RNA–Protein interactions for RNA: ENST00000514610.1

HMGCS1-207, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-207ENST00000514610 SLC27A5Q9Y2P5 690 aa10.58□□□□□ -0.72
HMGCS1-207ENST00000514610 FLIIQ13045 1269 aa10.57□□□□□ -0.72
HMGCS1-207ENST00000514610 SYMPKQ92797 1274 aaKnown RBP10.57□□□□□ -0.72
HMGCS1-207ENST00000514610 PRR14Q9BWN1 585 aa10.57□□□□□ -0.72
HMGCS1-207ENST00000514610 NUTM2BA6NNL0 878 aaPredicted RBP10.56□□□□□ -0.72
HMGCS1-207ENST00000514610 NUTM2EB1AL46 878 aaPredicted RBP10.56□□□□□ -0.72
HMGCS1-207ENST00000514610 NUTM2DQ5VT03 806 aaPredicted RBP10.56□□□□□ -0.72
HMGCS1-207ENST00000514610 NUTM2AQ8IVF1 878 aaPredicted RBP10.56□□□□□ -0.72
HMGCS1-207ENST00000514610 MTMR2Q13614 643 aa10.55□□□□□ -0.72
HMGCS1-207ENST00000514610 BLOC1S3Q6QNY0 202 aa10.54□□□□□ -0.72
HMGCS1-207ENST00000514610 SNRKQ9NRH2 765 aa10.54□□□□□ -0.72
HMGCS1-207ENST00000514610 PCDHB3Q9Y5E6 796 aa10.54□□□□□ -0.72
HMGCS1-207ENST00000514610 CFAP99D6REC4 459 aa10.53□□□□□ -0.72
HMGCS1-207ENST00000514610 C6orf229H3BNL8 230 aa10.53□□□□□ -0.72
HMGCS1-207ENST00000514610 TMEM259Q4ZIN3 620 aa10.53□□□□□ -0.72
HMGCS1-207ENST00000514610 BANK1Q8NDB2 785 aa10.53□□□□□ -0.72
HMGCS1-207ENST00000514610 HCSTQ9UBK5 93 aa10.53□□□□□ -0.72
HMGCS1-207ENST00000514610 RNF19BQ6ZMZ0 732 aa10.52□□□□□ -0.73
HMGCS1-207ENST00000514610 AP1G2O75843 785 aa10.51□□□□□ -0.73
HMGCS1-207ENST00000514610 PTPN5P54829 565 aa10.51□□□□□ -0.73
HMGCS1-207ENST00000514610 SPDYE5A6NIY4 337 aa10.5□□□□□ -0.73
HMGCS1-207ENST00000514610 SCUBE3Q8IX30 993 aa10.5□□□□□ -0.73
HMGCS1-207ENST00000514610 THAP11Q96EK4 314 aa10.5□□□□□ -0.73
HMGCS1-207ENST00000514610 USP17L8P0C7I0 530 aa10.49□□□□□ -0.73
HMGCS1-207ENST00000514610 Q3C1V9 767 aa10.49□□□□□ -0.73
HMGCS1-207ENST00000514610 BRICD5Q6PL45 260 aa10.49□□□□□ -0.73
HMGCS1-207ENST00000514610 MTMR14Q8NCE2 650 aa10.49□□□□□ -0.73
HMGCS1-207ENST00000514610 ZMYND15Q9H091 742 aa10.49□□□□□ -0.73
HMGCS1-207ENST00000514610 PLA2G2EQ9NZK7 142 aa10.49□□□□□ -0.73
HMGCS1-207ENST00000514610 COPS2P61201 443 aa10.48□□□□□ -0.73
HMGCS1-207ENST00000514610 CTDSPL2Q05D32 466 aa10.48□□□□□ -0.73
HMGCS1-207ENST00000514610 RETREG3Q86VR2 466 aa10.48□□□□□ -0.73
HMGCS1-207ENST00000514610 PRR7Q8TB68 274 aa10.48□□□□□ -0.73
HMGCS1-207ENST00000514610 NR1I2O75469 434 aa10.47□□□□□ -0.73
HMGCS1-207ENST00000514610 CLUAP1Q96AJ1 413 aa10.47□□□□□ -0.73
HMGCS1-207ENST00000514610 POM121Q96HA1 1249 aa10.47□□□□□ -0.73
HMGCS1-207ENST00000514610 SALL2Q9Y467 1007 aaPredicted RBP10.47□□□□□ -0.73
HMGCS1-207ENST00000514610 UBTFP17480 764 aaKnown RBP10.46□□□□□ -0.73
HMGCS1-207ENST00000514610 NYAP1Q6ZVC0 841 aa10.46□□□□□ -0.73
HMGCS1-207ENST00000514610 TSC1Q92574 1164 aa10.45□□□□□ -0.74
HMGCS1-207ENST00000514610 HMX1Q9NP08 348 aaPredicted RBP10.45□□□□□ -0.74
HMGCS1-207ENST00000514610 FMNL1O95466 1100 aaPredicted RBP10.44□□□□□ -0.74
HMGCS1-207ENST00000514610 LRRN4Q8WUT4 740 aa10.44□□□□□ -0.74
HMGCS1-207ENST00000514610 MTRQ99707 1265 aa10.44□□□□□ -0.74
HMGCS1-207ENST00000514610 USB1Q9BQ65 265 aaKnown RBP10.44□□□□□ -0.74
HMGCS1-207ENST00000514610 PER1O15534 1290 aaPredicted RBP10.43□□□□□ -0.74
HMGCS1-207ENST00000514610 TLL1O43897 1013 aa10.43□□□□□ -0.74
HMGCS1-207ENST00000514610 TJAP1Q5JTD0 557 aa10.43□□□□□ -0.74
HMGCS1-207ENST00000514610 HELBQ8NG08 1087 aaPredicted RBP10.43□□□□□ -0.74
HMGCS1-207ENST00000514610 GJD4Q96KN9 370 aaPredicted RBP10.42□□□□□ -0.74
HMGCS1-207ENST00000514610 COG6Q9Y2V7 657 aa10.42□□□□□ -0.74
HMGCS1-207ENST00000514610 SUPT5HO00267 1087 aaKnown RBP10.41□□□□□ -0.74
HMGCS1-207ENST00000514610 SOCS7O14512 581 aa10.41□□□□□ -0.74
HMGCS1-207ENST00000514610 FAM160A2Q8N612 972 aaPredicted RBP10.41□□□□□ -0.74
HMGCS1-207ENST00000514610 ZNF516Q92618 1163 aa10.41□□□□□ -0.74
HMGCS1-207ENST00000514610 A6NJR5 290 aa10.4□□□□□ -0.74
HMGCS1-207ENST00000514610 ZPR1O75312 459 aa10.4□□□□□ -0.74
HMGCS1-207ENST00000514610 DESI1Q6ICB0 168 aa10.4□□□□□ -0.74
HMGCS1-207ENST00000514610 TRIM34Q9BYJ4 488 aa10.4□□□□□ -0.74
HMGCS1-207ENST00000514610 SPSB2Q99619 263 aa10.39□□□□□ -0.75
HMGCS1-207ENST00000514610 PRDM9Q9NQV7 894 aa10.39□□□□□ -0.75
HMGCS1-207ENST00000514610 LYPD8Q6UX82 237 aa10.38□□□□□ -0.75
HMGCS1-207ENST00000514610 EPS8L1Q8TE68 723 aa10.38□□□□□ -0.75
HMGCS1-207ENST00000514610 IL21Q9HBE4 155 aa10.38□□□□□ -0.75
HMGCS1-207ENST00000514610 GDPD2Q9HCC8 539 aa10.38□□□□□ -0.75
HMGCS1-207ENST00000514610 GPR37L1O60883 481 aa10.37□□□□□ -0.75
HMGCS1-207ENST00000514610 ADH1BP00325 375 aa10.37□□□□□ -0.75
HMGCS1-207ENST00000514610 JUNDP17535 347 aa10.37□□□□□ -0.75
HMGCS1-207ENST00000514610 MSS51Q4VC12 460 aa10.37□□□□□ -0.75
HMGCS1-207ENST00000514610 TBC1D2BQ9UPU7 963 aa10.37□□□□□ -0.75
HMGCS1-207ENST00000514610 FNBP4Q8N3X1 1017 aaPredicted RBP10.36□□□□□ -0.75
HMGCS1-207ENST00000514610 RAD21O60216 631 aa10.35□□□□□ -0.75
HMGCS1-207ENST00000514610 DXOO77932 396 aaKnown RBP10.35□□□□□ -0.75
HMGCS1-207ENST00000514610 PROSER2Q86WR7 435 aaPredicted RBP10.35□□□□□ -0.75
HMGCS1-207ENST00000514610 NKX2-3Q8TAU0 364 aa10.35□□□□□ -0.75
HMGCS1-207ENST00000514610 TRAK2O60296 914 aa10.34□□□□□ -0.75
HMGCS1-207ENST00000514610 NR6A1Q15406 480 aa10.34□□□□□ -0.75
HMGCS1-207ENST00000514610 MMP16P51512 607 aa10.33□□□□□ -0.76
HMGCS1-207ENST00000514610 APBB1O00213 710 aa10.32□□□□□ -0.76
HMGCS1-207ENST00000514610 F12P00748 615 aaPredicted RBP10.32□□□□□ -0.76
HMGCS1-207ENST00000514610 C1orf115Q9H7X2 142 aa10.32□□□□□ -0.76
HMGCS1-207ENST00000514610 NDUFB9Q9Y6M9 179 aa10.32□□□□□ -0.76
HMGCS1-207ENST00000514610 ABL2P42684 1182 aa10.31□□□□□ -0.76
HMGCS1-207ENST00000514610 PTPRNQ16849 979 aa10.31□□□□□ -0.76
HMGCS1-207ENST00000514610 MAP10Q9P2G4 905 aa10.31□□□□□ -0.76
HMGCS1-207ENST00000514610 ARID3CA6NKF2 412 aa10.3□□□□□ -0.76
HMGCS1-207ENST00000514610 IRF5Q13568 498 aa10.3□□□□□ -0.76
HMGCS1-207ENST00000514610 ITGBL1O95965 494 aaPredicted RBP10.29□□□□□ -0.76
HMGCS1-207ENST00000514610 SLC6A16Q9GZN6 736 aa10.29□□□□□ -0.76
HMGCS1-207ENST00000514610 S1PR4O95977 384 aa10.27□□□□□ -0.77
HMGCS1-207ENST00000514610 CCNYL3P0C7X3 344 aa10.27□□□□□ -0.77
HMGCS1-207ENST00000514610 NUDT12Q9BQG2 462 aa10.27□□□□□ -0.77
HMGCS1-207ENST00000514610 PRM3Q9NNZ6 103 aa10.27□□□□□ -0.77
HMGCS1-207ENST00000514610 EVA1BQ9NVM1 165 aa10.26□□□□□ -0.77
HMGCS1-207ENST00000514610 KCNC4Q03721 635 aa10.25□□□□□ -0.77
HMGCS1-207ENST00000514610 ZNF777Q9ULD5 760 aaPredicted RBP10.25□□□□□ -0.77
HMGCS1-207ENST00000514610 POM121CA8CG34 1229 aa10.24□□□□□ -0.77
HMGCS1-207ENST00000514610 CTHP32929 405 aa10.24□□□□□ -0.77
HMGCS1-207ENST00000514610 KCNH2Q12809 1159 aa10.24□□□□□ -0.77
HMGCS1-207ENST00000514610 ZNF330Q9Y3S2 320 aaPredicted RBP10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms