RNA–Protein interactions for RNA: ENST00000514439.1

CPNE4-211, Transcript of copine 4, humanhuman

TSL 1 (best)

Gene CPNE4, Length 2,312 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-211ENST00000514439 SAFB2Q14151 953 aaKnown RBP eCLIP10.85□□□□□ -0.67
CPNE4-211ENST00000514439 STK26Q9P289 416 aa10.85□□□□□ -0.67
CPNE4-211ENST00000514439 CLTCQ00610 1675 aaKnown RBP10.84□□□□□ -0.67
CPNE4-211ENST00000514439 ARHGEF40Q8TER5 1519 aa10.84□□□□□ -0.67
CPNE4-211ENST00000514439 MORC1Q86VD1 984 aa10.84□□□□□ -0.67
CPNE4-211ENST00000514439 CCDC146Q8IYE0 955 aa10.84□□□□□ -0.67
CPNE4-211ENST00000514439 POLR3AO14802 1390 aaPredicted RBP10.84□□□□□ -0.67
CPNE4-211ENST00000514439 PTPRMP28827 1452 aa10.84□□□□□ -0.67
CPNE4-211ENST00000514439 SPATA31D1Q6ZQQ2 1576 aa10.84□□□□□ -0.67
CPNE4-211ENST00000514439 ANKRD36BQ8N2N9 1353 aa10.84□□□□□ -0.67
CPNE4-211ENST00000514439 CGNL1Q0VF96 1302 aa10.83□□□□□ -0.68
CPNE4-211ENST00000514439 EXOC6Q8TAG9 804 aa10.83□□□□□ -0.68
CPNE4-211ENST00000514439 CABP2Q9NPB3 220 aa10.83□□□□□ -0.68
CPNE4-211ENST00000514439 STAG3Q9UJ98 1225 aa10.83□□□□□ -0.68
CPNE4-211ENST00000514439 YTHDC2Q9H6S0 1430 aaKnown RBP10.83□□□□□ -0.68
CPNE4-211ENST00000514439 MLECQ14165 292 aa10.83□□□□□ -0.68
CPNE4-211ENST00000514439 ALKQ9UM73 1620 aa10.82□□□□□ -0.68
CPNE4-211ENST00000514439 TNNT2P45379 298 aaPredicted RBP10.82□□□□□ -0.68
CPNE4-211ENST00000514439 GOLGA2Q08379 1002 aa10.82□□□□□ -0.68
CPNE4-211ENST00000514439 DUSP27Q5VZP5 1158 aa10.82□□□□□ -0.68
CPNE4-211ENST00000514439 KIF13AQ9H1H9 1805 aa10.82□□□□□ -0.68
CPNE4-211ENST00000514439 A2ML1A8K2U0 1454 aa10.82□□□□□ -0.68
CPNE4-211ENST00000514439 APAF1O14727 1248 aa10.81□□□□□ -0.68
CPNE4-211ENST00000514439 PRAM1Q96QH2 718 aa10.81□□□□□ -0.68
CPNE4-211ENST00000514439 NSD2O96028 1365 aa10.81□□□□□ -0.68
CPNE4-211ENST00000514439 PLIN1O60240 522 aa10.8□□□□□ -0.68
CPNE4-211ENST00000514439 NINLQ9Y2I6 1382 aa10.8□□□□□ -0.68
CPNE4-211ENST00000514439 SRPK2P78362 688 aaKnown RBP10.8□□□□□ -0.68
CPNE4-211ENST00000514439 POGKQ9P215 609 aa10.8□□□□□ -0.68
CPNE4-211ENST00000514439 MINK1Q8N4C8 1332 aaPredicted RBP10.8□□□□□ -0.68
CPNE4-211ENST00000514439 A0A1W2PP64 1363 aa10.8□□□□□ -0.68
CPNE4-211ENST00000514439 SHPRHQ149N8 1683 aa10.79□□□□□ -0.68
CPNE4-211ENST00000514439 SLFN5Q08AF3 891 aa10.79□□□□□ -0.68
CPNE4-211ENST00000514439 ATAD2Q6PL18 1390 aa10.79□□□□□ -0.68
CPNE4-211ENST00000514439 RIMS2Q9UQ26 1411 aa10.79□□□□□ -0.68
CPNE4-211ENST00000514439 ABCC11Q96J66 1382 aa10.78□□□□□ -0.68
CPNE4-211ENST00000514439 MTHFSP49914 203 aa10.78□□□□□ -0.68
CPNE4-211ENST00000514439 TRMT2AQ8IZ69 625 aaKnown RBP10.78□□□□□ -0.68
CPNE4-211ENST00000514439 NGEFQ8N5V2 710 aa10.78□□□□□ -0.68
CPNE4-211ENST00000514439 SPINK5Q9NQ38 1064 aaPredicted RBP10.78□□□□□ -0.68
CPNE4-211ENST00000514439 CD163L1Q9NR16 1453 aa10.76□□□□□ -0.69
CPNE4-211ENST00000514439 ZMYM3Q14202 1370 aa10.76□□□□□ -0.69
CPNE4-211ENST00000514439 FANCIQ9NVI1 1328 aa10.76□□□□□ -0.69
CPNE4-211ENST00000514439 CFAP53Q96M91 514 aa10.76□□□□□ -0.69
CPNE4-211ENST00000514439 CRBNQ96SW2 442 aa10.76□□□□□ -0.69
CPNE4-211ENST00000514439 ESF1Q9H501 851 aaKnown RBP10.76□□□□□ -0.69
CPNE4-211ENST00000514439 DLC1Q96QB1 1528 aa10.76□□□□□ -0.69
CPNE4-211ENST00000514439 E9PSI1 815 aa10.75□□□□□ -0.69
CPNE4-211ENST00000514439 DMRT2Q9Y5R5 561 aa10.75□□□□□ -0.69
CPNE4-211ENST00000514439 SETD1AO15047 1707 aaKnown RBP10.75□□□□□ -0.69
CPNE4-211ENST00000514439 NKTRP30414 1462 aaKnown RBP10.75□□□□□ -0.69
CPNE4-211ENST00000514439 C20orf194Q5TEA3 1177 aa10.75□□□□□ -0.69
CPNE4-211ENST00000514439 CDK19Q9BWU1 502 aa10.75□□□□□ -0.69
CPNE4-211ENST00000514439 TERF2IPQ9NYB0 399 aa10.75□□□□□ -0.69
CPNE4-211ENST00000514439 IQSEC2Q5JU85 1478 aa10.75□□□□□ -0.69
CPNE4-211ENST00000514439 RUNDC1Q96C34 613 aa10.74□□□□□ -0.69
CPNE4-211ENST00000514439 WWC1Q8IX03 1113 aa10.74□□□□□ -0.69
CPNE4-211ENST00000514439 GGNBP2Q9H3C7 697 aa10.74□□□□□ -0.69
CPNE4-211ENST00000514439 NLRP1Q9C000 1473 aa10.74□□□□□ -0.69
CPNE4-211ENST00000514439 NRXN3Q9Y4C0 1643 aa10.74□□□□□ -0.69
CPNE4-211ENST00000514439 WAPLQ7Z5K2 1190 aa10.73□□□□□ -0.69
CPNE4-211ENST00000514439 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.73□□□□□ -0.69
CPNE4-211ENST00000514439 MED14O60244 1454 aa10.72□□□□□ -0.69
CPNE4-211ENST00000514439 FYB1O15117 783 aa10.72□□□□□ -0.69
CPNE4-211ENST00000514439 HDGFL2Q7Z4V5 671 aaPredicted RBP10.72□□□□□ -0.69
CPNE4-211ENST00000514439 TCP11L2Q8N4U5 519 aa10.72□□□□□ -0.69
CPNE4-211ENST00000514439 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.72□□□□□ -0.69
CPNE4-211ENST00000514439 TNRQ92752 1358 aa10.72□□□□□ -0.69
CPNE4-211ENST00000514439 CABP1Q9NZU7 370 aa10.72□□□□□ -0.69
CPNE4-211ENST00000514439 RRP7AQ9Y3A4 280 aaKnown RBP10.72□□□□□ -0.69
CPNE4-211ENST00000514439 METP08581 1390 aa10.71□□□□□ -0.69
CPNE4-211ENST00000514439 NEUROD2Q15784 382 aa10.71□□□□□ -0.69
CPNE4-211ENST00000514439 ANKRD26Q9UPS8 1709 aa10.7□□□□□ -0.7
CPNE4-211ENST00000514439 U2AF1L5P0DN76 240 aaPredicted RBP10.7□□□□□ -0.7
CPNE4-211ENST00000514439 U2AF1Q01081 240 aaKnown RBP eCLIP10.7□□□□□ -0.7
CPNE4-211ENST00000514439 COL3A1P02461 1466 aaPredicted RBP10.7□□□□□ -0.7
CPNE4-211ENST00000514439 ATP7BP35670 1465 aa10.69□□□□□ -0.7
CPNE4-211ENST00000514439 BCAR3O75815 825 aa10.69□□□□□ -0.7
CPNE4-211ENST00000514439 CCDC27Q2M243 656 aa10.68□□□□□ -0.7
CPNE4-211ENST00000514439 ANP32EQ9BTT0 268 aa10.68□□□□□ -0.7
CPNE4-211ENST00000514439 ADGRB2O60241 1585 aa10.68□□□□□ -0.7
CPNE4-211ENST00000514439 TMEM2Q9UHN6 1383 aa10.68□□□□□ -0.7
CPNE4-211ENST00000514439 HDGFP51858 240 aaKnown RBP10.68□□□□□ -0.7
CPNE4-211ENST00000514439 WDR63Q8IWG1 891 aa10.68□□□□□ -0.7
CPNE4-211ENST00000514439 TECPR2O15040 1411 aa10.68□□□□□ -0.7
CPNE4-211ENST00000514439 UBR1Q8IWV7 1749 aa10.67□□□□□ -0.7
CPNE4-211ENST00000514439 WASLO00401 505 aaPredicted RBP10.67□□□□□ -0.7
CPNE4-211ENST00000514439 TCERG1O14776 1098 aaKnown RBP10.67□□□□□ -0.7
CPNE4-211ENST00000514439 TXNDC2Q86VQ3 553 aa10.67□□□□□ -0.7
CPNE4-211ENST00000514439 KIF20BQ96Q89 1820 aa10.67□□□□□ -0.7
CPNE4-211ENST00000514439 FAM135BQ49AJ0 1406 aa10.67□□□□□ -0.7
CPNE4-211ENST00000514439 U2SURPO15042 1029 aaKnown RBP10.67□□□□□ -0.7
CPNE4-211ENST00000514439 NCBP3Q53F19 620 aaKnown RBP10.67□□□□□ -0.7
CPNE4-211ENST00000514439 KNDC1Q76NI1 1749 aa10.66□□□□□ -0.7
CPNE4-211ENST00000514439 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.66□□□□□ -0.7
CPNE4-211ENST00000514439 CPS1P31327 1500 aa10.66□□□□□ -0.7
CPNE4-211ENST00000514439 KDM2BQ8NHM5 1336 aa10.66□□□□□ -0.7
CPNE4-211ENST00000514439 PNPLA6Q8IY17 1366 aa10.65□□□□□ -0.7
CPNE4-211ENST00000514439 CPSF1Q10570 1443 aaKnown RBP10.65□□□□□ -0.7
CPNE4-211ENST00000514439 PPIP5K1Q6PFW1 1433 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms