RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 SLFN5Q08AF3 891 aa19.51■□□□□ 0.71
NUP54-217ENST00000514987 TRMT2AQ8IZ69 625 aaKnown RBP19.51■□□□□ 0.71
NUP54-217ENST00000514987 TULP4Q9NRJ4 1543 aa19.51■□□□□ 0.71
NUP54-217ENST00000514987 SLC12A5Q9H2X9 1139 aa19.5■□□□□ 0.71
NUP54-217ENST00000514987 MYO5BQ9ULV0 1848 aa19.49■□□□□ 0.71
NUP54-217ENST00000514987 E9PSI1 815 aa19.49■□□□□ 0.71
NUP54-217ENST00000514987 TCERG1O14776 1098 aaKnown RBP19.49■□□□□ 0.71
NUP54-217ENST00000514987 APAF1O14727 1248 aa19.47■□□□□ 0.71
NUP54-217ENST00000514987 CFAP53Q96M91 514 aa19.47■□□□□ 0.71
NUP54-217ENST00000514987 NCBP3Q53F19 620 aaKnown RBP19.46■□□□□ 0.71
NUP54-217ENST00000514987 NKTRP30414 1462 aaKnown RBP19.46■□□□□ 0.71
NUP54-217ENST00000514987 SHPRHQ149N8 1683 aa19.45■□□□□ 0.7
NUP54-217ENST00000514987 ATAD2Q6PL18 1390 aa19.45■□□□□ 0.7
NUP54-217ENST00000514987 CLTCQ00610 1675 aaKnown RBP19.45■□□□□ 0.7
NUP54-217ENST00000514987 MS4A1P11836 297 aa19.44■□□□□ 0.7
NUP54-217ENST00000514987 CCDC146Q8IYE0 955 aa19.44■□□□□ 0.7
NUP54-217ENST00000514987 CRBNQ96SW2 442 aa19.44■□□□□ 0.7
NUP54-217ENST00000514987 PTPRMP28827 1452 aa19.43■□□□□ 0.7
NUP54-217ENST00000514987 NUTM2DQ5VT03 806 aaPredicted RBP19.43■□□□□ 0.7
NUP54-217ENST00000514987 YTHDC2Q9H6S0 1430 aaKnown RBP19.43■□□□□ 0.7
NUP54-217ENST00000514987 PLIN1O60240 522 aa19.42■□□□□ 0.7
NUP54-217ENST00000514987 ERICH6Q7L0X2 663 aa19.42■□□□□ 0.7
NUP54-217ENST00000514987 RUNDC1Q96C34 613 aa19.42■□□□□ 0.7
NUP54-217ENST00000514987 TSPOAP1O95153 1857 aa19.42■□□□□ 0.7
NUP54-217ENST00000514987 MSH5O43196 834 aa19.41■□□□□ 0.7
NUP54-217ENST00000514987 SPATA31D1Q6ZQQ2 1576 aa19.41■□□□□ 0.7
NUP54-217ENST00000514987 ALKQ9UM73 1620 aa19.41■□□□□ 0.7
NUP54-217ENST00000514987 ABCC11Q96J66 1382 aa19.4■□□□□ 0.7
NUP54-217ENST00000514987 STAG3Q9UJ98 1225 aa19.4■□□□□ 0.7
NUP54-217ENST00000514987 MED14O60244 1454 aa19.39■□□□□ 0.69
NUP54-217ENST00000514987 TERF2IPQ9NYB0 399 aa19.39■□□□□ 0.69
NUP54-217ENST00000514987 DLC1Q96QB1 1528 aa19.38■□□□□ 0.69
NUP54-217ENST00000514987 CABP2Q9NPB3 220 aa19.38■□□□□ 0.69
NUP54-217ENST00000514987 POGKQ9P215 609 aa19.38■□□□□ 0.69
NUP54-217ENST00000514987 ANP32AP39687 249 aaKnown RBP19.37■□□□□ 0.69
NUP54-217ENST00000514987 MTHFSP49914 203 aa19.37■□□□□ 0.69
NUP54-217ENST00000514987 SRPK2P78362 688 aaKnown RBP19.37■□□□□ 0.69
NUP54-217ENST00000514987 STK26Q9P289 416 aa19.37■□□□□ 0.69
NUP54-217ENST00000514987 IQSEC2Q5JU85 1478 aa19.37■□□□□ 0.69
NUP54-217ENST00000514987 ANKRD26Q9UPS8 1709 aa19.37■□□□□ 0.69
NUP54-217ENST00000514987 CCDC27Q2M243 656 aa19.36■□□□□ 0.69
NUP54-217ENST00000514987 FBXO31Q5XUX0 539 aaPredicted RBP19.36■□□□□ 0.69
NUP54-217ENST00000514987 WWC1Q8IX03 1113 aa19.36■□□□□ 0.69
NUP54-217ENST00000514987 ARHGEF40Q8TER5 1519 aa19.36■□□□□ 0.69
NUP54-217ENST00000514987 WDR63Q8IWG1 891 aa19.36■□□□□ 0.69
NUP54-217ENST00000514987 A2ML1A8K2U0 1454 aa19.36■□□□□ 0.69
NUP54-217ENST00000514987 CENPQQ7L2Z9 268 aaPredicted RBP19.35■□□□□ 0.69
NUP54-217ENST00000514987 PRAM1Q96QH2 718 aa19.35■□□□□ 0.69
NUP54-217ENST00000514987 A0A1W2PP64 1363 aa19.34■□□□□ 0.69
NUP54-217ENST00000514987 PHF23Q9BUL5 403 aaPredicted RBP19.34■□□□□ 0.69
NUP54-217ENST00000514987 TNNT2P45379 298 aaPredicted RBP19.33■□□□□ 0.69
NUP54-217ENST00000514987 C20orf194Q5TEA3 1177 aa19.32■□□□□ 0.68
NUP54-217ENST00000514987 HDGFL2Q7Z4V5 671 aaPredicted RBP19.32■□□□□ 0.68
NUP54-217ENST00000514987 RIMS2Q9UQ26 1411 aa19.32■□□□□ 0.68
NUP54-217ENST00000514987 PDE3AQ14432 1141 aa19.32■□□□□ 0.68
NUP54-217ENST00000514987 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.32■□□□□ 0.68
NUP54-217ENST00000514987 SPINK5Q9NQ38 1064 aaPredicted RBP19.32■□□□□ 0.68
NUP54-217ENST00000514987 SAFB2Q14151 953 aaKnown RBP eCLIP19.31■□□□□ 0.68
NUP54-217ENST00000514987 TCP11L2Q8N4U5 519 aa19.31■□□□□ 0.68
NUP54-217ENST00000514987 MINK1Q8N4C8 1332 aaPredicted RBP19.3■□□□□ 0.68
NUP54-217ENST00000514987 KDM2BQ8NHM5 1336 aa19.3■□□□□ 0.68
NUP54-217ENST00000514987 ADGRB2O60241 1585 aa19.29■□□□□ 0.68
NUP54-217ENST00000514987 HDGFP51858 240 aaKnown RBP19.28■□□□□ 0.68
NUP54-217ENST00000514987 AAMPQ13685 434 aa19.28■□□□□ 0.68
NUP54-217ENST00000514987 SETD1AO15047 1707 aaKnown RBP19.28■□□□□ 0.68
NUP54-217ENST00000514987 CD163L1Q9NR16 1453 aa19.28■□□□□ 0.68
NUP54-217ENST00000514987 PDE4AP27815 886 aa19.27■□□□□ 0.68
NUP54-217ENST00000514987 IPO9Q96P70 1041 aaKnown RBP19.27■□□□□ 0.68
NUP54-217ENST00000514987 CDK19Q9BWU1 502 aa19.27■□□□□ 0.68
NUP54-217ENST00000514987 BACH2Q9BYV9 841 aa19.27■□□□□ 0.68
NUP54-217ENST00000514987 KIF13AQ9H1H9 1805 aa19.27■□□□□ 0.68
NUP54-217ENST00000514987 PNNQ9H307 717 aaKnown RBP19.27■□□□□ 0.67
NUP54-217ENST00000514987 ESF1Q9H501 851 aaKnown RBP19.27■□□□□ 0.67
NUP54-217ENST00000514987 MYH16Q9H6N6 1097 aa19.27■□□□□ 0.67
NUP54-217ENST00000514987 NOP58Q9Y2X3 529 aaKnown RBP19.27■□□□□ 0.67
NUP54-217ENST00000514987 ATP7BP35670 1465 aa19.26■□□□□ 0.67
NUP54-217ENST00000514987 KIF20BQ96Q89 1820 aa19.26■□□□□ 0.67
NUP54-217ENST00000514987 U2AF1L5P0DN76 240 aaPredicted RBP19.25■□□□□ 0.67
NUP54-217ENST00000514987 U2AF1Q01081 240 aaKnown RBP eCLIP19.25■□□□□ 0.67
NUP54-217ENST00000514987 NLRP1Q9C000 1473 aa19.25■□□□□ 0.67
NUP54-217ENST00000514987 FYB1O15117 783 aa19.24■□□□□ 0.67
NUP54-217ENST00000514987 DMRT2Q9Y5R5 561 aa19.24■□□□□ 0.67
NUP54-217ENST00000514987 COL3A1P02461 1466 aaPredicted RBP19.24■□□□□ 0.67
NUP54-217ENST00000514987 BCAR3O75815 825 aa19.23■□□□□ 0.67
NUP54-217ENST00000514987 CT47B1P0C2W7 299 aaPredicted RBP19.23■□□□□ 0.67
NUP54-217ENST00000514987 SIRT1Q96EB6 747 aa19.23■□□□□ 0.67
NUP54-217ENST00000514987 GGNBP2Q9H3C7 697 aa19.22■□□□□ 0.67
NUP54-217ENST00000514987 ZMYM3Q14202 1370 aa19.22■□□□□ 0.67
NUP54-217ENST00000514987 KNDC1Q76NI1 1749 aa19.21■□□□□ 0.67
NUP54-217ENST00000514987 CANXP27824 592 aaKnown RBP19.21■□□□□ 0.67
NUP54-217ENST00000514987 NEUROD2Q15784 382 aa19.21■□□□□ 0.67
NUP54-217ENST00000514987 PNPLA6Q8IY17 1366 aa19.2■□□□□ 0.66
NUP54-217ENST00000514987 NRXN3Q9Y4C0 1643 aa19.19■□□□□ 0.66
NUP54-217ENST00000514987 FAM135BQ49AJ0 1406 aa19.19■□□□□ 0.66
NUP54-217ENST00000514987 RARSP54136 660 aaKnown RBP19.19■□□□□ 0.66
NUP54-217ENST00000514987 CABP1Q9NZU7 370 aa19.19■□□□□ 0.66
NUP54-217ENST00000514987 ZBTB47Q9UFB7 747 aaPredicted RBP19.19■□□□□ 0.66
NUP54-217ENST00000514987 RRP7AQ9Y3A4 280 aaKnown RBP19.19■□□□□ 0.66
NUP54-217ENST00000514987 IL16Q14005 1332 aa19.19■□□□□ 0.66
NUP54-217ENST00000514987 MAPK8IP3Q9UPT6 1336 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms