RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 RNF39Q9H2S5 420 aa14.43□□□□□ -0.1
NUP54-211ENST00000512151 E9PCH4 1651 aa14.43□□□□□ -0.1
NUP54-211ENST00000512151 MARF1Q9Y4F3 1742 aaKnown RBP14.43□□□□□ -0.1
NUP54-211ENST00000512151 VPS8Q8N3P4 1428 aa14.42□□□□□ -0.1
NUP54-211ENST00000512151 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.41□□□□□ -0.1
NUP54-211ENST00000512151 ADGRL2O95490 1459 aa14.4□□□□□ -0.1
NUP54-211ENST00000512151 ANKRD50Q9ULJ7 1429 aa14.39□□□□□ -0.11
NUP54-211ENST00000512151 SF3B2Q13435 895 aaKnown RBP14.39□□□□□ -0.11
NUP54-211ENST00000512151 SPHKAPQ2M3C7 1700 aa14.39□□□□□ -0.11
NUP54-211ENST00000512151 SEPT12Q8IYM1 358 aa14.38□□□□□ -0.11
NUP54-211ENST00000512151 SLIT2O94813 1529 aa14.38□□□□□ -0.11
NUP54-211ENST00000512151 YY1P25490 414 aa14.37□□□□□ -0.11
NUP54-211ENST00000512151 UNC5CLQ8IV45 518 aa14.37□□□□□ -0.11
NUP54-211ENST00000512151 PXDNQ92626 1479 aa14.37□□□□□ -0.11
NUP54-211ENST00000512151 XPCQ01831 940 aaPredicted RBP14.36□□□□□ -0.11
NUP54-211ENST00000512151 ROBO2Q9HCK4 1378 aa14.35□□□□□ -0.11
NUP54-211ENST00000512151 IQGAP3Q86VI3 1631 aa14.35□□□□□ -0.11
NUP54-211ENST00000512151 R3HDM1Q15032 1099 aaKnown RBP14.34□□□□□ -0.11
NUP54-211ENST00000512151 BAG6P46379 1132 aa14.32□□□□□ -0.12
NUP54-211ENST00000512151 KRT27Q7Z3Y8 459 aa14.32□□□□□ -0.12
NUP54-211ENST00000512151 NPHP3Q7Z494 1330 aa14.31□□□□□ -0.12
NUP54-211ENST00000512151 ONECUT3O60422 494 aaPredicted RBP14.31□□□□□ -0.12
NUP54-211ENST00000512151 EN1Q05925 392 aaPredicted RBP14.31□□□□□ -0.12
NUP54-211ENST00000512151 FOXO3O43524 673 aa14.3□□□□□ -0.12
NUP54-211ENST00000512151 ZNF326Q5BKZ1 582 aaKnown RBP14.3□□□□□ -0.12
NUP54-211ENST00000512151 ESCO1Q5FWF5 840 aa14.3□□□□□ -0.12
NUP54-211ENST00000512151 VPS72Q15906 364 aa14.29□□□□□ -0.12
NUP54-211ENST00000512151 NEXMIFQ5QGS0 1516 aa14.29□□□□□ -0.12
NUP54-211ENST00000512151 USP32Q8NFA0 1604 aa14.27□□□□□ -0.12
NUP54-211ENST00000512151 PRAG1Q86YV5 1406 aa14.25□□□□□ -0.13
NUP54-211ENST00000512151 FAM182BQ5T319 152 aa14.25□□□□□ -0.13
NUP54-211ENST00000512151 SPATA31A3Q5VYP0 1347 aa14.25□□□□□ -0.13
NUP54-211ENST00000512151 PLCH1Q4KWH8 1693 aa14.24□□□□□ -0.13
NUP54-211ENST00000512151 CCDC9Q9Y3X0 531 aaKnown RBP14.24□□□□□ -0.13
NUP54-211ENST00000512151 CDC42BPGQ6DT37 1551 aa14.24□□□□□ -0.13
NUP54-211ENST00000512151 FAM50AQ14320 339 aaKnown RBP14.23□□□□□ -0.13
NUP54-211ENST00000512151 EZH2Q15910 746 aaKnown RBP14.23□□□□□ -0.13
NUP54-211ENST00000512151 NUP155O75694 1391 aa14.23□□□□□ -0.13
NUP54-211ENST00000512151 HFM1A2PYH4 1435 aa14.23□□□□□ -0.13
NUP54-211ENST00000512151 RGPD1P0DJD0 1748 aa14.23□□□□□ -0.13
NUP54-211ENST00000512151 NUTM2FA1L443 756 aa14.22□□□□□ -0.13
NUP54-211ENST00000512151 CABLES1Q8TDN4 633 aa14.22□□□□□ -0.13
NUP54-211ENST00000512151 TNS1Q9HBL0 1735 aaKnown RBP14.22□□□□□ -0.13
NUP54-211ENST00000512151 DISP2A7MBM2 1401 aa14.22□□□□□ -0.13
NUP54-211ENST00000512151 CLTCL1P53675 1640 aa14.22□□□□□ -0.13
NUP54-211ENST00000512151 IFFO2Q5TF58 517 aa14.22□□□□□ -0.13
NUP54-211ENST00000512151 NWD2Q9ULI1 1742 aa14.21□□□□□ -0.13
NUP54-211ENST00000512151 FAM98CQ17RN3 349 aaKnown RBP14.21□□□□□ -0.14
NUP54-211ENST00000512151 A0A0G2JS52 829 aa14.2□□□□□ -0.14
NUP54-211ENST00000512151 PLEKHG5O94827 1062 aa14.2□□□□□ -0.14
NUP54-211ENST00000512151 MYT1Q01538 1121 aa14.2□□□□□ -0.14
NUP54-211ENST00000512151 LRPPRCP42704 1394 aaKnown RBP14.19□□□□□ -0.14
NUP54-211ENST00000512151 NAIPQ13075 1403 aa14.19□□□□□ -0.14
NUP54-211ENST00000512151 CAMKK2Q96RR4 588 aa14.19□□□□□ -0.14
NUP54-211ENST00000512151 LOC105371045A0A1W2PR82 267 aa14.18□□□□□ -0.14
NUP54-211ENST00000512151 FAM83GA6ND36 823 aa14.18□□□□□ -0.14
NUP54-211ENST00000512151 DCAF8L1A6NGE4 600 aa14.18□□□□□ -0.14
NUP54-211ENST00000512151 NRAPQ86VF7 1730 aa14.17□□□□□ -0.14
NUP54-211ENST00000512151 ABCA3Q99758 1704 aa14.17□□□□□ -0.14
NUP54-211ENST00000512151 KRT28Q7Z3Y7 464 aa14.17□□□□□ -0.14
NUP54-211ENST00000512151 CAMTA1Q9Y6Y1 1673 aa14.16□□□□□ -0.14
NUP54-211ENST00000512151 HAP1P54257 671 aaPredicted RBP14.15□□□□□ -0.14
NUP54-211ENST00000512151 C1QBPQ07021 282 aaKnown RBP14.15□□□□□ -0.14
NUP54-211ENST00000512151 WAPLQ7Z5K2 1190 aa14.15□□□□□ -0.14
NUP54-211ENST00000512151 CCDC144AA2RUR9 1427 aa14.15□□□□□ -0.14
NUP54-211ENST00000512151 TNS3Q68CZ2 1445 aa14.15□□□□□ -0.14
NUP54-211ENST00000512151 ZNF784Q8NCA9 323 aaPredicted RBP14.14□□□□□ -0.15
NUP54-211ENST00000512151 ROCK1Q13464 1354 aa14.14□□□□□ -0.15
NUP54-211ENST00000512151 PLEKHH1Q9ULM0 1364 aa14.14□□□□□ -0.15
NUP54-211ENST00000512151 SENP3-EIF4A1A0A087X0R7 540 aa14.13□□□□□ -0.15
NUP54-211ENST00000512151 THSD7AQ9UPZ6 1657 aa14.13□□□□□ -0.15
NUP54-211ENST00000512151 FMN2Q9NZ56 1722 aa14.13□□□□□ -0.15
NUP54-211ENST00000512151 KIF1AQ12756 1690 aa14.12□□□□□ -0.15
NUP54-211ENST00000512151 TRIM37O94972 964 aa14.12□□□□□ -0.15
NUP54-211ENST00000512151 APLP2Q06481 763 aa14.12□□□□□ -0.15
NUP54-211ENST00000512151 RREB1Q92766 1687 aa14.12□□□□□ -0.15
NUP54-211ENST00000512151 KIF1BO60333 1816 aa14.12□□□□□ -0.15
NUP54-211ENST00000512151 VGFO15240 615 aaPredicted RBP14.11□□□□□ -0.15
NUP54-211ENST00000512151 BTG4Q9NY30 223 aa14.11□□□□□ -0.15
NUP54-211ENST00000512151 NUP188Q5SRE5 1749 aa14.11□□□□□ -0.15
NUP54-211ENST00000512151 NINLQ9Y2I6 1382 aa14.1□□□□□ -0.15
NUP54-211ENST00000512151 SPATA31A5Q5VU36 1347 aa14.1□□□□□ -0.15
NUP54-211ENST00000512151 SPATA31A7Q8IWB4 1347 aa14.1□□□□□ -0.15
NUP54-211ENST00000512151 ADGRB2O60241 1585 aa14.1□□□□□ -0.15
NUP54-211ENST00000512151 PPP1R1BQ9UD71 204 aaPredicted RBP14.09□□□□□ -0.15
NUP54-211ENST00000512151 RGPD8O14715 1765 aaPredicted RBP14.09□□□□□ -0.15
NUP54-211ENST00000512151 APBA3O96018 575 aa14.09□□□□□ -0.15
NUP54-211ENST00000512151 LMOD2Q6P5Q4 547 aa14.09□□□□□ -0.15
NUP54-211ENST00000512151 SPON1Q9HCB6 807 aa14.09□□□□□ -0.15
NUP54-211ENST00000512151 STK26Q9P289 416 aa14.09□□□□□ -0.15
NUP54-211ENST00000512151 SBNO1A3KN83 1393 aa14.08□□□□□ -0.15
NUP54-211ENST00000512151 TECPR2O15040 1411 aa14.08□□□□□ -0.16
NUP54-211ENST00000512151 KCNQ2O43526 872 aa14.08□□□□□ -0.16
NUP54-211ENST00000512151 PARD3Q8TEW0 1356 aa14.08□□□□□ -0.16
NUP54-211ENST00000512151 PPLO60437 1756 aa14.07□□□□□ -0.16
NUP54-211ENST00000512151 C1QTNF8P60827 252 aa14.07□□□□□ -0.16
NUP54-211ENST00000512151 PHF8Q9UPP1 1060 aa14.07□□□□□ -0.16
NUP54-211ENST00000512151 PSME1Q06323 249 aa14.06□□□□□ -0.16
NUP54-211ENST00000512151 COL14A1Q05707 1796 aaKnown RBP14.05□□□□□ -0.16
NUP54-211ENST00000512151 ARHGEF10O15013 1369 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms