RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 SPHKAPQ2M3C7 1700 aa11.83□□□□□ -0.52
LIMCH1-215ENST00000512632 U2SURPO15042 1029 aaKnown RBP11.83□□□□□ -0.52
LIMCH1-215ENST00000512632 POGKQ9P215 609 aa11.83□□□□□ -0.52
LIMCH1-215ENST00000512632 MYOM1P52179 1685 aa11.83□□□□□ -0.52
LIMCH1-215ENST00000512632 ARXQ96QS3 562 aa11.83□□□□□ -0.52
LIMCH1-215ENST00000512632 UPF2Q9HAU5 1272 aaKnown RBP11.83□□□□□ -0.52
LIMCH1-215ENST00000512632 CABP2Q9NPB3 220 aa11.83□□□□□ -0.52
LIMCH1-215ENST00000512632 SHROOM2Q13796 1616 aa11.82□□□□□ -0.52
LIMCH1-215ENST00000512632 KDM5AP29375 1690 aaKnown RBP11.82□□□□□ -0.52
LIMCH1-215ENST00000512632 WDR63Q8IWG1 891 aa11.82□□□□□ -0.52
LIMCH1-215ENST00000512632 C14orf93Q9H972 538 aaKnown RBP11.82□□□□□ -0.52
LIMCH1-215ENST00000512632 FTSJ3Q8IY81 847 aaKnown RBP11.82□□□□□ -0.52
LIMCH1-215ENST00000512632 RWDD1Q9H446 243 aaPredicted RBP11.82□□□□□ -0.52
LIMCH1-215ENST00000512632 STK26Q9P289 416 aa11.82□□□□□ -0.52
LIMCH1-215ENST00000512632 ADGRL1O94910 1474 aa11.81□□□□□ -0.52
LIMCH1-215ENST00000512632 ATP7AQ04656 1500 aa11.81□□□□□ -0.52
LIMCH1-215ENST00000512632 PHF23Q9BUL5 403 aaPredicted RBP11.8□□□□□ -0.52
LIMCH1-215ENST00000512632 MYH16Q9H6N6 1097 aa11.8□□□□□ -0.52
LIMCH1-215ENST00000512632 CEP152O94986 1710 aa11.8□□□□□ -0.52
LIMCH1-215ENST00000512632 GGNBP2Q9H3C7 697 aa11.8□□□□□ -0.52
LIMCH1-215ENST00000512632 EXOSC9Q06265 439 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-215ENST00000512632 SMC4Q9NTJ3 1288 aa11.79□□□□□ -0.52
LIMCH1-215ENST00000512632 ABCA6Q8N139 1617 aa11.79□□□□□ -0.52
LIMCH1-215ENST00000512632 NINLQ9Y2I6 1382 aa11.79□□□□□ -0.52
LIMCH1-215ENST00000512632 ZKSCAN2Q63HK3 967 aa11.79□□□□□ -0.52
LIMCH1-215ENST00000512632 DZIP1LQ8IYY4 767 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-215ENST00000512632 TBC1D2Q9BYX2 928 aa11.79□□□□□ -0.52
LIMCH1-215ENST00000512632 TET3O43151 1660 aa11.79□□□□□ -0.52
LIMCH1-215ENST00000512632 MAP3K4Q9Y6R4 1608 aa11.79□□□□□ -0.52
LIMCH1-215ENST00000512632 MVPQ14764 893 aaKnown RBP11.78□□□□□ -0.52
LIMCH1-215ENST00000512632 UHRF1BP1LA0JNW5 1464 aa11.78□□□□□ -0.52
LIMCH1-215ENST00000512632 SBNO2Q9Y2G9 1366 aa11.78□□□□□ -0.52
LIMCH1-215ENST00000512632 MYOM2P54296 1465 aa11.78□□□□□ -0.52
LIMCH1-215ENST00000512632 TBC1D32Q96NH3 1257 aa11.78□□□□□ -0.52
LIMCH1-215ENST00000512632 MFAP1P55081 439 aaKnown RBP11.78□□□□□ -0.52
LIMCH1-215ENST00000512632 SRPK2P78362 688 aaKnown RBP11.78□□□□□ -0.52
LIMCH1-215ENST00000512632 CFAP65Q6ZU64 1925 aaKnown RBP11.77□□□□□ -0.53
LIMCH1-215ENST00000512632 EVC2Q86UK5 1308 aa11.77□□□□□ -0.53
LIMCH1-215ENST00000512632 ITPRIPQ8IWB1 547 aa11.77□□□□□ -0.53
LIMCH1-215ENST00000512632 SSH1Q8WYL5 1049 aa11.76□□□□□ -0.53
LIMCH1-215ENST00000512632 CCDC27Q2M243 656 aa11.76□□□□□ -0.53
LIMCH1-215ENST00000512632 TRIM27P14373 513 aa11.75□□□□□ -0.53
LIMCH1-215ENST00000512632 GZF1Q9H116 711 aaPredicted RBP11.75□□□□□ -0.53
LIMCH1-215ENST00000512632 ANTXR1Q9H6X2 564 aa11.75□□□□□ -0.53
LIMCH1-215ENST00000512632 VWDEQ8N2E2 1590 aa11.75□□□□□ -0.53
LIMCH1-215ENST00000512632 TMPOP42166 694 aaKnown RBP11.75□□□□□ -0.53
LIMCH1-215ENST00000512632 EIF5BO60841 1220 aaKnown RBP11.74□□□□□ -0.53
LIMCH1-215ENST00000512632 AAMPQ13685 434 aa11.74□□□□□ -0.53
LIMCH1-215ENST00000512632 DEPDC5O75140 1603 aa11.74□□□□□ -0.53
LIMCH1-215ENST00000512632 NPATQ14207 1427 aa11.74□□□□□ -0.53
LIMCH1-215ENST00000512632 NOB1Q9ULX3 412 aaKnown RBP11.74□□□□□ -0.53
LIMCH1-215ENST00000512632 MINK1Q8N4C8 1332 aaPredicted RBP11.73□□□□□ -0.53
LIMCH1-215ENST00000512632 VGFO15240 615 aaPredicted RBP11.73□□□□□ -0.53
LIMCH1-215ENST00000512632 NPM1P06748 294 aaKnown RBP eCLIP11.73□□□□□ -0.53
LIMCH1-215ENST00000512632 C22orf23Q9BZE7 217 aa11.73□□□□□ -0.53
LIMCH1-215ENST00000512632 ZNF518AQ6AHZ1 1483 aa11.73□□□□□ -0.53
LIMCH1-215ENST00000512632 FBLN1P23142 703 aa11.73□□□□□ -0.53
LIMCH1-215ENST00000512632 RIPK4P57078 832 aa11.73□□□□□ -0.53
LIMCH1-215ENST00000512632 TRIM35Q9UPQ4 493 aa11.73□□□□□ -0.53
LIMCH1-215ENST00000512632 KIAA1210Q9ULL0 1709 aa11.73□□□□□ -0.53
LIMCH1-215ENST00000512632 RAPGEF3O95398 923 aa11.72□□□□□ -0.53
LIMCH1-215ENST00000512632 TMEM57Q8N5G2 664 aa11.72□□□□□ -0.53
LIMCH1-215ENST00000512632 EFCAB6Q5THR3 1501 aa11.72□□□□□ -0.53
LIMCH1-215ENST00000512632 MROH1Q8NDA8 1641 aa11.72□□□□□ -0.53
LIMCH1-215ENST00000512632 ATF7IPQ6VMQ6 1270 aa11.72□□□□□ -0.53
LIMCH1-215ENST00000512632 ASXL2Q76L83 1435 aa11.72□□□□□ -0.53
LIMCH1-215ENST00000512632 NLRP1Q9C000 1473 aa11.72□□□□□ -0.53
LIMCH1-215ENST00000512632 INO80Q9ULG1 1556 aaPredicted RBP11.72□□□□□ -0.53
LIMCH1-215ENST00000512632 IDI1Q13907 227 aa11.71□□□□□ -0.53
LIMCH1-215ENST00000512632 ANKRD36BQ8N2N9 1353 aa11.71□□□□□ -0.53
LIMCH1-215ENST00000512632 ARAP3Q8WWN8 1544 aa11.71□□□□□ -0.53
LIMCH1-215ENST00000512632 IQSEC2Q5JU85 1478 aa11.71□□□□□ -0.54
LIMCH1-215ENST00000512632 NRXN1Q9ULB1 1477 aa11.71□□□□□ -0.54
LIMCH1-215ENST00000512632 LNPKQ9C0E8 428 aa11.71□□□□□ -0.54
LIMCH1-215ENST00000512632 DDX19BQ9UMR2 479 aa11.71□□□□□ -0.54
LIMCH1-215ENST00000512632 KIF1BO60333 1816 aa11.7□□□□□ -0.54
LIMCH1-215ENST00000512632 RPGRIP1LQ68CZ1 1315 aa11.7□□□□□ -0.54
LIMCH1-215ENST00000512632 FYB1O15117 783 aa11.7□□□□□ -0.54
LIMCH1-215ENST00000512632 PLEKHF1Q96S99 279 aa11.7□□□□□ -0.54
LIMCH1-215ENST00000512632 MROH2AA6NES4 1674 aa11.7□□□□□ -0.54
LIMCH1-215ENST00000512632 PPRC1Q5VV67 1664 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-215ENST00000512632 ELL2O00472 640 aaPredicted RBP11.69□□□□□ -0.54
LIMCH1-215ENST00000512632 MCM4P33991 863 aa11.69□□□□□ -0.54
LIMCH1-215ENST00000512632 A0A1W2PP64 1363 aa11.69□□□□□ -0.54
LIMCH1-215ENST00000512632 SHPRHQ149N8 1683 aa11.68□□□□□ -0.54
LIMCH1-215ENST00000512632 PRAM1Q96QH2 718 aa11.68□□□□□ -0.54
LIMCH1-215ENST00000512632 DIAPH1O60610 1272 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-215ENST00000512632 CD109Q6YHK3 1445 aa11.68□□□□□ -0.54
LIMCH1-215ENST00000512632 ADGRB1O14514 1584 aa11.68□□□□□ -0.54
LIMCH1-215ENST00000512632 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.68□□□□□ -0.54
LIMCH1-215ENST00000512632 THUMPD2Q9BTF0 503 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-215ENST00000512632 HDAC1Q13547 482 aaPredicted RBP11.67□□□□□ -0.54
LIMCH1-215ENST00000512632 ADGRB3O60242 1522 aa11.67□□□□□ -0.54
LIMCH1-215ENST00000512632 TERF2IPQ9NYB0 399 aa11.67□□□□□ -0.54
LIMCH1-215ENST00000512632 CT47B1P0C2W7 299 aaPredicted RBP11.67□□□□□ -0.54
LIMCH1-215ENST00000512632 SMC5Q8IY18 1101 aa11.67□□□□□ -0.54
LIMCH1-215ENST00000512632 ZBTB40Q9NUA8 1239 aa11.67□□□□□ -0.54
LIMCH1-215ENST00000512632 C1orf115Q9H7X2 142 aa11.66□□□□□ -0.54
LIMCH1-215ENST00000512632 CHMP5Q9NZZ3 219 aa11.66□□□□□ -0.54
LIMCH1-215ENST00000512632 ABCA9Q8IUA7 1624 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms