RNA–Protein interactions for RNA: ENST00000517490.5

CPNE3-203, Transcript of copine 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPNE3, Length 4,865 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-203ENST00000517490 KDM6BO15054 1643 aa8.24□□□□□ -1.09
CPNE3-203ENST00000517490 CLCN1P35523 988 aa8.24□□□□□ -1.09
CPNE3-203ENST00000517490 LNPKQ9C0E8 428 aa8.24□□□□□ -1.09
CPNE3-203ENST00000517490 ADGRL2O95490 1459 aa8.24□□□□□ -1.09
CPNE3-203ENST00000517490 NUP160Q12769 1436 aa8.24□□□□□ -1.09
CPNE3-203ENST00000517490 RARSP54136 660 aaKnown RBP8.24□□□□□ -1.09
CPNE3-203ENST00000517490 NUP153P49790 1475 aaKnown RBP8.24□□□□□ -1.09
CPNE3-203ENST00000517490 EVC2Q86UK5 1308 aa8.24□□□□□ -1.09
CPNE3-203ENST00000517490 TMEM132AQ24JP5 1023 aa8.24□□□□□ -1.09
CPNE3-203ENST00000517490 ARHGAP5Q13017 1502 aa8.23□□□□□ -1.09
CPNE3-203ENST00000517490 MTERF4Q7Z6M4 381 aaKnown RBP8.23□□□□□ -1.09
CPNE3-203ENST00000517490 RAPGEF6Q8TEU7 1601 aa8.23□□□□□ -1.09
CPNE3-203ENST00000517490 COL17A1Q9UMD9 1497 aaPredicted RBP8.23□□□□□ -1.09
CPNE3-203ENST00000517490 PLEKHH1Q9ULM0 1364 aa8.23□□□□□ -1.09
CPNE3-203ENST00000517490 KDM5CP41229 1560 aa8.23□□□□□ -1.09
CPNE3-203ENST00000517490 MTHFSP49914 203 aa8.23□□□□□ -1.09
CPNE3-203ENST00000517490 OSCARQ8IYS5 282 aa8.23□□□□□ -1.09
CPNE3-203ENST00000517490 LMOD3Q0VAK6 560 aa8.22□□□□□ -1.09
CPNE3-203ENST00000517490 TESK2Q96S53 571 aa8.22□□□□□ -1.09
CPNE3-203ENST00000517490 PLB1Q6P1J6 1458 aa8.22□□□□□ -1.09
CPNE3-203ENST00000517490 CDC45O75419 566 aa8.22□□□□□ -1.09
CPNE3-203ENST00000517490 XRCC6P12956 609 aaKnown RBP eCLIP8.22□□□□□ -1.09
CPNE3-203ENST00000517490 SAFB2Q14151 953 aaKnown RBP eCLIP8.22□□□□□ -1.09
CPNE3-203ENST00000517490 SHANK2Q9UPX8 1470 aa8.22□□□□□ -1.09
CPNE3-203ENST00000517490 GPRASP1Q5JY77 1395 aa8.22□□□□□ -1.09
CPNE3-203ENST00000517490 HMMRO75330 724 aa8.22□□□□□ -1.09
CPNE3-203ENST00000517490 FAM13BQ9NYF5 915 aa8.21□□□□□ -1.09
CPNE3-203ENST00000517490 RIPK4P57078 832 aa8.21□□□□□ -1.09
CPNE3-203ENST00000517490 PIK3C2GO75747 1445 aa8.21□□□□□ -1.09
CPNE3-203ENST00000517490 MCTP1Q6DN14 999 aa8.21□□□□□ -1.1
CPNE3-203ENST00000517490 GCC1Q96CN9 775 aa8.21□□□□□ -1.1
CPNE3-203ENST00000517490 ASXL1Q8IXJ9 1541 aa8.21□□□□□ -1.1
CPNE3-203ENST00000517490 K7ELQ4 463 aaPredicted RBP8.21□□□□□ -1.1
CPNE3-203ENST00000517490 REC8O95072 547 aa8.21□□□□□ -1.1
CPNE3-203ENST00000517490 EXOSC9Q06265 439 aaKnown RBP8.21□□□□□ -1.1
CPNE3-203ENST00000517490 CFAP70Q5T0N1 1121 aa8.21□□□□□ -1.1
CPNE3-203ENST00000517490 ATF7IPQ6VMQ6 1270 aa8.21□□□□□ -1.1
CPNE3-203ENST00000517490 SCAF11Q99590 1463 aaKnown RBP8.21□□□□□ -1.1
CPNE3-203ENST00000517490 EIF2AK4Q9P2K8 1649 aaKnown RBP8.21□□□□□ -1.1
CPNE3-203ENST00000517490 MBD5Q9P267 1494 aa8.2□□□□□ -1.1
CPNE3-203ENST00000517490 APBB1O00213 710 aa8.2□□□□□ -1.1
CPNE3-203ENST00000517490 RABEP1Q15276 862 aa8.2□□□□□ -1.1
CPNE3-203ENST00000517490 API5Q9BZZ5 524 aaKnown RBP8.2□□□□□ -1.1
CPNE3-203ENST00000517490 DENND4BO75064 1496 aaPredicted RBP8.2□□□□□ -1.1
CPNE3-203ENST00000517490 INTS3Q68E01 1043 aaKnown RBP8.2□□□□□ -1.1
CPNE3-203ENST00000517490 ZSCAN30Q86W11 494 aa8.2□□□□□ -1.1
CPNE3-203ENST00000517490 CCDC39Q9UFE4 941 aa8.2□□□□□ -1.1
CPNE3-203ENST00000517490 R3HCC1Q9Y3T6 440 aaKnown RBP8.2□□□□□ -1.1
CPNE3-203ENST00000517490 TARBP1Q13395 1621 aaKnown RBP8.2□□□□□ -1.1
CPNE3-203ENST00000517490 DIAPH1O60610 1272 aaKnown RBP8.2□□□□□ -1.1
CPNE3-203ENST00000517490 KIAA1211Q6ZU35 1233 aa8.2□□□□□ -1.1
CPNE3-203ENST00000517490 GRIN2AQ12879 1464 aa8.19□□□□□ -1.1
CPNE3-203ENST00000517490 STK26Q9P289 416 aa8.19□□□□□ -1.1
CPNE3-203ENST00000517490 FAM135AQ9P2D6 1515 aa8.19□□□□□ -1.1
CPNE3-203ENST00000517490 PPP4R3CPQ6ZMV5 832 aa8.19□□□□□ -1.1
CPNE3-203ENST00000517490 NOB1Q9ULX3 412 aaKnown RBP8.19□□□□□ -1.1
CPNE3-203ENST00000517490 CHD1LQ86WJ1 897 aa8.19□□□□□ -1.1
CPNE3-203ENST00000517490 GGT6Q6P531 493 aa8.18□□□□□ -1.1
CPNE3-203ENST00000517490 CAVIN1Q6NZI2 390 aaKnown RBP8.18□□□□□ -1.1
CPNE3-203ENST00000517490 CWC22Q9HCG8 908 aaKnown RBP8.18□□□□□ -1.1
CPNE3-203ENST00000517490 RRAGDQ9NQL2 400 aaPredicted RBP8.18□□□□□ -1.1
CPNE3-203ENST00000517490 KIAA0556O60303 1618 aa8.18□□□□□ -1.1
CPNE3-203ENST00000517490 GOLGA6L6A8MZA4 724 aa8.18□□□□□ -1.1
CPNE3-203ENST00000517490 TNPO1Q92973 898 aaKnown RBP8.18□□□□□ -1.1
CPNE3-203ENST00000517490 VGFO15240 615 aaPredicted RBP8.18□□□□□ -1.1
CPNE3-203ENST00000517490 TSR2Q969E8 191 aaKnown RBP8.18□□□□□ -1.1
CPNE3-203ENST00000517490 SEC24BO95487 1268 aa8.17□□□□□ -1.1
CPNE3-203ENST00000517490 MBD3O95983 291 aa8.17□□□□□ -1.1
CPNE3-203ENST00000517490 PDCL3Q9H2J4 239 aa8.17□□□□□ -1.1
CPNE3-203ENST00000517490 ADGBQ8N7X0 1667 aa8.17□□□□□ -1.1
CPNE3-203ENST00000517490 GOLGA6L4A6NEF3 574 aa8.17□□□□□ -1.1
CPNE3-203ENST00000517490 PCDHB15Q9Y5E8 787 aa8.17□□□□□ -1.1
CPNE3-203ENST00000517490 NPC1L1Q9UHC9 1359 aa8.17□□□□□ -1.1
CPNE3-203ENST00000517490 ADAMTS12P58397 1594 aa8.17□□□□□ -1.1
CPNE3-203ENST00000517490 GNAI1P63096 354 aa8.17□□□□□ -1.1
CPNE3-203ENST00000517490 ZMYM3Q14202 1370 aa8.17□□□□□ -1.1
CPNE3-203ENST00000517490 ZNF428Q96B54 188 aa8.17□□□□□ -1.1
CPNE3-203ENST00000517490 NSD3Q9BZ95 1437 aa8.16□□□□□ -1.1
CPNE3-203ENST00000517490 HDAC1Q13547 482 aaPredicted RBP8.16□□□□□ -1.1
CPNE3-203ENST00000517490 PANK2Q9BZ23 570 aa8.16□□□□□ -1.1
CPNE3-203ENST00000517490 SLC12A5Q9H2X9 1139 aa8.16□□□□□ -1.1
CPNE3-203ENST00000517490 PBRM1Q86U86 1689 aa8.16□□□□□ -1.1
CPNE3-203ENST00000517490 FOXD4L5Q5VV16 416 aaPredicted RBP8.16□□□□□ -1.1
CPNE3-203ENST00000517490 FOXD4L4Q8WXT5 416 aaPredicted RBP8.16□□□□□ -1.1
CPNE3-203ENST00000517490 ESF1Q9H501 851 aaKnown RBP8.16□□□□□ -1.1
CPNE3-203ENST00000517490 EIF4G3O43432 1585 aaKnown RBP8.16□□□□□ -1.1
CPNE3-203ENST00000517490 DRC7Q8IY82 874 aa8.16□□□□□ -1.1
CPNE3-203ENST00000517490 SNX21Q969T3 373 aa8.15□□□□□ -1.1
CPNE3-203ENST00000517490 ELL2O00472 640 aaPredicted RBP8.15□□□□□ -1.1
CPNE3-203ENST00000517490 POLR3AO14802 1390 aaPredicted RBP8.15□□□□□ -1.1
CPNE3-203ENST00000517490 ATP6V1DQ9Y5K8 247 aa8.15□□□□□ -1.1
CPNE3-203ENST00000517490 TMEM57Q8N5G2 664 aa8.15□□□□□ -1.11
CPNE3-203ENST00000517490 BCORL1Q5H9F3 1711 aa8.15□□□□□ -1.11
CPNE3-203ENST00000517490 TRIM6-TRIM34B2RNG4 842 aa8.14□□□□□ -1.11
CPNE3-203ENST00000517490 PRPF40AO75400 957 aaKnown RBP8.14□□□□□ -1.11
CPNE3-203ENST00000517490 ZRSR1Q15695 479 aaKnown RBP8.14□□□□□ -1.11
CPNE3-203ENST00000517490 CCDC27Q2M243 656 aa8.14□□□□□ -1.11
CPNE3-203ENST00000517490 ABCC11Q96J66 1382 aa8.14□□□□□ -1.11
CPNE3-203ENST00000517490 A2MP01023 1474 aa8.14□□□□□ -1.11
CPNE3-203ENST00000517490 MCM2P49736 904 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms