211	ENST00000520846	PRR7	Q8TB68	274 aa		11.1	□□□□□ -0.63
MSR1-211	ENST00000520846	LILRB3	O75022	631 aa		11.09	□□□□□ -0.63
MSR1-211	ENST00000520846	DXO	O77932	396 aa	Known RBP	11.09	□□□□□ -0.63
MSR1-211	ENST00000520846	JUND	P17535	347 aa		11.08	□□□□□ -0.64
MSR1-211	ENST00000520846	FCF1	Q9Y324	198 aa	Known RBP	11.07	□□□□□ -0.64
MSR1-211	ENST00000520846	PCMTD1	Q96MG8	357 aa	Predicted RBP	11.06	□□□□□ -0.64
MSR1-211	ENST00000520846	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	11.06	□□□□□ -0.64
MSR1-211	ENST00000520846	CFAP99	D6REC4	459 aa		11.05	□□□□□ -0.64
MSR1-211	ENST00000520846	RTL5	Q5HYW3	569 aa	Predicted RBP	11.05	□□□□□ -0.64
MSR1-211	ENST00000520846	DESI1	Q6ICB0	168 aa		11.05	□□□□□ -0.64
MSR1-211	ENST00000520846	PRKD2	Q9BZL6	878 aa		11.04	□□□□□ -0.64
MSR1-211	ENST00000520846	PLA2G2C	Q5R387	149 aa		11.02	□□□□□ -0.65
MSR1-211	ENST00000520846	TSC1	Q92574	1164 aa		11.02	□□□□□ -0.65
MSR1-211	ENST00000520846		V9GY48	417 aa	Predicted RBP	11.02	□□□□□ -0.65
MSR1-211	ENST00000520846	SLC19A1	P41440	591 aa		11.01	□□□□□ -0.65
MSR1-211	ENST00000520846	PPP2R2D	Q66LE6	453 aa		11.01	□□□□□ -0.65
MSR1-211	ENST00000520846	CCDC24	Q8N4L8	307 aa		11.01	□□□□□ -0.65
MSR1-211	ENST00000520846	NUDT12	Q9BQG2	462 aa		11.01	□□□□□ -0.65
MSR1-211	ENST00000520846	PTPRN	Q16849	979 aa		11	□□□□□ -0.65
MSR1-211	ENST00000520846	EMID1	Q96A84	441 aa	Predicted RBP	11	□□□□□ -0.65
MSR1-211	ENST00000520846	FBXO31	Q5XUX0	539 aa	Predicted RBP	10.99	□□□□□ -0.65
MSR1-211	ENST00000520846	LYPD8	Q6UX82	237 aa		10.99	□□□□□ -0.65
MSR1-211	ENST00000520846	LIAT1	Q6ZQX7	453 aa		10.99	□□□□□ -0.65
MSR1-211	ENST00000520846	HELB	Q8NG08	1087 aa	Predicted RBP	10.99	□□□□□ -0.65
MSR1-211	ENST00000520846	CCNYL3	P0C7X3	344 aa		10.98	□□□□□ -0.65
MSR1-211	ENST00000520846	ZBTB24	O43167	697 aa	Predicted RBP	10.97	□□□□□ -0.65
MSR1-211	ENST00000520846	RPIA	P49247	311 aa		10.97	□□□□□ -0.65
MSR1-211	ENST00000520846	PER1	O15534	1290 aa	Predicted RBP	10.95	□□□□□ -0.66
MSR1-211	ENST00000520846	RFC5	P40937	340 aa		10.95	□□□□□ -0.66
MSR1-211	ENST00000520846	EVA1B	Q9NVM1	165 aa		10.95	□□□□□ -0.66
MSR1-211	ENST00000520846	CD2BP2	O95400	341 aa	Known RBP	10.94	□□□□□ -0.66
MSR1-211	ENST00000520846	SPRYD7	Q5W111	196 aa		10.94	□□□□□ -0.66
MSR1-211	ENST00000520846	CTDSPL2	Q05D32	466 aa		10.93	□□□□□ -0.66
MSR1-211	ENST00000520846	PTCRA	Q6ISU1	281 aa	Predicted RBP	10.93	□□□□□ -0.66
MSR1-211	ENST00000520846	AP1G2	O75843	785 aa		10.92	□□□□□ -0.66
MSR1-211	ENST00000520846	CTH	P32929	405 aa		10.92	□□□□□ -0.66
MSR1-211	ENST00000520846	KCNH2	Q12809	1159 aa		10.92	□□□□□ -0.66
MSR1-211	ENST00000520846	TRIM32	Q13049	653 aa		10.91	□□□□□ -0.66
MSR1-211	ENST00000520846	ZNF598	Q86UK7	904 aa	Known RBP	10.91	□□□□□ -0.66
MSR1-211	ENST00000520846	TMEM259	Q4ZIN3	620 aa		10.9	□□□□□ -0.66
MSR1-211	ENST00000520846	ZNF697	Q5TEC3	545 aa		10.9	□□□□□ -0.66
MSR1-211	ENST00000520846	F12	P00748	615 aa	Predicted RBP	10.89	□□□□□ -0.67
MSR1-211	ENST00000520846	UNC93B1	Q9H1C4	597 aa		10.89	□□□□□ -0.67
MSR1-211	ENST00000520846	MAP10	Q9P2G4	905 aa		10.89	□□□□□ -0.67
MSR1-211	ENST00000520846	LRRN4	Q8WUT4	740 aa		10.87	□□□□□ -0.67
MSR1-211	ENST00000520846	USP17L8	P0C7I0	530 aa		10.86	□□□□□ -0.67
MSR1-211	ENST00000520846	TMEM132A	Q24JP5	1023 aa		10.86	□□□□□ -0.67
MSR1-211	ENST00000520846	WNT7B	P56706	349 aa		10.83	□□□□□ -0.68
MSR1-211	ENST00000520846	BAP1	Q92560	729 aa		10.83	□□□□□ -0.68
MSR1-211	ENST00000520846	FOXC1	Q12948	553 aa		10.82	□□□□□ -0.68
MSR1-211	ENST00000520846	TRIM67	Q6ZTA4	783 aa		10.82	□□□□□ -0.68
MSR1-211	ENST00000520846	BANK1	Q8NDB2	785 aa		10.82	□□□□□ -0.68
MSR1-211	ENST00000520846	IRX2	Q9BZI1	471 aa	Predicted RBP	10.82	□□□□□ -0.68
MSR1-211	ENST00000520846	PDZRN3	Q9UPQ7	1066 aa		10.82	□□□□□ -0.68
MSR1-211	ENST00000520846	SKOR1	P84550	965 aa		10.81	□□□□□ -0.68
MSR1-211	ENST00000520846	LINC01559	Q495D7	138 aa		10.81	□□□□□ -0.68
MSR1-211	ENST00000520846	ARMC2	Q8NEN0	867 aa		10.81	□□□□□ -0.68
MSR1-211	ENST00000520846	PKD2L1	Q9P0L9	805 aa		10.81	□□□□□ -0.68
MSR1-211	ENST00000520846	WNT7A	O00755	349 aa		10.8	□□□□□ -0.68
MSR1-211	ENST00000520846	GDF9	O60383	454 aa		10.8	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms