RNA–Protein interactions for RNA: ENST00000519485.1

CSMD3-209, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 3

Gene CSMD3, Length 452 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-209ENST00000519485 NLRP7Q8WX94 980 aa8.59□□□□□ -1.03
CSMD3-209ENST00000519485 DACH1Q9UI36 760 aa8.59□□□□□ -1.03
CSMD3-209ENST00000519485 CD46P15529 392 aa8.58□□□□□ -1.04
CSMD3-209ENST00000519485 GPIHBP1Q8IV16 184 aa8.58□□□□□ -1.04
CSMD3-209ENST00000519485 GMPR2Q9P2T1 348 aaKnown RBP8.58□□□□□ -1.04
CSMD3-209ENST00000519485 PLCB2Q00722 1185 aa8.57□□□□□ -1.04
CSMD3-209ENST00000519485 TRIM32Q13049 653 aa8.57□□□□□ -1.04
CSMD3-209ENST00000519485 SNIP1Q8TAD8 396 aaKnown RBP8.57□□□□□ -1.04
CSMD3-209ENST00000519485 TTC24A2A3L6 582 aaPredicted RBP8.56□□□□□ -1.04
CSMD3-209ENST00000519485 DXOO77932 396 aaKnown RBP8.56□□□□□ -1.04
CSMD3-209ENST00000519485 SMPD1P17405 629 aa8.56□□□□□ -1.04
CSMD3-209ENST00000519485 C11orf95C9JLR9 678 aaPredicted RBP8.55□□□□□ -1.04
CSMD3-209ENST00000519485 USP46P62068 366 aa8.54□□□□□ -1.04
CSMD3-209ENST00000519485 MAP2K5Q13163 448 aa8.54□□□□□ -1.04
CSMD3-209ENST00000519485 USB1Q9BQ65 265 aaKnown RBP8.54□□□□□ -1.04
CSMD3-209ENST00000519485 REPIN1Q9BWE0 567 aaKnown RBP8.54□□□□□ -1.04
CSMD3-209ENST00000519485 WIPF1O43516 503 aa8.53□□□□□ -1.04
CSMD3-209ENST00000519485 KDM4AO75164 1064 aa8.53□□□□□ -1.04
CSMD3-209ENST00000519485 WFS1O76024 890 aa8.53□□□□□ -1.04
CSMD3-209ENST00000519485 NFX1Q12986 1120 aaKnown RBP8.53□□□□□ -1.04
CSMD3-209ENST00000519485 MRGPRX2Q96LB1 330 aa8.52□□□□□ -1.05
CSMD3-209ENST00000519485 WNT7BP56706 349 aa8.51□□□□□ -1.05
CSMD3-209ENST00000519485 ATP13A2Q9NQ11 1180 aa8.51□□□□□ -1.05
CSMD3-209ENST00000519485 SENP2Q9HC62 589 aa8.5□□□□□ -1.05
CSMD3-209ENST00000519485 IRF6O14896 467 aa8.49□□□□□ -1.05
CSMD3-209ENST00000519485 TRIM47Q96LD4 638 aa8.49□□□□□ -1.05
CSMD3-209ENST00000519485 J3QL48 77 aa8.48□□□□□ -1.05
CSMD3-209ENST00000519485 HOXA2O43364 376 aa8.48□□□□□ -1.05
CSMD3-209ENST00000519485 STK17AQ9UEE5 414 aa8.48□□□□□ -1.05
CSMD3-209ENST00000519485 MINK1Q8N4C8 1332 aaPredicted RBP8.48□□□□□ -1.05
CSMD3-209ENST00000519485 SKOR1P84550 965 aa8.46□□□□□ -1.06
CSMD3-209ENST00000519485 KIFC2Q96AC6 838 aa8.46□□□□□ -1.06
CSMD3-209ENST00000519485 JUNDP17535 347 aa8.45□□□□□ -1.06
CSMD3-209ENST00000519485 INSM1Q01101 510 aaPredicted RBP8.45□□□□□ -1.06
CSMD3-209ENST00000519485 RC3H1Q5TC82 1133 aaKnown RBP8.45□□□□□ -1.06
CSMD3-209ENST00000519485 HPS1Q92902 700 aa8.45□□□□□ -1.06
CSMD3-209ENST00000519485 TERTO14746 1132 aaKnown RBP8.44□□□□□ -1.06
CSMD3-209ENST00000519485 SNRPBP14678 240 aaKnown RBP8.44□□□□□ -1.06
CSMD3-209ENST00000519485 MDM2Q00987 491 aaPredicted RBP8.44□□□□□ -1.06
CSMD3-209ENST00000519485 HLA-CQ95604 372 aa8.44□□□□□ -1.06
CSMD3-209ENST00000519485 GPCPD1Q9NPB8 672 aa8.43□□□□□ -1.06
CSMD3-209ENST00000519485 TULP1O00294 542 aaPredicted RBP8.42□□□□□ -1.06
CSMD3-209ENST00000519485 LCE2CQ5TA81 110 aa8.42□□□□□ -1.06
CSMD3-209ENST00000519485 CCDC24Q8N4L8 307 aa8.42□□□□□ -1.06
CSMD3-209ENST00000519485 CLCN1P35523 988 aa8.41□□□□□ -1.06
CSMD3-209ENST00000519485 RETREG3Q86VR2 466 aa8.41□□□□□ -1.06
CSMD3-209ENST00000519485 FAM217BQ9NTX9 383 aaPredicted RBP8.41□□□□□ -1.06
CSMD3-209ENST00000519485 SIAH2O43255 324 aa8.4□□□□□ -1.06
CSMD3-209ENST00000519485 CCDC102AQ96A19 550 aa8.4□□□□□ -1.06
CSMD3-209ENST00000519485 KDM2AQ9Y2K7 1162 aa8.4□□□□□ -1.06
CSMD3-209ENST00000519485 NUDT12Q9BQG2 462 aa8.38□□□□□ -1.07
CSMD3-209ENST00000519485 ALDH1A1P00352 501 aa8.37□□□□□ -1.07
CSMD3-209ENST00000519485 GUCA2AQ02747 115 aa8.37□□□□□ -1.07
CSMD3-209ENST00000519485 PTCRAQ6ISU1 281 aaPredicted RBP8.37□□□□□ -1.07
CSMD3-209ENST00000519485 NPAS3Q8IXF0 933 aa8.37□□□□□ -1.07
CSMD3-209ENST00000519485 NUTM1Q86Y26 1132 aa8.36□□□□□ -1.07
CSMD3-209ENST00000519485 SYMPKQ92797 1274 aaKnown RBP8.36□□□□□ -1.07
CSMD3-209ENST00000519485 CCNYL3P0C7X3 344 aa8.34□□□□□ -1.07
CSMD3-209ENST00000519485 HAP1P54257 671 aaPredicted RBP8.34□□□□□ -1.07
CSMD3-209ENST00000519485 PTPRNQ16849 979 aa8.34□□□□□ -1.07
CSMD3-209ENST00000519485 MPNDQ8N594 471 aa8.34□□□□□ -1.07
CSMD3-209ENST00000519485 EHBP1Q8NDI1 1231 aa8.34□□□□□ -1.07
CSMD3-209ENST00000519485 NXF1Q9UBU9 619 aaKnown RBP8.34□□□□□ -1.07
CSMD3-209ENST00000519485 PCDHGC3Q9UN70 934 aa8.34□□□□□ -1.07
CSMD3-209ENST00000519485 FDX1P10109 184 aa8.33□□□□□ -1.08
CSMD3-209ENST00000519485 MS4A1P11836 297 aa8.33□□□□□ -1.08
CSMD3-209ENST00000519485 SH3BP2P78314 561 aa8.33□□□□□ -1.08
CSMD3-209ENST00000519485 SLC16A10Q8TF71 515 aa8.33□□□□□ -1.08
CSMD3-209ENST00000519485 DESI1Q6ICB0 168 aa8.32□□□□□ -1.08
CSMD3-209ENST00000519485 TRIM46Q7Z4K8 759 aa8.32□□□□□ -1.08
CSMD3-209ENST00000519485 EVA1BQ9NVM1 165 aa8.32□□□□□ -1.08
CSMD3-209ENST00000519485 WASF2Q9Y6W5 498 aa8.32□□□□□ -1.08
CSMD3-209ENST00000519485 CAPN5O15484 640 aaPredicted RBP8.31□□□□□ -1.08
CSMD3-209ENST00000519485 C6orf229H3BNL8 230 aa8.3□□□□□ -1.08
CSMD3-209ENST00000519485 UNC93B1Q9H1C4 597 aa8.3□□□□□ -1.08
CSMD3-209ENST00000519485 SPDYE5A6NIY4 337 aa8.29□□□□□ -1.08
CSMD3-209ENST00000519485 VSIG10Q8N0Z9 540 aa8.29□□□□□ -1.08
CSMD3-209ENST00000519485 KRI1Q8N9T8 703 aaKnown RBP8.29□□□□□ -1.08
CSMD3-209ENST00000519485 SPIRE2Q8WWL2 714 aa8.29□□□□□ -1.08
CSMD3-209ENST00000519485 IRF7Q92985 503 aa8.29□□□□□ -1.08
CSMD3-209ENST00000519485 H3BM21 787 aa8.28□□□□□ -1.08
CSMD3-209ENST00000519485 BMP1P13497 986 aa8.28□□□□□ -1.08
CSMD3-209ENST00000519485 VARSP26640 1264 aaKnown RBP8.28□□□□□ -1.08
CSMD3-209ENST00000519485 SSTR3P32745 418 aaPredicted RBP8.28□□□□□ -1.08
CSMD3-209ENST00000519485 GJA5P36382 358 aa8.28□□□□□ -1.08
CSMD3-209ENST00000519485 KCNH2Q12809 1159 aa8.28□□□□□ -1.08
CSMD3-209ENST00000519485 PLEKHG3A1L390 1219 aa8.27□□□□□ -1.09
CSMD3-209ENST00000519485 FAM181BA6NEQ2 426 aa8.27□□□□□ -1.09
CSMD3-209ENST00000519485 LORP23490 312 aaPredicted RBP8.27□□□□□ -1.09
CSMD3-209ENST00000519485 ZNF511Q8NB15 262 aa8.27□□□□□ -1.09
CSMD3-209ENST00000519485 AMHR2Q16671 573 aa8.26□□□□□ -1.09
CSMD3-209ENST00000519485 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.26□□□□□ -1.09
CSMD3-209ENST00000519485 GMPRP36959 345 aa8.25□□□□□ -1.09
CSMD3-209ENST00000519485 MTMR2Q13614 643 aa8.25□□□□□ -1.09
CSMD3-209ENST00000519485 PRR7Q8TB68 274 aa8.25□□□□□ -1.09
CSMD3-209ENST00000519485 MOXD2PA6NHM9 499 aa8.24□□□□□ -1.09
CSMD3-209ENST00000519485 BAP1Q92560 729 aa8.24□□□□□ -1.09
CSMD3-209ENST00000519485 NDUFV2P19404 249 aa8.23□□□□□ -1.09
CSMD3-209ENST00000519485 ZSCAN1Q8NBB4 408 aa8.23□□□□□ -1.09
CSMD3-209ENST00000519485 ZFP42Q96MM3 310 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms