RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 PHOX2BQ99453 314 aa9.35□□□□□ -0.91
NUP54-206ENST00000508465 PRDM9Q9NQV7 894 aa9.34□□□□□ -0.91
NUP54-206ENST00000508465 C11orf95C9JLR9 678 aaPredicted RBP9.33□□□□□ -0.92
NUP54-206ENST00000508465 SMCPP49901 116 aaPredicted RBP9.33□□□□□ -0.92
NUP54-206ENST00000508465 RNF19BQ6ZMZ0 732 aa9.33□□□□□ -0.92
NUP54-206ENST00000508465 WNT7AO00755 349 aa9.31□□□□□ -0.92
NUP54-206ENST00000508465 SNIP1Q8TAD8 396 aaKnown RBP9.31□□□□□ -0.92
NUP54-206ENST00000508465 DACH1Q9UI36 760 aa9.31□□□□□ -0.92
NUP54-206ENST00000508465 MMP16P51512 607 aa9.3□□□□□ -0.92
NUP54-206ENST00000508465 GMPR2Q9P2T1 348 aaKnown RBP9.3□□□□□ -0.92
NUP54-206ENST00000508465 TULP1O00294 542 aaPredicted RBP9.29□□□□□ -0.92
NUP54-206ENST00000508465 KDM4AO75164 1064 aa9.29□□□□□ -0.92
NUP54-206ENST00000508465 CD46P15529 392 aa9.29□□□□□ -0.92
NUP54-206ENST00000508465 TRIM32Q13049 653 aa9.29□□□□□ -0.92
NUP54-206ENST00000508465 USB1Q9BQ65 265 aaKnown RBP9.29□□□□□ -0.92
NUP54-206ENST00000508465 WFS1O76024 890 aa9.28□□□□□ -0.92
NUP54-206ENST00000508465 USP46P62068 366 aa9.27□□□□□ -0.93
NUP54-206ENST00000508465 MAP2K5Q13163 448 aa9.27□□□□□ -0.93
NUP54-206ENST00000508465 REPIN1Q9BWE0 567 aaKnown RBP9.27□□□□□ -0.93
NUP54-206ENST00000508465 LCE2AQ5TA79 106 aaPredicted RBP9.26□□□□□ -0.93
NUP54-206ENST00000508465 SMPD1P17405 629 aa9.25□□□□□ -0.93
NUP54-206ENST00000508465 CCDC24Q8N4L8 307 aa9.25□□□□□ -0.93
NUP54-206ENST00000508465 MRGPRX2Q96LB1 330 aa9.25□□□□□ -0.93
NUP54-206ENST00000508465 DXOO77932 396 aaKnown RBP9.24□□□□□ -0.93
NUP54-206ENST00000508465 SENP2Q9HC62 589 aa9.24□□□□□ -0.93
NUP54-206ENST00000508465 IRF6O14896 467 aa9.23□□□□□ -0.93
NUP54-206ENST00000508465 HAP1P54257 671 aaPredicted RBP9.23□□□□□ -0.93
NUP54-206ENST00000508465 ATP13A2Q9NQ11 1180 aa9.23□□□□□ -0.93
NUP54-206ENST00000508465 MDM2Q00987 491 aaPredicted RBP9.22□□□□□ -0.93
NUP54-206ENST00000508465 MINK1Q8N4C8 1332 aaPredicted RBP9.22□□□□□ -0.93
NUP54-206ENST00000508465 J3QL48 77 aa9.21□□□□□ -0.94
NUP54-206ENST00000508465 WNT7BP56706 349 aa9.2□□□□□ -0.94
NUP54-206ENST00000508465 RC3H1Q5TC82 1133 aaKnown RBP9.2□□□□□ -0.94
NUP54-206ENST00000508465 HOXA2O43364 376 aa9.19□□□□□ -0.94
NUP54-206ENST00000508465 KRI1Q8N9T8 703 aaKnown RBP9.19□□□□□ -0.94
NUP54-206ENST00000508465 KIFC2Q96AC6 838 aa9.19□□□□□ -0.94
NUP54-206ENST00000508465 INSM1Q01101 510 aaPredicted RBP9.18□□□□□ -0.94
NUP54-206ENST00000508465 NFX1Q12986 1120 aaKnown RBP9.18□□□□□ -0.94
NUP54-206ENST00000508465 TRIM47Q96LD4 638 aa9.18□□□□□ -0.94
NUP54-206ENST00000508465 CLCN1P35523 988 aa9.17□□□□□ -0.94
NUP54-206ENST00000508465 NUTM1Q86Y26 1132 aa9.17□□□□□ -0.94
NUP54-206ENST00000508465 HPS1Q92902 700 aa9.17□□□□□ -0.94
NUP54-206ENST00000508465 HLA-CQ95604 372 aa9.17□□□□□ -0.94
NUP54-206ENST00000508465 GPCPD1Q9NPB8 672 aa9.17□□□□□ -0.94
NUP54-206ENST00000508465 SNRPBP14678 240 aaKnown RBP9.16□□□□□ -0.94
NUP54-206ENST00000508465 JUNDP17535 347 aa9.16□□□□□ -0.94
NUP54-206ENST00000508465 STK17AQ9UEE5 414 aa9.16□□□□□ -0.94
NUP54-206ENST00000508465 WIPF1O43516 503 aa9.15□□□□□ -0.94
NUP54-206ENST00000508465 SKOR1P84550 965 aa9.15□□□□□ -0.94
NUP54-206ENST00000508465 TERTO14746 1132 aaKnown RBP9.14□□□□□ -0.95
NUP54-206ENST00000508465 ALDH1A1P00352 501 aa9.14□□□□□ -0.95
NUP54-206ENST00000508465 RETREG3Q86VR2 466 aa9.14□□□□□ -0.95
NUP54-206ENST00000508465 GUCA2AQ02747 115 aa9.13□□□□□ -0.95
NUP54-206ENST00000508465 CCDC102AQ96A19 550 aa9.13□□□□□ -0.95
NUP54-206ENST00000508465 NUDT12Q9BQG2 462 aa9.13□□□□□ -0.95
NUP54-206ENST00000508465 FAM217BQ9NTX9 383 aaPredicted RBP9.13□□□□□ -0.95
NUP54-206ENST00000508465 KDM2AQ9Y2K7 1162 aa9.13□□□□□ -0.95
NUP54-206ENST00000508465 EHBP1Q8NDI1 1231 aa9.12□□□□□ -0.95
NUP54-206ENST00000508465 SYMPKQ92797 1274 aaKnown RBP9.12□□□□□ -0.95
NUP54-206ENST00000508465 WASF2Q9Y6W5 498 aa9.11□□□□□ -0.95
NUP54-206ENST00000508465 RB1CC1Q8TDY2 1594 aa9.11□□□□□ -0.95
NUP54-206ENST00000508465 FDX1P10109 184 aa9.1□□□□□ -0.95
NUP54-206ENST00000508465 SLC16A10Q8TF71 515 aa9.1□□□□□ -0.95
NUP54-206ENST00000508465 C6orf229H3BNL8 230 aa9.09□□□□□ -0.95
NUP54-206ENST00000508465 SIAH2O43255 324 aa9.08□□□□□ -0.96
NUP54-206ENST00000508465 PTCRAQ6ISU1 281 aaPredicted RBP9.08□□□□□ -0.96
NUP54-206ENST00000508465 NACADO15069 1562 aa9.07□□□□□ -0.96
NUP54-206ENST00000508465 CAPN5O15484 640 aaPredicted RBP9.07□□□□□ -0.96
NUP54-206ENST00000508465 CCNYL3P0C7X3 344 aa9.07□□□□□ -0.96
NUP54-206ENST00000508465 MS4A1P11836 297 aa9.07□□□□□ -0.96
NUP54-206ENST00000508465 VSIG10Q8N0Z9 540 aa9.07□□□□□ -0.96
NUP54-206ENST00000508465 NXF1Q9UBU9 619 aaKnown RBP9.05□□□□□ -0.96
NUP54-206ENST00000508465 FAM181BA6NEQ2 426 aa9.04□□□□□ -0.96
NUP54-206ENST00000508465 SSTR3P32745 418 aaPredicted RBP9.04□□□□□ -0.96
NUP54-206ENST00000508465 SH3BP2P78314 561 aa9.04□□□□□ -0.96
NUP54-206ENST00000508465 PLEKHG3A1L390 1219 aa9.03□□□□□ -0.96
NUP54-206ENST00000508465 PTPRNQ16849 979 aa9.03□□□□□ -0.96
NUP54-206ENST00000508465 EVA1BQ9NVM1 165 aa9.03□□□□□ -0.96
NUP54-206ENST00000508465 PCDHGC3Q9UN70 934 aa9.03□□□□□ -0.96
NUP54-206ENST00000508465 NPAS3Q8IXF0 933 aa9.02□□□□□ -0.97
NUP54-206ENST00000508465 SPIRE2Q8WWL2 714 aa9.02□□□□□ -0.97
NUP54-206ENST00000508465 UNC93B1Q9H1C4 597 aa9.02□□□□□ -0.97
NUP54-206ENST00000508465 SPDYE5A6NIY4 337 aa9.01□□□□□ -0.97
NUP54-206ENST00000508465 IRF7Q92985 503 aa9.01□□□□□ -0.97
NUP54-206ENST00000508465 BMP1P13497 986 aa9□□□□□ -0.97
NUP54-206ENST00000508465 KCNH2Q12809 1159 aa9□□□□□ -0.97
NUP54-206ENST00000508465 TRIM46Q7Z4K8 759 aa9□□□□□ -0.97
NUP54-206ENST00000508465 PRR7Q8TB68 274 aa9□□□□□ -0.97
NUP54-206ENST00000508465 BAP1Q92560 729 aa9□□□□□ -0.97
NUP54-206ENST00000508465 NDUFV2P19404 249 aa8.99□□□□□ -0.97
NUP54-206ENST00000508465 VARSP26640 1264 aaKnown RBP8.99□□□□□ -0.97
NUP54-206ENST00000508465 TTLL12Q14166 644 aaPredicted RBP8.99□□□□□ -0.97
NUP54-206ENST00000508465 LCE2CQ5TA81 110 aa8.99□□□□□ -0.97
NUP54-206ENST00000508465 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.99□□□□□ -0.97
NUP54-206ENST00000508465 ZCCHC6Q5VYS8 1495 aaKnown RBP8.99□□□□□ -0.97
NUP54-206ENST00000508465 MTMR2Q13614 643 aa8.98□□□□□ -0.97
NUP54-206ENST00000508465 LINC01559Q495D7 138 aa8.98□□□□□ -0.97
NUP54-206ENST00000508465 DESI1Q6ICB0 168 aa8.98□□□□□ -0.97
NUP54-206ENST00000508465 MPNDQ8N594 471 aa8.98□□□□□ -0.97
NUP54-206ENST00000508465 MOXD2PA6NHM9 499 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms