RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 CFAP70Q5T0N1 1121 aa20■□□□□ 0.79
TCOF1-215ENST00000515516 SIRT1Q96EB6 747 aa19.99■□□□□ 0.79
TCOF1-215ENST00000515516 TECPR2O15040 1411 aa19.99■□□□□ 0.79
TCOF1-215ENST00000515516 YTHDC2Q9H6S0 1430 aaKnown RBP19.99■□□□□ 0.79
TCOF1-215ENST00000515516 KDM2AQ9Y2K7 1162 aa19.98■□□□□ 0.79
TCOF1-215ENST00000515516 MYOM2P54296 1465 aa19.98■□□□□ 0.79
TCOF1-215ENST00000515516 DCAF11Q8TEB1 546 aa19.97■□□□□ 0.79
TCOF1-215ENST00000515516 LRP6O75581 1613 aa19.97■□□□□ 0.79
TCOF1-215ENST00000515516 STAC3Q96MF2 364 aa19.96■□□□□ 0.79
TCOF1-215ENST00000515516 SHPRHQ149N8 1683 aa19.95■□□□□ 0.78
TCOF1-215ENST00000515516 NUTM2FA1L443 756 aa19.95■□□□□ 0.78
TCOF1-215ENST00000515516 IFT172Q9UG01 1749 aa19.95■□□□□ 0.78
TCOF1-215ENST00000515516 SOS2Q07890 1332 aaPredicted RBP19.95■□□□□ 0.78
TCOF1-215ENST00000515516 NPHP3Q7Z494 1330 aa19.95■□□□□ 0.78
TCOF1-215ENST00000515516 PNPLA6Q8IY17 1366 aa19.95■□□□□ 0.78
TCOF1-215ENST00000515516 PLEKHH1Q9ULM0 1364 aa19.95■□□□□ 0.78
TCOF1-215ENST00000515516 NRXN1Q9ULB1 1477 aa19.94■□□□□ 0.78
TCOF1-215ENST00000515516 POGKQ9P215 609 aa19.94■□□□□ 0.78
TCOF1-215ENST00000515516 NHSL1Q5SYE7 1610 aa19.94■□□□□ 0.78
TCOF1-215ENST00000515516 CDC42BPGQ6DT37 1551 aa19.92■□□□□ 0.78
TCOF1-215ENST00000515516 C8orf37Q96NL8 207 aa19.92■□□□□ 0.78
TCOF1-215ENST00000515516 PRAM1Q96QH2 718 aa19.92■□□□□ 0.78
TCOF1-215ENST00000515516 FOXO3O43524 673 aa19.91■□□□□ 0.78
TCOF1-215ENST00000515516 SAFB2Q14151 953 aaKnown RBP eCLIP19.91■□□□□ 0.78
TCOF1-215ENST00000515516 AFF2P51816 1311 aa19.9■□□□□ 0.78
TCOF1-215ENST00000515516 ADAMTS2O95450 1211 aa19.89■□□□□ 0.77
TCOF1-215ENST00000515516 RXRBP28702 533 aa19.89■□□□□ 0.77
TCOF1-215ENST00000515516 NGLY1Q96IV0 654 aa19.88■□□□□ 0.77
TCOF1-215ENST00000515516 TRAK1Q9UPV9 953 aa19.88■□□□□ 0.77
TCOF1-215ENST00000515516 LAMC1P11047 1609 aa19.87■□□□□ 0.77
TCOF1-215ENST00000515516 XPCQ01831 940 aaPredicted RBP19.87■□□□□ 0.77
TCOF1-215ENST00000515516 KNDC1Q76NI1 1749 aa19.86■□□□□ 0.77
TCOF1-215ENST00000515516 QTRT2Q9H974 415 aaKnown RBP19.84■□□□□ 0.77
TCOF1-215ENST00000515516 PSME1Q06323 249 aa19.83■□□□□ 0.77
TCOF1-215ENST00000515516 PHF8Q9UPP1 1060 aa19.83■□□□□ 0.77
TCOF1-215ENST00000515516 KRT28Q7Z3Y7 464 aa19.82■□□□□ 0.76
TCOF1-215ENST00000515516 DLC1Q96QB1 1528 aa19.81■□□□□ 0.76
TCOF1-215ENST00000515516 PXDNQ92626 1479 aa19.8■□□□□ 0.76
TCOF1-215ENST00000515516 HIRIP3Q9BW71 556 aaPredicted RBP19.8■□□□□ 0.76
TCOF1-215ENST00000515516 USP21Q9UK80 565 aa19.8■□□□□ 0.76
TCOF1-215ENST00000515516 MINK1Q8N4C8 1332 aaPredicted RBP19.79■□□□□ 0.76
TCOF1-215ENST00000515516 RBM6P78332 1123 aaKnown RBP19.79■□□□□ 0.76
TCOF1-215ENST00000515516 EIF3AQ14152 1382 aaKnown RBP19.78■□□□□ 0.76
TCOF1-215ENST00000515516 ADGRB1O14514 1584 aa19.78■□□□□ 0.76
TCOF1-215ENST00000515516 SPATA31A3Q5VYP0 1347 aa19.77■□□□□ 0.76
TCOF1-215ENST00000515516 FMN2Q9NZ56 1722 aa19.76■□□□□ 0.75
TCOF1-215ENST00000515516 HAP1P54257 671 aaPredicted RBP19.76■□□□□ 0.75
TCOF1-215ENST00000515516 LMOD2Q6P5Q4 547 aa19.76■□□□□ 0.75
TCOF1-215ENST00000515516 PMFBP1Q8TBY8 1022 aa19.76■□□□□ 0.75
TCOF1-215ENST00000515516 TRPC5Q9UL62 973 aaPredicted RBP19.76■□□□□ 0.75
TCOF1-215ENST00000515516 ANKARQ7Z5J8 1434 aa19.76■□□□□ 0.75
TCOF1-215ENST00000515516 WASLO00401 505 aaPredicted RBP19.75■□□□□ 0.75
TCOF1-215ENST00000515516 FNBP4Q8N3X1 1017 aaPredicted RBP19.75■□□□□ 0.75
TCOF1-215ENST00000515516 KIF1AQ12756 1690 aa19.74■□□□□ 0.75
TCOF1-215ENST00000515516 CDK12Q9NYV4 1490 aaPredicted RBP19.73■□□□□ 0.75
TCOF1-215ENST00000515516 COL22A1Q8NFW1 1626 aaPredicted RBP19.72■□□□□ 0.75
TCOF1-215ENST00000515516 SBNO1A3KN83 1393 aa19.71■□□□□ 0.75
TCOF1-215ENST00000515516 PLEKHG5O94827 1062 aa19.71■□□□□ 0.75
TCOF1-215ENST00000515516 GPRASP1Q5JY77 1395 aa19.7■□□□□ 0.74
TCOF1-215ENST00000515516 TNS3Q68CZ2 1445 aa19.7■□□□□ 0.74
TCOF1-215ENST00000515516 NGDNQ8NEJ9 315 aaKnown RBP19.7■□□□□ 0.74
TCOF1-215ENST00000515516 ARHGEF10O15013 1369 aa19.7■□□□□ 0.74
TCOF1-215ENST00000515516 NEUROD1Q13562 356 aa19.68■□□□□ 0.74
TCOF1-215ENST00000515516 UPF1Q92900 1129 aaKnown RBP eCLIP19.68■□□□□ 0.74
TCOF1-215ENST00000515516 ADGRB2O60241 1585 aa19.68■□□□□ 0.74
TCOF1-215ENST00000515516 NBPF1Q3BBV0 1214 aa19.67■□□□□ 0.74
TCOF1-215ENST00000515516 PRR36Q9H6K5 1346 aa19.67■□□□□ 0.74
TCOF1-215ENST00000515516 CABLES1Q8TDN4 633 aa19.66■□□□□ 0.74
TCOF1-215ENST00000515516 L3MBTL2Q969R5 705 aa19.66■□□□□ 0.74
TCOF1-215ENST00000515516 NUDT16Q96DE0 195 aaKnown RBP19.66■□□□□ 0.74
TCOF1-215ENST00000515516 CDK19Q9BWU1 502 aa19.66■□□□□ 0.74
TCOF1-215ENST00000515516 TULP4Q9NRJ4 1543 aa19.66■□□□□ 0.74
TCOF1-215ENST00000515516 UNC5CLQ8IV45 518 aa19.65■□□□□ 0.74
TCOF1-215ENST00000515516 SIN3AQ96ST3 1273 aa19.65■□□□□ 0.74
TCOF1-215ENST00000515516 RGS12O14924 1447 aa19.65■□□□□ 0.74
TCOF1-215ENST00000515516 ATRNO75882 1429 aa19.65■□□□□ 0.74
TCOF1-215ENST00000515516 PAK3O75914 559 aaPredicted RBP19.64■□□□□ 0.73
TCOF1-215ENST00000515516 BCL9LQ86UU0 1499 aa19.63■□□□□ 0.73
TCOF1-215ENST00000515516 GJD4Q96KN9 370 aaPredicted RBP19.63■□□□□ 0.73
TCOF1-215ENST00000515516 CENPJQ9HC77 1338 aaPredicted RBP19.61■□□□□ 0.73
TCOF1-215ENST00000515516 CCDC61Q9Y6R9 512 aa19.6■□□□□ 0.73
TCOF1-215ENST00000515516 USP32Q8NFA0 1604 aa19.6■□□□□ 0.73
TCOF1-215ENST00000515516 RGPD8O14715 1765 aaPredicted RBP19.6■□□□□ 0.73
TCOF1-215ENST00000515516 SRPK2P78362 688 aaKnown RBP19.59■□□□□ 0.73
TCOF1-215ENST00000515516 CCDC9Q9Y3X0 531 aaKnown RBP19.59■□□□□ 0.73
TCOF1-215ENST00000515516 KIAA1210Q9ULL0 1709 aa19.59■□□□□ 0.73
TCOF1-215ENST00000515516 ATAD2Q6PL18 1390 aa19.58■□□□□ 0.73
TCOF1-215ENST00000515516 SLIT2O94813 1529 aa19.57■□□□□ 0.72
TCOF1-215ENST00000515516 ARHGEF28Q8N1W1 1705 aaKnown RBP19.57■□□□□ 0.72
TCOF1-215ENST00000515516 ATP7BP35670 1465 aa19.56■□□□□ 0.72
TCOF1-215ENST00000515516 FAM83GA6ND36 823 aa19.56■□□□□ 0.72
TCOF1-215ENST00000515516 PLEKHG3A1L390 1219 aa19.55■□□□□ 0.72
TCOF1-215ENST00000515516 VPS72Q15906 364 aa19.55■□□□□ 0.72
TCOF1-215ENST00000515516 NBPF8Q3BBV2 869 aa19.55■□□□□ 0.72
TCOF1-215ENST00000515516 ACEP12821 1306 aa19.54■□□□□ 0.72
TCOF1-215ENST00000515516 TRIM26Q12899 539 aaPredicted RBP19.54■□□□□ 0.72
TCOF1-215ENST00000515516 ROCK2O75116 1388 aaKnown RBP19.54■□□□□ 0.72
TCOF1-215ENST00000515516 CABP2Q9NPB3 220 aa19.53■□□□□ 0.72
TCOF1-215ENST00000515516 MARF1Q9Y4F3 1742 aaKnown RBP19.52■□□□□ 0.72
TCOF1-215ENST00000515516 BTG4Q9NY30 223 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms