RNA–Protein interactions for RNA: ENST00000509429.1

NIPBL-206, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 3

Gene NIPBL, Length 586 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-206ENST00000509429 PSMG3-AS1Q96PY0 264 aa10.42□□□□□ -0.74
NIPBL-206ENST00000509429 KRTAP9-6A0A140TA67 174 aa10.41□□□□□ -0.74
NIPBL-206ENST00000509429 DNMT3AQ9Y6K1 912 aaPredicted RBP10.41□□□□□ -0.74
NIPBL-206ENST00000509429 ARIH1Q9Y4X5 557 aaPredicted RBP10.39□□□□□ -0.75
NIPBL-206ENST00000509429 FMNL1O95466 1100 aaPredicted RBP10.38□□□□□ -0.75
NIPBL-206ENST00000509429 PRDM9Q9NQV7 894 aa10.38□□□□□ -0.75
NIPBL-206ENST00000509429 ADAMTS8Q9UP79 889 aa10.37□□□□□ -0.75
NIPBL-206ENST00000509429 ADGRG1Q9Y653 693 aa10.37□□□□□ -0.75
NIPBL-206ENST00000509429 CAPN5O15484 640 aaPredicted RBP10.36□□□□□ -0.75
NIPBL-206ENST00000509429 FOXK2Q01167 660 aa10.36□□□□□ -0.75
NIPBL-206ENST00000509429 MORN1Q5T089 497 aa10.36□□□□□ -0.75
NIPBL-206ENST00000509429 RSPH4AQ5TD94 716 aa10.35□□□□□ -0.75
NIPBL-206ENST00000509429 ALDH1A1P00352 501 aa10.33□□□□□ -0.76
NIPBL-206ENST00000509429 RC3H1Q5TC82 1133 aaKnown RBP10.33□□□□□ -0.76
NIPBL-206ENST00000509429 KRTAP1-3Q8IUG1 177 aa10.33□□□□□ -0.76
NIPBL-206ENST00000509429 ZFP42Q96MM3 310 aa10.33□□□□□ -0.76
NIPBL-206ENST00000509429 SALL2Q9Y467 1007 aaPredicted RBP10.32□□□□□ -0.76
NIPBL-206ENST00000509429 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.31□□□□□ -0.76
NIPBL-206ENST00000509429 MSS51Q4VC12 460 aa10.31□□□□□ -0.76
NIPBL-206ENST00000509429 ADAM23O75077 832 aa10.3□□□□□ -0.76
NIPBL-206ENST00000509429 FECHP22830 423 aa10.28□□□□□ -0.76
NIPBL-206ENST00000509429 E2F4Q16254 413 aa10.28□□□□□ -0.76
NIPBL-206ENST00000509429 BRICD5Q6PL45 260 aa10.28□□□□□ -0.76
NIPBL-206ENST00000509429 SLC27A5Q9Y2P5 690 aa10.28□□□□□ -0.76
NIPBL-206ENST00000509429 IRS1P35568 1242 aa10.26□□□□□ -0.77
NIPBL-206ENST00000509429 ATP6V1AP38606 617 aa10.26□□□□□ -0.77
NIPBL-206ENST00000509429 WNT7BP56706 349 aa10.26□□□□□ -0.77
NIPBL-206ENST00000509429 SKOR1P84550 965 aa10.25□□□□□ -0.77
NIPBL-206ENST00000509429 FAM161AQ3B820 660 aa10.25□□□□□ -0.77
NIPBL-206ENST00000509429 FUT2Q10981 343 aa10.24□□□□□ -0.77
NIPBL-206ENST00000509429 PTGDRQ13258 359 aa10.24□□□□□ -0.77
NIPBL-206ENST00000509429 KANK3Q6NY19 840 aa10.23□□□□□ -0.77
NIPBL-206ENST00000509429 WASF2Q9Y6W5 498 aa10.22□□□□□ -0.77
NIPBL-206ENST00000509429 MMP16P51512 607 aa10.21□□□□□ -0.77
NIPBL-206ENST00000509429 SOBPA7XYQ1 873 aa10.19□□□□□ -0.78
NIPBL-206ENST00000509429 SIAH2O43255 324 aa10.18□□□□□ -0.78
NIPBL-206ENST00000509429 SCARF1Q14162 830 aa10.18□□□□□ -0.78
NIPBL-206ENST00000509429 RNF19BQ6ZMZ0 732 aa10.18□□□□□ -0.78
NIPBL-206ENST00000509429 PPFIA3O75145 1194 aa10.16□□□□□ -0.78
NIPBL-206ENST00000509429 KRT76Q01546 638 aa10.16□□□□□ -0.78
NIPBL-206ENST00000509429 MRPL14Q6P1L8 145 aaKnown RBP10.16□□□□□ -0.78
NIPBL-206ENST00000509429 MSTNO14793 375 aa10.15□□□□□ -0.78
NIPBL-206ENST00000509429 CNTNAP3BQ96NU0 1288 aa10.15□□□□□ -0.78
NIPBL-206ENST00000509429 CNTNAP3Q9BZ76 1288 aa10.15□□□□□ -0.78
NIPBL-206ENST00000509429 ZNF385CQ66K41 422 aaPredicted RBP10.14□□□□□ -0.79
NIPBL-206ENST00000509429 Q8N3U1 123 aa10.14□□□□□ -0.79
NIPBL-206ENST00000509429 RDH13Q8NBN7 331 aa10.14□□□□□ -0.79
NIPBL-206ENST00000509429 PXYLP1Q8TE99 480 aa10.14□□□□□ -0.79
NIPBL-206ENST00000509429 PURBQ96QR8 312 aaKnown RBP10.14□□□□□ -0.79
NIPBL-206ENST00000509429 OATP04181 439 aa10.13□□□□□ -0.79
NIPBL-206ENST00000509429 SVOPQ8N4V2 548 aa10.13□□□□□ -0.79
NIPBL-206ENST00000509429 DXOO77932 396 aaKnown RBP10.11□□□□□ -0.79
NIPBL-206ENST00000509429 MARSP56192 900 aaKnown RBP10.11□□□□□ -0.79
NIPBL-206ENST00000509429 LCE3BQ5TA77 95 aa10.11□□□□□ -0.79
NIPBL-206ENST00000509429 CCDC24Q8N4L8 307 aa10.11□□□□□ -0.79
NIPBL-206ENST00000509429 EHBP1Q8NDI1 1231 aa10.11□□□□□ -0.79
NIPBL-206ENST00000509429 SCARF2Q96GP6 870 aaPredicted RBP10.1□□□□□ -0.79
NIPBL-206ENST00000509429 MAN1A2O60476 641 aa10.08□□□□□ -0.8
NIPBL-206ENST00000509429 ARHGEF15O94989 841 aa10.08□□□□□ -0.8
NIPBL-206ENST00000509429 GCGRP47871 477 aa10.08□□□□□ -0.8
NIPBL-206ENST00000509429 Q3C1V9 767 aa10.08□□□□□ -0.8
NIPBL-206ENST00000509429 GPR161Q8N6U8 529 aaKnown RBP10.08□□□□□ -0.8
NIPBL-206ENST00000509429 SPOCK3Q9BQ16 436 aa10.08□□□□□ -0.8
NIPBL-206ENST00000509429 PLA2G4EQ3MJ16 856 aa10.05□□□□□ -0.8
NIPBL-206ENST00000509429 GRIPAP1Q4V328 841 aa10.05□□□□□ -0.8
NIPBL-206ENST00000509429 DAXXQ9UER7 740 aaPredicted RBP10.05□□□□□ -0.8
NIPBL-206ENST00000509429 DDX11L8A8MPP1 907 aa10.03□□□□□ -0.8
NIPBL-206ENST00000509429 USB1Q9BQ65 265 aaKnown RBP10.03□□□□□ -0.8
NIPBL-206ENST00000509429 METTL3Q86U44 580 aaKnown RBP10.02□□□□□ -0.81
NIPBL-206ENST00000509429 WHAMMQ8TF30 809 aa10.02□□□□□ -0.81
NIPBL-206ENST00000509429 COL25A1Q9BXS0 654 aaPredicted RBP10.02□□□□□ -0.81
NIPBL-206ENST00000509429 WDR70Q9NW82 654 aa10.02□□□□□ -0.81
NIPBL-206ENST00000509429 K7ELQ4 463 aaPredicted RBP10.01□□□□□ -0.81
NIPBL-206ENST00000509429 SLURP2P0DP57 97 aa10□□□□□ -0.81
NIPBL-206ENST00000509429 NUTM2FA1L443 756 aa9.98□□□□□ -0.81
NIPBL-206ENST00000509429 TIMP2P16035 220 aa9.98□□□□□ -0.81
NIPBL-206ENST00000509429 MLLT3P42568 568 aaPredicted RBP9.98□□□□□ -0.81
NIPBL-206ENST00000509429 NNTQ13423 1086 aa9.98□□□□□ -0.81
NIPBL-206ENST00000509429 KRTAP4-12Q9BQ66 201 aa9.98□□□□□ -0.81
NIPBL-206ENST00000509429 PROCP04070 461 aa9.97□□□□□ -0.81
NIPBL-206ENST00000509429 FCHSD2O94868 740 aa9.96□□□□□ -0.82
NIPBL-206ENST00000509429 ADH1CP00326 375 aa9.96□□□□□ -0.82
NIPBL-206ENST00000509429 ITGB2P05107 769 aa9.96□□□□□ -0.82
NIPBL-206ENST00000509429 WDR4P57081 412 aaKnown RBP9.96□□□□□ -0.82
NIPBL-206ENST00000509429 SULF1Q8IWU6 871 aa9.96□□□□□ -0.82
NIPBL-206ENST00000509429 GALNT6Q8NCL4 622 aa9.96□□□□□ -0.82
NIPBL-206ENST00000509429 PLEKHG3A1L390 1219 aa9.95□□□□□ -0.82
NIPBL-206ENST00000509429 BTBD11A6QL63 1104 aa9.95□□□□□ -0.82
NIPBL-206ENST00000509429 RNFT1Q5M7Z0 435 aa9.95□□□□□ -0.82
NIPBL-206ENST00000509429 DCAF5Q96JK2 942 aa9.95□□□□□ -0.82
NIPBL-206ENST00000509429 KRTAP9-9Q9BYP9 154 aa9.94□□□□□ -0.82
NIPBL-206ENST00000509429 KRTAP9-4Q9BYQ2 154 aa9.94□□□□□ -0.82
NIPBL-206ENST00000509429 SH3BP2P78314 561 aa9.93□□□□□ -0.82
NIPBL-206ENST00000509429 TLL2Q9Y6L7 1015 aa9.93□□□□□ -0.82
NIPBL-206ENST00000509429 C6orf118Q5T5N4 469 aa9.92□□□□□ -0.82
NIPBL-206ENST00000509429 MPNDQ8N594 471 aa9.92□□□□□ -0.82
NIPBL-206ENST00000509429 NANOS1Q8WY41 292 aaKnown RBP9.92□□□□□ -0.82
NIPBL-206ENST00000509429 KLF16Q9BXK1 252 aaPredicted RBP9.92□□□□□ -0.82
NIPBL-206ENST00000509429 PTCRAQ6ISU1 281 aaPredicted RBP9.91□□□□□ -0.82
NIPBL-206ENST00000509429 KRTAP4-8A0A0G2JLE6 195 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms