RNA–Protein interactions for RNA: ENST00000518604.1

SQLE-202, Transcript of squalene epoxidase, humanhuman

TSL 2

Gene SQLE, Length 743 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQLE-202ENST00000518604 APLP1P51693 650 aa9.15□□□□□ -0.94
SQLE-202ENST00000518604 MTMR2Q13614 643 aa9.15□□□□□ -0.94
SQLE-202ENST00000518604 QPCTQ16769 361 aa9.15□□□□□ -0.94
SQLE-202ENST00000518604 KCTD12Q96CX2 325 aaKnown RBP9.15□□□□□ -0.94
SQLE-202ENST00000518604 WBP1LQ9NX94 342 aa9.15□□□□□ -0.94
SQLE-202ENST00000518604 SALL2Q9Y467 1007 aaPredicted RBP9.15□□□□□ -0.94
SQLE-202ENST00000518604 PCDHB3Q9Y5E6 796 aa9.14□□□□□ -0.95
SQLE-202ENST00000518604 NR1I2O75469 434 aa9.13□□□□□ -0.95
SQLE-202ENST00000518604 GUCA2AQ02747 115 aa9.13□□□□□ -0.95
SQLE-202ENST00000518604 HLA-CQ95604 372 aa9.13□□□□□ -0.95
SQLE-202ENST00000518604 SOCS7O14512 581 aa9.12□□□□□ -0.95
SQLE-202ENST00000518604 RTL5Q5HYW3 569 aaPredicted RBP9.12□□□□□ -0.95
SQLE-202ENST00000518604 CABLES1Q8TDN4 633 aa9.12□□□□□ -0.95
SQLE-202ENST00000518604 SLC27A5Q9Y2P5 690 aa9.12□□□□□ -0.95
SQLE-202ENST00000518604 C6orf229H3BNL8 230 aa9.11□□□□□ -0.95
SQLE-202ENST00000518604 PUS10Q3MIT2 529 aaKnown RBP9.11□□□□□ -0.95
SQLE-202ENST00000518604 FBXO31Q5XUX0 539 aaPredicted RBP9.11□□□□□ -0.95
SQLE-202ENST00000518604 MCM6Q14566 821 aa9.1□□□□□ -0.95
SQLE-202ENST00000518604 RETREG3Q86VR2 466 aa9.1□□□□□ -0.95
SQLE-202ENST00000518604 SCUBE3Q8IX30 993 aa9.1□□□□□ -0.95
SQLE-202ENST00000518604 ZMYND15Q9H091 742 aa9.1□□□□□ -0.95
SQLE-202ENST00000518604 APBB1O00213 710 aa9.08□□□□□ -0.96
SQLE-202ENST00000518604 AP1G2O75843 785 aa9.08□□□□□ -0.96
SQLE-202ENST00000518604 BRICD5Q6PL45 260 aa9.08□□□□□ -0.96
SQLE-202ENST00000518604 HELBQ8NG08 1087 aaPredicted RBP9.08□□□□□ -0.96
SQLE-202ENST00000518604 FMNL1O95466 1100 aaPredicted RBP9.07□□□□□ -0.96
SQLE-202ENST00000518604 DESI1Q6ICB0 168 aa9.07□□□□□ -0.96
SQLE-202ENST00000518604 UBTFP17480 764 aaKnown RBP9.06□□□□□ -0.96
SQLE-202ENST00000518604 PTPN5P54829 565 aa9.06□□□□□ -0.96
SQLE-202ENST00000518604 BLOC1S3Q6QNY0 202 aa9.06□□□□□ -0.96
SQLE-202ENST00000518604 PRR7Q8TB68 274 aa9.06□□□□□ -0.96
SQLE-202ENST00000518604 THAP11Q96EK4 314 aa9.06□□□□□ -0.96
SQLE-202ENST00000518604 USB1Q9BQ65 265 aaKnown RBP9.06□□□□□ -0.96
SQLE-202ENST00000518604 CFAP99D6REC4 459 aa9.05□□□□□ -0.96
SQLE-202ENST00000518604 SYMPKQ92797 1274 aaKnown RBP9.05□□□□□ -0.96
SQLE-202ENST00000518604 A6NJR5 290 aa9.04□□□□□ -0.96
SQLE-202ENST00000518604 USP17L8P0C7I0 530 aa9.04□□□□□ -0.96
SQLE-202ENST00000518604 RNF19BQ6ZMZ0 732 aa9.04□□□□□ -0.96
SQLE-202ENST00000518604 PRM3Q9NNZ6 103 aa9.04□□□□□ -0.96
SQLE-202ENST00000518604 SNRKQ9NRH2 765 aa9.04□□□□□ -0.96
SQLE-202ENST00000518604 RAD21O60216 631 aa9.03□□□□□ -0.96
SQLE-202ENST00000518604 HCSTQ9UBK5 93 aa9.03□□□□□ -0.96
SQLE-202ENST00000518604 CTDSPL2Q05D32 466 aa9.02□□□□□ -0.97
SQLE-202ENST00000518604 MTMR14Q8NCE2 650 aa9.02□□□□□ -0.97
SQLE-202ENST00000518604 IL21Q9HBE4 155 aa9.02□□□□□ -0.97
SQLE-202ENST00000518604 ZPR1O75312 459 aa9.01□□□□□ -0.97
SQLE-202ENST00000518604 COPS2P61201 443 aa9.01□□□□□ -0.97
SQLE-202ENST00000518604 MSS51Q4VC12 460 aa9.01□□□□□ -0.97
SQLE-202ENST00000518604 TSC1Q92574 1164 aa9.01□□□□□ -0.97
SQLE-202ENST00000518604 SPSB2Q99619 263 aa9.01□□□□□ -0.97
SQLE-202ENST00000518604 MTRQ99707 1265 aa9.01□□□□□ -0.97
SQLE-202ENST00000518604 TJAP1Q5JTD0 557 aa9□□□□□ -0.97
SQLE-202ENST00000518604 PLA2G2EQ9NZK7 142 aa9□□□□□ -0.97
SQLE-202ENST00000518604 LYPD8Q6UX82 237 aa8.99□□□□□ -0.97
SQLE-202ENST00000518604 JUNDP17535 347 aa8.98□□□□□ -0.97
SQLE-202ENST00000518604 ADH1BP00325 375 aa8.97□□□□□ -0.97
SQLE-202ENST00000518604 COG6Q9Y2V7 657 aa8.97□□□□□ -0.97
SQLE-202ENST00000518604 MMP16P51512 607 aa8.96□□□□□ -0.98
SQLE-202ENST00000518604 PTPRNQ16849 979 aa8.96□□□□□ -0.98
SQLE-202ENST00000518604 WWC1Q8IX03 1113 aa8.96□□□□□ -0.98
SQLE-202ENST00000518604 FAM160A2Q8N612 972 aaPredicted RBP8.96□□□□□ -0.98
SQLE-202ENST00000518604 LRRN4Q8WUT4 740 aa8.96□□□□□ -0.98
SQLE-202ENST00000518604 CLUAP1Q96AJ1 413 aa8.96□□□□□ -0.98
SQLE-202ENST00000518604 GJD4Q96KN9 370 aaPredicted RBP8.96□□□□□ -0.98
SQLE-202ENST00000518604 NDUFB9Q9Y6M9 179 aa8.96□□□□□ -0.98
SQLE-202ENST00000518604 DXOO77932 396 aaKnown RBP8.95□□□□□ -0.98
SQLE-202ENST00000518604 PER1O15534 1290 aaPredicted RBP8.94□□□□□ -0.98
SQLE-202ENST00000518604 TRAK2O60296 914 aa8.94□□□□□ -0.98
SQLE-202ENST00000518604 PROSER2Q86WR7 435 aaPredicted RBP8.94□□□□□ -0.98
SQLE-202ENST00000518604 PNMA1Q8ND90 353 aa8.94□□□□□ -0.98
SQLE-202ENST00000518604 ZNF516Q92618 1163 aa8.94□□□□□ -0.98
SQLE-202ENST00000518604 TRIM34Q9BYJ4 488 aa8.94□□□□□ -0.98
SQLE-202ENST00000518604 HMX1Q9NP08 348 aaPredicted RBP8.94□□□□□ -0.98
SQLE-202ENST00000518604 FNBP4Q8N3X1 1017 aaPredicted RBP8.93□□□□□ -0.98
SQLE-202ENST00000518604 POM121Q96HA1 1249 aa8.93□□□□□ -0.98
SQLE-202ENST00000518604 ITGBL1O95965 494 aaPredicted RBP8.92□□□□□ -0.98
SQLE-202ENST00000518604 KCNC4Q03721 635 aa8.92□□□□□ -0.98
SQLE-202ENST00000518604 SLC6A16Q9GZN6 736 aa8.92□□□□□ -0.98
SQLE-202ENST00000518604 GDPD2Q9HCC8 539 aa8.92□□□□□ -0.98
SQLE-202ENST00000518604 TLL1O43897 1013 aa8.91□□□□□ -0.98
SQLE-202ENST00000518604 EVA1BQ9NVM1 165 aa8.91□□□□□ -0.98
SQLE-202ENST00000518604 TBC1D2BQ9UPU7 963 aa8.91□□□□□ -0.98
SQLE-202ENST00000518604 F12P00748 615 aaPredicted RBP8.9□□□□□ -0.98
SQLE-202ENST00000518604 CCNYL3P0C7X3 344 aa8.9□□□□□ -0.98
SQLE-202ENST00000518604 NUDT12Q9BQG2 462 aa8.9□□□□□ -0.98
SQLE-202ENST00000518604 SUPT5HO00267 1087 aaKnown RBP8.89□□□□□ -0.99
SQLE-202ENST00000518604 ABL2P42684 1182 aa8.89□□□□□ -0.99
SQLE-202ENST00000518604 NR6A1Q15406 480 aa8.89□□□□□ -0.99
SQLE-202ENST00000518604 WASHC4Q2M389 1173 aa8.89□□□□□ -0.99
SQLE-202ENST00000518604 ZC3H4Q9UPT8 1303 aaKnown RBP8.88□□□□□ -0.99
SQLE-202ENST00000518604 KCNH2Q12809 1159 aa8.88□□□□□ -0.99
SQLE-202ENST00000518604 ARMC2Q8NEN0 867 aa8.88□□□□□ -0.99
SQLE-202ENST00000518604 NKX2-3Q8TAU0 364 aa8.87□□□□□ -0.99
SQLE-202ENST00000518604 PRDM9Q9NQV7 894 aa8.87□□□□□ -0.99
SQLE-202ENST00000518604 ZNF330Q9Y3S2 320 aaPredicted RBP8.87□□□□□ -0.99
SQLE-202ENST00000518604 CTHP32929 405 aa8.86□□□□□ -0.99
SQLE-202ENST00000518604 EPS8L1Q8TE68 723 aa8.86□□□□□ -0.99
SQLE-202ENST00000518604 GPKOWQ92917 476 aaPredicted RBP eCLIP8.86□□□□□ -0.994e-11■■□□□ 11.8
SQLE-202ENST00000518604 FKBPLQ9UIM3 349 aa8.86□□□□□ -0.99
SQLE-202ENST00000518604 GGCXP38435 758 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms