RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 LMBRD1Q9NUN5 540 aa14.79□□□□□ -0.04
LIMCH1-213ENST00000511496 RNF216Q9NWF9 866 aaPredicted RBP14.79□□□□□ -0.04
LIMCH1-213ENST00000511496 NCOA3Q9Y6Q9 1424 aa14.79□□□□□ -0.04
LIMCH1-213ENST00000511496 PER1O15534 1290 aaPredicted RBP14.79□□□□□ -0.04
LIMCH1-213ENST00000511496 PLEKHH2Q8IVE3 1493 aa14.78□□□□□ -0.04
LIMCH1-213ENST00000511496 K7ELQ4 463 aaPredicted RBP14.78□□□□□ -0.04
LIMCH1-213ENST00000511496 MLECQ14165 292 aa14.78□□□□□ -0.04
LIMCH1-213ENST00000511496 LRSAM1Q6UWE0 723 aa14.78□□□□□ -0.04
LIMCH1-213ENST00000511496 CHAMP1Q96JM3 812 aa14.78□□□□□ -0.04
LIMCH1-213ENST00000511496 SLC52A1Q9NWF4 448 aa14.78□□□□□ -0.04
LIMCH1-213ENST00000511496 CALCOCO1Q9P1Z2 691 aa14.78□□□□□ -0.04
LIMCH1-213ENST00000511496 PLCB2Q00722 1185 aa14.77□□□□□ -0.04
LIMCH1-213ENST00000511496 FOXD4L5Q5VV16 416 aaPredicted RBP14.77□□□□□ -0.04
LIMCH1-213ENST00000511496 FOXD4L4Q8WXT5 416 aaPredicted RBP14.77□□□□□ -0.04
LIMCH1-213ENST00000511496 TMX1Q9H3N1 280 aa14.77□□□□□ -0.04
LIMCH1-213ENST00000511496 TERF2Q15554 542 aa14.76□□□□□ -0.05
LIMCH1-213ENST00000511496 TMEM63CQ9P1W3 806 aa14.76□□□□□ -0.05
LIMCH1-213ENST00000511496 GPT2Q8TD30 523 aa14.76□□□□□ -0.05
LIMCH1-213ENST00000511496 DIAPH3Q9NSV4 1193 aa14.76□□□□□ -0.05
LIMCH1-213ENST00000511496 RLBP1P12271 317 aa14.76□□□□□ -0.05
LIMCH1-213ENST00000511496 KCNG1Q9UIX4 513 aa14.76□□□□□ -0.05
LIMCH1-213ENST00000511496 HECW1Q76N89 1606 aa14.76□□□□□ -0.05
LIMCH1-213ENST00000511496 ZNF521Q96K83 1311 aa14.75□□□□□ -0.05
LIMCH1-213ENST00000511496 DMRT2Q9Y5R5 561 aa14.75□□□□□ -0.05
LIMCH1-213ENST00000511496 PKP1Q13835 747 aa14.75□□□□□ -0.05
LIMCH1-213ENST00000511496 ANKRD7Q92527 254 aa14.75□□□□□ -0.05
LIMCH1-213ENST00000511496 LOC102724159A0A0B4J2E5 919 aa14.75□□□□□ -0.05
LIMCH1-213ENST00000511496 PWP2Q15269 919 aaKnown RBP14.75□□□□□ -0.05
LIMCH1-213ENST00000511496 TPRNQ4KMQ1 711 aa14.74□□□□□ -0.05
LIMCH1-213ENST00000511496 CARMIL1Q5VZK9 1371 aa14.74□□□□□ -0.05
LIMCH1-213ENST00000511496 SOX12O15370 315 aa14.74□□□□□ -0.05
LIMCH1-213ENST00000511496 NSFL1CQ9UNZ2 370 aaKnown RBP14.74□□□□□ -0.05
LIMCH1-213ENST00000511496 NKTRP30414 1462 aaKnown RBP14.74□□□□□ -0.05
LIMCH1-213ENST00000511496 FKBP5Q13451 457 aaPredicted RBP14.73□□□□□ -0.05
LIMCH1-213ENST00000511496 CFTRP13569 1480 aa14.73□□□□□ -0.05
LIMCH1-213ENST00000511496 CNPY4Q8N129 248 aa14.73□□□□□ -0.05
LIMCH1-213ENST00000511496 USP25Q9UHP3 1055 aa14.73□□□□□ -0.05
LIMCH1-213ENST00000511496 TULP2O00295 520 aa14.72□□□□□ -0.05
LIMCH1-213ENST00000511496 NEUROD2Q15784 382 aa14.72□□□□□ -0.05
LIMCH1-213ENST00000511496 IGF1RP08069 1367 aa14.72□□□□□ -0.05
LIMCH1-213ENST00000511496 THOC2Q8NI27 1593 aaKnown RBP14.72□□□□□ -0.05
LIMCH1-213ENST00000511496 NAA30Q147X3 362 aaPredicted RBP14.72□□□□□ -0.05
LIMCH1-213ENST00000511496 CTNNA3Q9UI47 895 aa14.72□□□□□ -0.05
LIMCH1-213ENST00000511496 KIF21AQ7Z4S6 1674 aa14.72□□□□□ -0.05
LIMCH1-213ENST00000511496 FEZ2Q9UHY8 353 aaPredicted RBP14.72□□□□□ -0.05
LIMCH1-213ENST00000511496 PRR29P0C7W0 189 aa14.71□□□□□ -0.05
LIMCH1-213ENST00000511496 WWC1Q8IX03 1113 aa14.71□□□□□ -0.05
LIMCH1-213ENST00000511496 HAP1P54257 671 aaPredicted RBP14.71□□□□□ -0.05
LIMCH1-213ENST00000511496 TRMT2AQ8IZ69 625 aaKnown RBP14.71□□□□□ -0.05
LIMCH1-213ENST00000511496 AK9Q5TCS8 1911 aa14.71□□□□□ -0.06
LIMCH1-213ENST00000511496 CASKIN1Q8WXD9 1431 aa14.71□□□□□ -0.06
LIMCH1-213ENST00000511496 NINLQ9Y2I6 1382 aa14.71□□□□□ -0.06
LIMCH1-213ENST00000511496 TSPY26PQ9H489 355 aa14.7□□□□□ -0.06
LIMCH1-213ENST00000511496 RSPH14Q9UHP6 348 aa14.7□□□□□ -0.06
LIMCH1-213ENST00000511496 KDM5CP41229 1560 aa14.7□□□□□ -0.06
LIMCH1-213ENST00000511496 KIF16BQ96L93 1317 aa14.7□□□□□ -0.06
LIMCH1-213ENST00000511496 NCBP1Q09161 790 aaKnown RBP14.7□□□□□ -0.06
LIMCH1-213ENST00000511496 DDX41Q9UJV9 622 aaKnown RBP14.7□□□□□ -0.06
LIMCH1-213ENST00000511496 FYCO1Q9BQS8 1478 aa14.7□□□□□ -0.06
LIMCH1-213ENST00000511496 NUCB2P80303 420 aa14.69□□□□□ -0.06
LIMCH1-213ENST00000511496 EP400NLQ6ZTU2 488 aa14.69□□□□□ -0.06
LIMCH1-213ENST00000511496 CLEC17AQ6ZS10 378 aa14.69□□□□□ -0.06
LIMCH1-213ENST00000511496 KIF2CQ99661 725 aa14.69□□□□□ -0.06
LIMCH1-213ENST00000511496 TSPYL1Q9H0U9 437 aa14.69□□□□□ -0.06
LIMCH1-213ENST00000511496 HNRNPH2P55795 449 aaKnown RBP14.68□□□□□ -0.06
LIMCH1-213ENST00000511496 PKD2Q13563 968 aa14.68□□□□□ -0.06
LIMCH1-213ENST00000511496 SCAPERQ9BY12 1400 aa14.68□□□□□ -0.06
LIMCH1-213ENST00000511496 CLGNO14967 610 aa14.68□□□□□ -0.06
LIMCH1-213ENST00000511496 ARID3CA6NKF2 412 aa14.67□□□□□ -0.06
LIMCH1-213ENST00000511496 ADCY5O95622 1261 aa14.67□□□□□ -0.06
LIMCH1-213ENST00000511496 PPP2R1AP30153 589 aa14.67□□□□□ -0.06
LIMCH1-213ENST00000511496 KRT222Q8N1A0 295 aa14.67□□□□□ -0.06
LIMCH1-213ENST00000511496 SAMD1Q6SPF0 538 aaPredicted RBP14.67□□□□□ -0.06
LIMCH1-213ENST00000511496 ST7Q9NRC1 585 aa14.67□□□□□ -0.06
LIMCH1-213ENST00000511496 PSEN1P49768 467 aa14.67□□□□□ -0.06
LIMCH1-213ENST00000511496 FOXD4L6Q3SYB3 417 aaPredicted RBP14.67□□□□□ -0.06
LIMCH1-213ENST00000511496 FOXD4L3Q6VB84 417 aaPredicted RBP14.67□□□□□ -0.06
LIMCH1-213ENST00000511496 PATL2C9JE40 543 aaKnown RBP14.66□□□□□ -0.06
LIMCH1-213ENST00000511496 GTF2A1P52655 376 aaPredicted RBP14.66□□□□□ -0.06
LIMCH1-213ENST00000511496 LNPKQ9C0E8 428 aa14.66□□□□□ -0.06
LIMCH1-213ENST00000511496 INSRP06213 1382 aa14.66□□□□□ -0.06
LIMCH1-213ENST00000511496 ZMYM3Q14202 1370 aa14.66□□□□□ -0.06
LIMCH1-213ENST00000511496 SPTLC3Q9NUV7 552 aa14.65□□□□□ -0.06
LIMCH1-213ENST00000511496 MMP14P50281 582 aa14.65□□□□□ -0.06
LIMCH1-213ENST00000511496 TOMM22Q9NS69 142 aa14.65□□□□□ -0.06
LIMCH1-213ENST00000511496 MORC2Q9Y6X9 1032 aaPredicted RBP14.65□□□□□ -0.06
LIMCH1-213ENST00000511496 CTIFO43310 598 aaKnown RBP14.64□□□□□ -0.07
LIMCH1-213ENST00000511496 NCBP3Q53F19 620 aaKnown RBP14.64□□□□□ -0.07
LIMCH1-213ENST00000511496 GEMIN8Q9NWZ8 242 aaKnown RBP14.64□□□□□ -0.07
LIMCH1-213ENST00000511496 PYCARDQ9ULZ3 195 aa14.64□□□□□ -0.07
LIMCH1-213ENST00000511496 RAD51AP2Q09MP3 1159 aa14.64□□□□□ -0.07
LIMCH1-213ENST00000511496 SPC24Q8NBT2 197 aa14.64□□□□□ -0.07
LIMCH1-213ENST00000511496 KIF18AQ8NI77 898 aa14.64□□□□□ -0.07
LIMCH1-213ENST00000511496 BIVM-ERCC5R4GMW8 1640 aa14.64□□□□□ -0.07
LIMCH1-213ENST00000511496 RARSP54136 660 aaKnown RBP14.63□□□□□ -0.07
LIMCH1-213ENST00000511496 GPATCH11Q8N954 259 aa14.63□□□□□ -0.07
LIMCH1-213ENST00000511496 KNSTRNQ9Y448 316 aa14.63□□□□□ -0.07
LIMCH1-213ENST00000511496 EFCC1Q9HA90 598 aa14.63□□□□□ -0.07
LIMCH1-213ENST00000511496 PABPN1Q86U42 306 aaKnown RBP eCLIP14.62□□□□□ -0.07
LIMCH1-213ENST00000511496 ZGPATQ8N5A5 531 aaKnown RBP14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms