RNA–Protein interactions for RNA: ENST00000509009.5

PDPN-208, Transcript of podoplanin, humanhuman

TSL 4 BASIC

Gene PDPN, Length 571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-208ENST00000509009 SIRT1Q96EB6 747 aa18.46■□□□□ 0.55
PDPN-208ENST00000509009 PNPLA6Q8IY17 1366 aa18.45■□□□□ 0.54
PDPN-208ENST00000509009 HRCP23327 699 aa18.45■□□□□ 0.54
PDPN-208ENST00000509009 ESCO1Q5FWF5 840 aa18.45■□□□□ 0.54
PDPN-208ENST00000509009 CFAP70Q5T0N1 1121 aa18.45■□□□□ 0.54
PDPN-208ENST00000509009 TECPR2O15040 1411 aa18.45■□□□□ 0.54
PDPN-208ENST00000509009 PIK3C2GO75747 1445 aa18.45■□□□□ 0.54
PDPN-208ENST00000509009 AFF2P51816 1311 aa18.43■□□□□ 0.54
PDPN-208ENST00000509009 PLEKHH1Q9ULM0 1364 aa18.42■□□□□ 0.54
PDPN-208ENST00000509009 YTHDC2Q9H6S0 1430 aaKnown RBP18.42■□□□□ 0.54
PDPN-208ENST00000509009 RXRBP28702 533 aa18.42■□□□□ 0.54
PDPN-208ENST00000509009 IFT172Q9UG01 1749 aa18.41■□□□□ 0.54
PDPN-208ENST00000509009 NUTM2FA1L443 756 aa18.41■□□□□ 0.54
PDPN-208ENST00000509009 FOXO3O43524 673 aa18.41■□□□□ 0.54
PDPN-208ENST00000509009 C8orf37Q96NL8 207 aa18.4■□□□□ 0.54
PDPN-208ENST00000509009 ADAMTS2O95450 1211 aa18.39■□□□□ 0.53
PDPN-208ENST00000509009 NGLY1Q96IV0 654 aa18.39■□□□□ 0.53
PDPN-208ENST00000509009 NPHP3Q7Z494 1330 aa18.39■□□□□ 0.53
PDPN-208ENST00000509009 DHX57Q6P158 1386 aaKnown RBP18.39■□□□□ 0.53
PDPN-208ENST00000509009 NRXN1Q9ULB1 1477 aa18.39■□□□□ 0.53
PDPN-208ENST00000509009 LAMC1P11047 1609 aa18.38■□□□□ 0.53
PDPN-208ENST00000509009 QTRT2Q9H974 415 aaKnown RBP18.38■□□□□ 0.53
PDPN-208ENST00000509009 XPCQ01831 940 aaPredicted RBP18.37■□□□□ 0.53
PDPN-208ENST00000509009 KDM2AQ9Y2K7 1162 aa18.37■□□□□ 0.53
PDPN-208ENST00000509009 CDC42BPGQ6DT37 1551 aa18.37■□□□□ 0.53
PDPN-208ENST00000509009 MYOM2P54296 1465 aa18.36■□□□□ 0.53
PDPN-208ENST00000509009 DCAF11Q8TEB1 546 aa18.35■□□□□ 0.53
PDPN-208ENST00000509009 PRAM1Q96QH2 718 aa18.35■□□□□ 0.53
PDPN-208ENST00000509009 STAC3Q96MF2 364 aa18.34■□□□□ 0.53
PDPN-208ENST00000509009 RBM6P78332 1123 aaKnown RBP18.33■□□□□ 0.52
PDPN-208ENST00000509009 SAFB2Q14151 953 aaKnown RBP eCLIP18.33■□□□□ 0.52
PDPN-208ENST00000509009 FNBP4Q8N3X1 1017 aaPredicted RBP18.32■□□□□ 0.52
PDPN-208ENST00000509009 POGKQ9P215 609 aa18.32■□□□□ 0.52
PDPN-208ENST00000509009 PXDNQ92626 1479 aa18.32■□□□□ 0.52
PDPN-208ENST00000509009 KRT28Q7Z3Y7 464 aa18.31■□□□□ 0.52
PDPN-208ENST00000509009 UPF1Q92900 1129 aaKnown RBP eCLIP18.31■□□□□ 0.52
PDPN-208ENST00000509009 KNDC1Q76NI1 1749 aa18.31■□□□□ 0.52
PDPN-208ENST00000509009 USP21Q9UK80 565 aa18.3■□□□□ 0.52
PDPN-208ENST00000509009 PHF8Q9UPP1 1060 aa18.3■□□□□ 0.52
PDPN-208ENST00000509009 TRAK1Q9UPV9 953 aa18.3■□□□□ 0.52
PDPN-208ENST00000509009 CDK12Q9NYV4 1490 aaPredicted RBP18.29■□□□□ 0.52
PDPN-208ENST00000509009 SPATA31A3Q5VYP0 1347 aa18.28■□□□□ 0.52
PDPN-208ENST00000509009 PSME1Q06323 249 aa18.26■□□□□ 0.51
PDPN-208ENST00000509009 TRPC5Q9UL62 973 aaPredicted RBP18.26■□□□□ 0.51
PDPN-208ENST00000509009 FMN2Q9NZ56 1722 aa18.26■□□□□ 0.51
PDPN-208ENST00000509009 DLC1Q96QB1 1528 aa18.25■□□□□ 0.51
PDPN-208ENST00000509009 COL22A1Q8NFW1 1626 aaPredicted RBP18.25■□□□□ 0.51
PDPN-208ENST00000509009 ADGRB1O14514 1584 aa18.25■□□□□ 0.51
PDPN-208ENST00000509009 HIRIP3Q9BW71 556 aaPredicted RBP18.24■□□□□ 0.51
PDPN-208ENST00000509009 MINK1Q8N4C8 1332 aaPredicted RBP18.23■□□□□ 0.51
PDPN-208ENST00000509009 PMFBP1Q8TBY8 1022 aa18.23■□□□□ 0.51
PDPN-208ENST00000509009 WASLO00401 505 aaPredicted RBP18.21■□□□□ 0.51
PDPN-208ENST00000509009 RGS12O14924 1447 aa18.21■□□□□ 0.51
PDPN-208ENST00000509009 BCL9LQ86UU0 1499 aa18.2■□□□□ 0.5
PDPN-208ENST00000509009 CABLES1Q8TDN4 633 aa18.2■□□□□ 0.5
PDPN-208ENST00000509009 ATRNO75882 1429 aa18.2■□□□□ 0.5
PDPN-208ENST00000509009 SBNO1A3KN83 1393 aa18.19■□□□□ 0.5
PDPN-208ENST00000509009 ANKARQ7Z5J8 1434 aa18.19■□□□□ 0.5
PDPN-208ENST00000509009 RGPD8O14715 1765 aaPredicted RBP18.19■□□□□ 0.5
PDPN-208ENST00000509009 PRR36Q9H6K5 1346 aa18.19■□□□□ 0.5
PDPN-208ENST00000509009 KIF1AQ12756 1690 aa18.18■□□□□ 0.5
PDPN-208ENST00000509009 LMOD2Q6P5Q4 547 aa18.18■□□□□ 0.5
PDPN-208ENST00000509009 UNC5CLQ8IV45 518 aa18.17■□□□□ 0.5
PDPN-208ENST00000509009 GJD4Q96KN9 370 aaPredicted RBP18.17■□□□□ 0.5
PDPN-208ENST00000509009 TNS3Q68CZ2 1445 aa18.16■□□□□ 0.5
PDPN-208ENST00000509009 PLEKHG5O94827 1062 aa18.16■□□□□ 0.5
PDPN-208ENST00000509009 HAP1P54257 671 aaPredicted RBP18.15■□□□□ 0.5
PDPN-208ENST00000509009 NBPF1Q3BBV0 1214 aa18.15■□□□□ 0.5
PDPN-208ENST00000509009 ARHGEF10O15013 1369 aa18.14■□□□□ 0.49
PDPN-208ENST00000509009 EIF3AQ14152 1382 aaKnown RBP18.14■□□□□ 0.49
PDPN-208ENST00000509009 ADGRB2O60241 1585 aa18.13■□□□□ 0.49
PDPN-208ENST00000509009 USP32Q8NFA0 1604 aa18.13■□□□□ 0.49
PDPN-208ENST00000509009 NGDNQ8NEJ9 315 aaKnown RBP18.13■□□□□ 0.49
PDPN-208ENST00000509009 NUDT16Q96DE0 195 aaKnown RBP18.13■□□□□ 0.49
PDPN-208ENST00000509009 SLIT2O94813 1529 aa18.13■□□□□ 0.49
PDPN-208ENST00000509009 FAM83GA6ND36 823 aa18.12■□□□□ 0.49
PDPN-208ENST00000509009 CDK19Q9BWU1 502 aa18.12■□□□□ 0.49
PDPN-208ENST00000509009 GPRASP1Q5JY77 1395 aa18.12■□□□□ 0.49
PDPN-208ENST00000509009 MARF1Q9Y4F3 1742 aaKnown RBP18.1■□□□□ 0.49
PDPN-208ENST00000509009 TULP4Q9NRJ4 1543 aa18.09■□□□□ 0.49
PDPN-208ENST00000509009 ATAD2Q6PL18 1390 aa18.09■□□□□ 0.49
PDPN-208ENST00000509009 VPS72Q15906 364 aa18.08■□□□□ 0.48
PDPN-208ENST00000509009 L3MBTL2Q969R5 705 aa18.08■□□□□ 0.48
PDPN-208ENST00000509009 PAK3O75914 559 aaPredicted RBP18.07■□□□□ 0.48
PDPN-208ENST00000509009 SIN3AQ96ST3 1273 aa18.07■□□□□ 0.48
PDPN-208ENST00000509009 RALGAPBQ86X10 1494 aa18.07■□□□□ 0.48
PDPN-208ENST00000509009 ONECUT3O60422 494 aaPredicted RBP18.06■□□□□ 0.48
PDPN-208ENST00000509009 CCDC61Q9Y6R9 512 aa18.06■□□□□ 0.48
PDPN-208ENST00000509009 PLEKHG3A1L390 1219 aa18.05■□□□□ 0.48
PDPN-208ENST00000509009 NBPF8Q3BBV2 869 aa18.05■□□□□ 0.48
PDPN-208ENST00000509009 SEPT12Q8IYM1 358 aa18.04■□□□□ 0.48
PDPN-208ENST00000509009 ARHGEF28Q8N1W1 1705 aaKnown RBP18.03■□□□□ 0.48
PDPN-208ENST00000509009 CCDC125Q86Z20 511 aa18.03■□□□□ 0.48
PDPN-208ENST00000509009 BTG4Q9NY30 223 aa18.03■□□□□ 0.48
PDPN-208ENST00000509009 CCDC9Q9Y3X0 531 aaKnown RBP18.03■□□□□ 0.48
PDPN-208ENST00000509009 TRPM3Q9HCF6 1732 aaPredicted RBP18.03■□□□□ 0.48
PDPN-208ENST00000509009 ACEP12821 1306 aa18.02■□□□□ 0.48
PDPN-208ENST00000509009 ATP7BP35670 1465 aa18.02■□□□□ 0.48
PDPN-208ENST00000509009 GLI3P10071 1580 aa18.02■□□□□ 0.48
PDPN-208ENST00000509009 NEUROD1Q13562 356 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms