RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 RFC5P40937 340 aa13.55□□□□□ -0.24
SDCBP-208ENST00000520228 RTL5Q5HYW3 569 aaPredicted RBP13.55□□□□□ -0.24
SDCBP-208ENST00000520228 SCUBE3Q8IX30 993 aa13.55□□□□□ -0.24
SDCBP-208ENST00000520228 ATP1B4Q9UN42 357 aaPredicted RBP13.55□□□□□ -0.24
SDCBP-208ENST00000520228 SALL2Q9Y467 1007 aaPredicted RBP13.55□□□□□ -0.24
SDCBP-208ENST00000520228 MTMR2Q13614 643 aa13.54□□□□□ -0.24
SDCBP-208ENST00000520228 THAP11Q96EK4 314 aa13.53□□□□□ -0.24
SDCBP-208ENST00000520228 NR1I2O75469 434 aa13.52□□□□□ -0.25
SDCBP-208ENST00000520228 Q3C1V9 767 aa13.52□□□□□ -0.25
SDCBP-208ENST00000520228 BRICD5Q6PL45 260 aa13.52□□□□□ -0.25
SDCBP-208ENST00000520228 SYMPKQ92797 1274 aaKnown RBP13.52□□□□□ -0.25
SDCBP-208ENST00000520228 SPDYE5A6NIY4 337 aa13.51□□□□□ -0.25
SDCBP-208ENST00000520228 RNF19BQ6ZMZ0 732 aa13.51□□□□□ -0.25
SDCBP-208ENST00000520228 HCSTQ9UBK5 93 aa13.51□□□□□ -0.25
SDCBP-208ENST00000520228 MMRN1Q13201 1228 aa13.5□□□□□ -0.25
SDCBP-208ENST00000520228 TJAP1Q5JTD0 557 aa13.5□□□□□ -0.25
SDCBP-208ENST00000520228 NUTM2BA6NNL0 878 aaPredicted RBP13.49□□□□□ -0.25
SDCBP-208ENST00000520228 NUTM2EB1AL46 878 aaPredicted RBP13.49□□□□□ -0.25
SDCBP-208ENST00000520228 C6orf229H3BNL8 230 aa13.49□□□□□ -0.25
SDCBP-208ENST00000520228 COPS2P61201 443 aa13.49□□□□□ -0.25
SDCBP-208ENST00000520228 NUTM2DQ5VT03 806 aaPredicted RBP13.49□□□□□ -0.25
SDCBP-208ENST00000520228 NUTM2AQ8IVF1 878 aaPredicted RBP13.49□□□□□ -0.25
SDCBP-208ENST00000520228 MTRQ99707 1265 aa13.49□□□□□ -0.25
SDCBP-208ENST00000520228 CFAP99D6REC4 459 aa13.47□□□□□ -0.25
SDCBP-208ENST00000520228 TMEM259Q4ZIN3 620 aa13.47□□□□□ -0.25
SDCBP-208ENST00000520228 RETREG3Q86VR2 466 aa13.47□□□□□ -0.25
SDCBP-208ENST00000520228 BANK1Q8NDB2 785 aa13.46□□□□□ -0.25
SDCBP-208ENST00000520228 ZPR1O75312 459 aa13.45□□□□□ -0.26
SDCBP-208ENST00000520228 FMNL1O95466 1100 aaPredicted RBP13.45□□□□□ -0.26
SDCBP-208ENST00000520228 IL21Q9HBE4 155 aa13.45□□□□□ -0.26
SDCBP-208ENST00000520228 PRR7Q8TB68 274 aa13.44□□□□□ -0.26
SDCBP-208ENST00000520228 USB1Q9BQ65 265 aaKnown RBP13.44□□□□□ -0.26
SDCBP-208ENST00000520228 ZNF516Q92618 1163 aa13.43□□□□□ -0.26
SDCBP-208ENST00000520228 FLIIQ13045 1269 aa13.42□□□□□ -0.26
SDCBP-208ENST00000520228 MCM6Q14566 821 aa13.41□□□□□ -0.26
SDCBP-208ENST00000520228 DESI1Q6ICB0 168 aa13.41□□□□□ -0.26
SDCBP-208ENST00000520228 TLL1O43897 1013 aa13.4□□□□□ -0.26
SDCBP-208ENST00000520228 AP1G2O75843 785 aa13.4□□□□□ -0.26
SDCBP-208ENST00000520228 FAM160A2Q8N612 972 aaPredicted RBP13.4□□□□□ -0.26
SDCBP-208ENST00000520228 SPSB2Q99619 263 aa13.4□□□□□ -0.26
SDCBP-208ENST00000520228 ITGBL1O95965 494 aaPredicted RBP13.39□□□□□ -0.27
SDCBP-208ENST00000520228 MSS51Q4VC12 460 aa13.39□□□□□ -0.27
SDCBP-208ENST00000520228 RB1CC1Q8TDY2 1594 aa13.39□□□□□ -0.27
SDCBP-208ENST00000520228 NACADO15069 1562 aa13.38□□□□□ -0.27
SDCBP-208ENST00000520228 ADH1BP00325 375 aa13.38□□□□□ -0.27
SDCBP-208ENST00000520228 CTDSPL2Q05D32 466 aa13.38□□□□□ -0.27
SDCBP-208ENST00000520228 SNRKQ9NRH2 765 aa13.38□□□□□ -0.27
SDCBP-208ENST00000520228 TIMELESSQ9UNS1 1208 aa13.38□□□□□ -0.27
SDCBP-208ENST00000520228 SOCS7O14512 581 aa13.37□□□□□ -0.27
SDCBP-208ENST00000520228 USP17L8P0C7I0 530 aa13.37□□□□□ -0.27
SDCBP-208ENST00000520228 HELBQ8NG08 1087 aaPredicted RBP13.36□□□□□ -0.27
SDCBP-208ENST00000520228 ERICH6Q7L0X2 663 aa13.35□□□□□ -0.27
SDCBP-208ENST00000520228 MTMR14Q8NCE2 650 aa13.35□□□□□ -0.27
SDCBP-208ENST00000520228 NKX2-3Q8TAU0 364 aa13.34□□□□□ -0.27
SDCBP-208ENST00000520228 PER1O15534 1290 aaPredicted RBP13.33□□□□□ -0.28
SDCBP-208ENST00000520228 DXOO77932 396 aaKnown RBP13.33□□□□□ -0.28
SDCBP-208ENST00000520228 JUNDP17535 347 aa13.33□□□□□ -0.28
SDCBP-208ENST00000520228 MMP16P51512 607 aa13.33□□□□□ -0.28
SDCBP-208ENST00000520228 LYPD8Q6UX82 237 aa13.33□□□□□ -0.28
SDCBP-208ENST00000520228 ZCCHC6Q5VYS8 1495 aaKnown RBP13.33□□□□□ -0.28
SDCBP-208ENST00000520228 C14orf37Q86TY3 774 aa13.32□□□□□ -0.28
SDCBP-208ENST00000520228 TSC1Q92574 1164 aa13.32□□□□□ -0.28
SDCBP-208ENST00000520228 PRDM9Q9NQV7 894 aa13.32□□□□□ -0.28
SDCBP-208ENST00000520228 KCNC4Q03721 635 aa13.31□□□□□ -0.28
SDCBP-208ENST00000520228 LRRN4Q8WUT4 740 aa13.31□□□□□ -0.28
SDCBP-208ENST00000520228 MYO15BQ96JP2 1530 aa13.3□□□□□ -0.28
SDCBP-208ENST00000520228 HMX1Q9NP08 348 aaPredicted RBP13.3□□□□□ -0.28
SDCBP-208ENST00000520228 GJD4Q96KN9 370 aaPredicted RBP13.29□□□□□ -0.28
SDCBP-208ENST00000520228 SLC6A16Q9GZN6 736 aa13.28□□□□□ -0.28
SDCBP-208ENST00000520228 PTPRNQ16849 979 aa13.27□□□□□ -0.29
SDCBP-208ENST00000520228 TRIM34Q9BYJ4 488 aa13.26□□□□□ -0.29
SDCBP-208ENST00000520228 F12P00748 615 aaPredicted RBP13.25□□□□□ -0.29
SDCBP-208ENST00000520228 DCAF1Q9Y4B6 1507 aa13.24□□□□□ -0.29
SDCBP-208ENST00000520228 S1PR4O95977 384 aa13.24□□□□□ -0.29
SDCBP-208ENST00000520228 UBTFP17480 764 aaKnown RBP13.24□□□□□ -0.29
SDCBP-208ENST00000520228 IFFO2Q5TF58 517 aa13.23□□□□□ -0.29
SDCBP-208ENST00000520228 ZMYND15Q9H091 742 aa13.23□□□□□ -0.29
SDCBP-208ENST00000520228 EPS8L1Q8TE68 723 aa13.22□□□□□ -0.29
SDCBP-208ENST00000520228 POM121Q96HA1 1249 aa13.22□□□□□ -0.29
SDCBP-208ENST00000520228 EVA1BQ9NVM1 165 aa13.22□□□□□ -0.29
SDCBP-208ENST00000520228 COG6Q9Y2V7 657 aa13.22□□□□□ -0.29
SDCBP-208ENST00000520228 CCNYL3P0C7X3 344 aa13.21□□□□□ -0.29
SDCBP-208ENST00000520228 CLUAP1Q96AJ1 413 aa13.21□□□□□ -0.29
SDCBP-208ENST00000520228 NUDT12Q9BQG2 462 aa13.21□□□□□ -0.29
SDCBP-208ENST00000520228 A6NJR5 290 aa13.2□□□□□ -0.3
SDCBP-208ENST00000520228 APBB1O00213 710 aa13.2□□□□□ -0.3
SDCBP-208ENST00000520228 GPR37L1O60883 481 aa13.2□□□□□ -0.3
SDCBP-208ENST00000520228 NR6A1Q15406 480 aa13.2□□□□□ -0.3
SDCBP-208ENST00000520228 MAP10Q9P2G4 905 aa13.18□□□□□ -0.3
SDCBP-208ENST00000520228 KCNH2Q12809 1159 aa13.17□□□□□ -0.3
SDCBP-208ENST00000520228 TBC1D2BQ9UPU7 963 aa13.17□□□□□ -0.3
SDCBP-208ENST00000520228 GDPD2Q9HCC8 539 aa13.16□□□□□ -0.3
SDCBP-208ENST00000520228 NDUFB9Q9Y6M9 179 aa13.16□□□□□ -0.3
SDCBP-208ENST00000520228 RNF223E7ERA6 249 aa13.15□□□□□ -0.3
SDCBP-208ENST00000520228 FNBP4Q8N3X1 1017 aaPredicted RBP13.15□□□□□ -0.3
SDCBP-208ENST00000520228 FCF1Q9Y324 198 aaKnown RBP13.15□□□□□ -0.3
SDCBP-208ENST00000520228 PPEF1O14829 653 aaPredicted RBP13.14□□□□□ -0.31
SDCBP-208ENST00000520228 PTCRAQ6ISU1 281 aaPredicted RBP13.14□□□□□ -0.31
SDCBP-208ENST00000520228 PPP1R18Q6NYC8 613 aa13.14□□□□□ -0.31
SDCBP-208ENST00000520228 RAD21O60216 631 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms