RNA–Protein interactions for RNA: ENST00000509876.5

PHF3-210, Transcript of PHD finger protein 3, humanhuman

TSL 1 (best)

Gene PHF3, Length 7,124 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-210ENST00000509876 NGLY1Q96IV0 654 aa6.57□□□□□ -1.36
PHF3-210ENST00000509876 KRT28Q7Z3Y7 464 aa6.56□□□□□ -1.36
PHF3-210ENST00000509876 WASHC2AQ641Q2 1341 aa6.56□□□□□ -1.36
PHF3-210ENST00000509876 CASC1Q6TDU7 716 aa6.56□□□□□ -1.36
PHF3-210ENST00000509876 SPG7Q9UQ90 795 aa6.56□□□□□ -1.36
PHF3-210ENST00000509876 G3V3G9 751 aa6.56□□□□□ -1.36
PHF3-210ENST00000509876 DCAF8Q5TAQ9 597 aa6.56□□□□□ -1.36
PHF3-210ENST00000509876 C19orf44Q9H6X5 657 aa6.56□□□□□ -1.36
PHF3-210ENST00000509876 CCDC7Q96M83 1385 aa6.56□□□□□ -1.36
PHF3-210ENST00000509876 NPHP3Q7Z494 1330 aa6.56□□□□□ -1.36
PHF3-210ENST00000509876 SCAF11Q99590 1463 aaKnown RBP6.56□□□□□ -1.36
PHF3-210ENST00000509876 CCDC146Q8IYE0 955 aa6.56□□□□□ -1.36
PHF3-210ENST00000509876 FKBP8Q14318 412 aa6.55□□□□□ -1.36
PHF3-210ENST00000509876 ADAMTS2O95450 1211 aa6.55□□□□□ -1.36
PHF3-210ENST00000509876 TBX22Q9Y458 520 aa6.55□□□□□ -1.36
PHF3-210ENST00000509876 RPRD2Q5VT52 1461 aaKnown RBP6.55□□□□□ -1.36
PHF3-210ENST00000509876 KIF7Q2M1P5 1343 aa6.55□□□□□ -1.36
PHF3-210ENST00000509876 ABCA9Q8IUA7 1624 aa6.55□□□□□ -1.36
PHF3-210ENST00000509876 NINLQ9Y2I6 1382 aa6.55□□□□□ -1.36
PHF3-210ENST00000509876 TAF7LQ5H9L4 462 aa6.55□□□□□ -1.36
PHF3-210ENST00000509876 GAS2L2Q8NHY3 880 aa6.55□□□□□ -1.36
PHF3-210ENST00000509876 RBM33Q96EV2 1170 aaKnown RBP6.55□□□□□ -1.36
PHF3-210ENST00000509876 PTPRKQ15262 1439 aa6.55□□□□□ -1.36
PHF3-210ENST00000509876 KCNA6P17658 529 aa6.55□□□□□ -1.36
PHF3-210ENST00000509876 EIF2AK4Q9P2K8 1649 aaKnown RBP6.55□□□□□ -1.36
PHF3-210ENST00000509876 HSP90AB1P08238 724 aaKnown RBP6.54□□□□□ -1.36
PHF3-210ENST00000509876 FOXO3O43524 673 aa6.54□□□□□ -1.36
PHF3-210ENST00000509876 SLC12A5Q9H2X9 1139 aa6.54□□□□□ -1.36
PHF3-210ENST00000509876 NLRP1Q9C000 1473 aa6.54□□□□□ -1.36
PHF3-210ENST00000509876 NBPF8Q3BBV2 869 aa6.53□□□□□ -1.36
PHF3-210ENST00000509876 TMEM2Q9UHN6 1383 aa6.53□□□□□ -1.36
PHF3-210ENST00000509876 GLI2P10070 1586 aa6.53□□□□□ -1.36
PHF3-210ENST00000509876 ZC3H6P61129 1189 aaKnown RBP6.53□□□□□ -1.36
PHF3-210ENST00000509876 CHMP3Q9Y3E7 222 aa6.53□□□□□ -1.36
PHF3-210ENST00000509876 NGEFQ8N5V2 710 aa6.53□□□□□ -1.36
PHF3-210ENST00000509876 KLHL34Q8N239 644 aa6.52□□□□□ -1.36
PHF3-210ENST00000509876 LRRC59Q96AG4 307 aaKnown RBP6.52□□□□□ -1.36
PHF3-210ENST00000509876 UGGT1Q9NYU2 1555 aa6.52□□□□□ -1.37
PHF3-210ENST00000509876 NPHP4O75161 1426 aaPredicted RBP6.52□□□□□ -1.37
PHF3-210ENST00000509876 NEXNQ0ZGT2 675 aa6.52□□□□□ -1.37
PHF3-210ENST00000509876 RUNDC1Q96C34 613 aa6.52□□□□□ -1.37
PHF3-210ENST00000509876 MBD5Q9P267 1494 aa6.52□□□□□ -1.37
PHF3-210ENST00000509876 DDX58O95786 925 aaKnown RBP6.52□□□□□ -1.37
PHF3-210ENST00000509876 HSP90AA1P07900 732 aaKnown RBP6.52□□□□□ -1.37
PHF3-210ENST00000509876 TRPM2O94759 1503 aa6.52□□□□□ -1.37
PHF3-210ENST00000509876 HMOX1P09601 288 aa6.52□□□□□ -1.37
PHF3-210ENST00000509876 RIPK4P57078 832 aa6.52□□□□□ -1.37
PHF3-210ENST00000509876 SMC4Q9NTJ3 1288 aa6.52□□□□□ -1.37
PHF3-210ENST00000509876 EFCAB6Q5THR3 1501 aa6.51□□□□□ -1.37
PHF3-210ENST00000509876 DDX54Q8TDD1 881 aaKnown RBP6.51□□□□□ -1.37
PHF3-210ENST00000509876 CABP4P57796 275 aa6.51□□□□□ -1.37
PHF3-210ENST00000509876 RRP7AQ9Y3A4 280 aaKnown RBP6.51□□□□□ -1.37
PHF3-210ENST00000509876 NSD3Q9BZ95 1437 aa6.51□□□□□ -1.37
PHF3-210ENST00000509876 GTF3C3Q9Y5Q9 886 aa6.51□□□□□ -1.37
PHF3-210ENST00000509876 TTC21AQ8NDW8 1320 aa6.51□□□□□ -1.37
PHF3-210ENST00000509876 RBM42Q9BTD8 480 aaKnown RBP6.5□□□□□ -1.37
PHF3-210ENST00000509876 TSPYL4Q9UJ04 414 aa6.5□□□□□ -1.37
PHF3-210ENST00000509876 MTHFSP49914 203 aa6.5□□□□□ -1.37
PHF3-210ENST00000509876 EIF2S2P20042 333 aaKnown RBP6.5□□□□□ -1.37
PHF3-210ENST00000509876 GNAI1P63096 354 aa6.5□□□□□ -1.37
PHF3-210ENST00000509876 PNISRQ8TF01 805 aaKnown RBP6.5□□□□□ -1.37
PHF3-210ENST00000509876 GORABQ5T7V8 394 aa6.5□□□□□ -1.37
PHF3-210ENST00000509876 ITPRIPQ8IWB1 547 aa6.5□□□□□ -1.37
PHF3-210ENST00000509876 PRKRIP1Q9H875 184 aaPredicted RBP6.5□□□□□ -1.37
PHF3-210ENST00000509876 DIP2BQ9P265 1576 aa6.5□□□□□ -1.37
PHF3-210ENST00000509876 ACEP12821 1306 aa6.5□□□□□ -1.37
PHF3-210ENST00000509876 SLC4A10Q6U841 1118 aa6.49□□□□□ -1.37
PHF3-210ENST00000509876 ZNF530Q6P9A1 599 aaPredicted RBP6.49□□□□□ -1.37
PHF3-210ENST00000509876 C8orf37Q96NL8 207 aa6.49□□□□□ -1.37
PHF3-210ENST00000509876 NPATQ14207 1427 aa6.49□□□□□ -1.37
PHF3-210ENST00000509876 PPIP5K1Q6PFW1 1433 aa6.49□□□□□ -1.37
PHF3-210ENST00000509876 YTHDC2Q9H6S0 1430 aaKnown RBP6.49□□□□□ -1.37
PHF3-210ENST00000509876 E9PSI1 815 aa6.49□□□□□ -1.37
PHF3-210ENST00000509876 KIF6Q6ZMV9 814 aa6.49□□□□□ -1.37
PHF3-210ENST00000509876 HSP90B1P14625 803 aaKnown RBP6.49□□□□□ -1.37
PHF3-210ENST00000509876 PLEKHG1Q9ULL1 1385 aa6.49□□□□□ -1.37
PHF3-210ENST00000509876 GCC2Q8IWJ2 1684 aa6.49□□□□□ -1.37
PHF3-210ENST00000509876 ERVK-7P63135 1459 aa6.49□□□□□ -1.37
PHF3-210ENST00000509876 PLXNC1O60486 1568 aa6.49□□□□□ -1.37
PHF3-210ENST00000509876 HMMRO75330 724 aa6.49□□□□□ -1.37
PHF3-210ENST00000509876 ANP32AP39687 249 aaKnown RBP6.49□□□□□ -1.37
PHF3-210ENST00000509876 CDC42BPAQ5VT25 1732 aa6.49□□□□□ -1.37
PHF3-210ENST00000509876 GPATCH3Q96I76 525 aa6.49□□□□□ -1.37
PHF3-210ENST00000509876 NSD2O96028 1365 aa6.48□□□□□ -1.37
PHF3-210ENST00000509876 PZPP20742 1482 aa6.48□□□□□ -1.37
PHF3-210ENST00000509876 RRS1Q15050 365 aaKnown RBP6.48□□□□□ -1.37
PHF3-210ENST00000509876 EXOC5O00471 708 aa6.48□□□□□ -1.37
PHF3-210ENST00000509876 PPP2R1AP30153 589 aa6.48□□□□□ -1.37
PHF3-210ENST00000509876 ARHGEF12Q9NZN5 1544 aa6.48□□□□□ -1.37
PHF3-210ENST00000509876 KDM5CP41229 1560 aa6.48□□□□□ -1.37
PHF3-210ENST00000509876 IRX6P78412 446 aaPredicted RBP6.47□□□□□ -1.37
PHF3-210ENST00000509876 SULT6B1Q6IMI4 303 aa6.47□□□□□ -1.37
PHF3-210ENST00000509876 PRAG1Q86YV5 1406 aa6.47□□□□□ -1.37
PHF3-210ENST00000509876 AMOTQ4VCS5 1084 aa6.47□□□□□ -1.37
PHF3-210ENST00000509876 NME9Q86XW9 330 aa6.47□□□□□ -1.37
PHF3-210ENST00000509876 ABCC3O15438 1527 aa6.47□□□□□ -1.37
PHF3-210ENST00000509876 RALGAPBQ86X10 1494 aa6.47□□□□□ -1.37
PHF3-210ENST00000509876 BRD4O60885 1362 aaPredicted RBP6.47□□□□□ -1.37
PHF3-210ENST00000509876 PRKAR2BP31323 418 aa6.47□□□□□ -1.37
PHF3-210ENST00000509876 CFAP44Q96MT7 982 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms