RNA–Protein interactions for RNA: ENST00000508282.1

DHFR-204, Transcript of dihydrofolate reductase, humanhuman

TSL 3

Gene DHFR, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DHFR-204ENST00000508282 SLC6A16Q9GZN6 736 aa11.75□□□□□ -0.53
DHFR-204ENST00000508282 SPTLC1O15269 473 aa11.74□□□□□ -0.53
DHFR-204ENST00000508282 RNF223E7ERA6 249 aa11.73□□□□□ -0.53
DHFR-204ENST00000508282 GJA5P36382 358 aa11.73□□□□□ -0.53
DHFR-204ENST00000508282 GGCXP38435 758 aa11.73□□□□□ -0.53
DHFR-204ENST00000508282 DDRGK1Q96HY6 314 aa11.73□□□□□ -0.53
DHFR-204ENST00000508282 MSS51Q4VC12 460 aa11.72□□□□□ -0.53
DHFR-204ENST00000508282 RIC3Q7Z5B4 369 aa11.72□□□□□ -0.53
DHFR-204ENST00000508282 USB1Q9BQ65 265 aaKnown RBP11.72□□□□□ -0.53
DHFR-204ENST00000508282 PRDM9Q9NQV7 894 aa11.72□□□□□ -0.53
DHFR-204ENST00000508282 PCDHB15Q9Y5E8 787 aa11.72□□□□□ -0.53
DHFR-204ENST00000508282 PPEF1O14829 653 aaPredicted RBP11.71□□□□□ -0.53
DHFR-204ENST00000508282 LIMD1Q9UGP4 676 aa11.7□□□□□ -0.54
DHFR-204ENST00000508282 C6orf229H3BNL8 230 aa11.69□□□□□ -0.54
DHFR-204ENST00000508282 RSPH6AQ9H0K4 717 aa11.69□□□□□ -0.54
DHFR-204ENST00000508282 RGS20O76081 388 aa11.68□□□□□ -0.54
DHFR-204ENST00000508282 RETREG3Q86VR2 466 aa11.68□□□□□ -0.54
DHFR-204ENST00000508282 POLR3EQ9NVU0 708 aa11.67□□□□□ -0.54
DHFR-204ENST00000508282 CLK2P49760 499 aaKnown RBP11.66□□□□□ -0.54
DHFR-204ENST00000508282 MMP16P51512 607 aa11.66□□□□□ -0.54
DHFR-204ENST00000508282 MTMR2Q13614 643 aa11.66□□□□□ -0.54
DHFR-204ENST00000508282 CSPP1Q1MSJ5 1256 aa11.66□□□□□ -0.54
DHFR-204ENST00000508282 SH3D19Q5HYK7 790 aa11.66□□□□□ -0.54
DHFR-204ENST00000508282 ANKLE1Q8NAG6 615 aa11.66□□□□□ -0.54
DHFR-204ENST00000508282 IL27Q8NEV9 243 aa11.66□□□□□ -0.54
DHFR-204ENST00000508282 TUSC1Q2TAM9 212 aa11.65□□□□□ -0.54
DHFR-204ENST00000508282 DXOO77932 396 aaKnown RBP11.64□□□□□ -0.55
DHFR-204ENST00000508282 HRCP23327 699 aa11.64□□□□□ -0.55
DHFR-204ENST00000508282 CABLES1Q8TDN4 633 aa11.64□□□□□ -0.55
DHFR-204ENST00000508282 EMID1Q96A84 441 aaPredicted RBP11.64□□□□□ -0.55
DHFR-204ENST00000508282 SKIV2LQ15477 1246 aaKnown RBP11.63□□□□□ -0.55
DHFR-204ENST00000508282 QPCTQ16769 361 aa11.63□□□□□ -0.55
DHFR-204ENST00000508282 PLA2G2CQ5R387 149 aa11.63□□□□□ -0.55
DHFR-204ENST00000508282 PRPF38BQ5VTL8 546 aaKnown RBP11.63□□□□□ -0.55
DHFR-204ENST00000508282 ZBTB3Q9H5J0 574 aa11.63□□□□□ -0.55
DHFR-204ENST00000508282 SPDYE5A6NIY4 337 aa11.62□□□□□ -0.55
DHFR-204ENST00000508282 PRR7Q8TB68 274 aa11.62□□□□□ -0.55
DHFR-204ENST00000508282 PRKD2Q9BZL6 878 aa11.62□□□□□ -0.55
DHFR-204ENST00000508282 FCF1Q9Y324 198 aaKnown RBP11.62□□□□□ -0.55
DHFR-204ENST00000508282 LILRB3O75022 631 aa11.61□□□□□ -0.55
DHFR-204ENST00000508282 JUNDP17535 347 aa11.61□□□□□ -0.55
DHFR-204ENST00000508282 PROCA1Q8NCQ7 364 aaPredicted RBP11.61□□□□□ -0.55
DHFR-204ENST00000508282 CFAP99D6REC4 459 aa11.6□□□□□ -0.55
DHFR-204ENST00000508282 FBXO31Q5XUX0 539 aaPredicted RBP11.58□□□□□ -0.56
DHFR-204ENST00000508282 LIAT1Q6ZQX7 453 aa11.58□□□□□ -0.56
DHFR-204ENST00000508282 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.58□□□□□ -0.569e-11■■□□□ 14.2
DHFR-204ENST00000508282 V9GY48 417 aaPredicted RBP11.58□□□□□ -0.56
DHFR-204ENST00000508282 SLC19A1P41440 591 aa11.57□□□□□ -0.56
DHFR-204ENST00000508282 RTL5Q5HYW3 569 aaPredicted RBP11.57□□□□□ -0.56
DHFR-204ENST00000508282 NUTM2BA6NNL0 878 aaPredicted RBP11.56□□□□□ -0.56
DHFR-204ENST00000508282 NUTM2EB1AL46 878 aaPredicted RBP11.56□□□□□ -0.56
DHFR-204ENST00000508282 NUTM2DQ5VT03 806 aaPredicted RBP11.56□□□□□ -0.56
DHFR-204ENST00000508282 NUTM2AQ8IVF1 878 aaPredicted RBP11.56□□□□□ -0.56
DHFR-204ENST00000508282 GOPCQ9HD26 462 aa11.56□□□□□ -0.56
DHFR-204ENST00000508282 DESI1Q6ICB0 168 aa11.55□□□□□ -0.56
DHFR-204ENST00000508282 SPRYD7Q5W111 196 aa11.52□□□□□ -0.57
DHFR-204ENST00000508282 CCDC24Q8N4L8 307 aa11.52□□□□□ -0.57
DHFR-204ENST00000508282 NUDT12Q9BQG2 462 aa11.52□□□□□ -0.57
DHFR-204ENST00000508282 ATP1B4Q9UN42 357 aaPredicted RBP11.52□□□□□ -0.57
DHFR-204ENST00000508282 PTPRNQ16849 979 aa11.51□□□□□ -0.57
DHFR-204ENST00000508282 PCMTD1Q96MG8 357 aaPredicted RBP11.51□□□□□ -0.57
DHFR-204ENST00000508282 CCNYL3P0C7X3 344 aa11.5□□□□□ -0.57
DHFR-204ENST00000508282 RPIAP49247 311 aa11.5□□□□□ -0.57
DHFR-204ENST00000508282 PPP2R2DQ66LE6 453 aa11.5□□□□□ -0.57
DHFR-204ENST00000508282 LYPD8Q6UX82 237 aa11.5□□□□□ -0.57
DHFR-204ENST00000508282 PTCRAQ6ISU1 281 aaPredicted RBP11.49□□□□□ -0.57
DHFR-204ENST00000508282 TSC1Q92574 1164 aa11.49□□□□□ -0.57
DHFR-204ENST00000508282 PER1O15534 1290 aaPredicted RBP11.48□□□□□ -0.57
DHFR-204ENST00000508282 ZNF598Q86UK7 904 aaKnown RBP11.47□□□□□ -0.57
DHFR-204ENST00000508282 EVA1BQ9NVM1 165 aa11.47□□□□□ -0.57
DHFR-204ENST00000508282 ZBTB24O43167 697 aaPredicted RBP11.46□□□□□ -0.57
DHFR-204ENST00000508282 TRIM32Q13049 653 aa11.45□□□□□ -0.58
DHFR-204ENST00000508282 ZNF697Q5TEC3 545 aa11.45□□□□□ -0.58
DHFR-204ENST00000508282 HELBQ8NG08 1087 aaPredicted RBP11.45□□□□□ -0.58
DHFR-204ENST00000508282 CD2BP2O95400 341 aaKnown RBP11.44□□□□□ -0.58
DHFR-204ENST00000508282 CTDSPL2Q05D32 466 aa11.44□□□□□ -0.58
DHFR-204ENST00000508282 KCNH2Q12809 1159 aa11.44□□□□□ -0.58
DHFR-204ENST00000508282 F12P00748 615 aaPredicted RBP11.43□□□□□ -0.58
DHFR-204ENST00000508282 RFC5P40937 340 aa11.43□□□□□ -0.58
DHFR-204ENST00000508282 TRIM67Q6ZTA4 783 aa11.43□□□□□ -0.58
DHFR-204ENST00000508282 IRX2Q9BZI1 471 aaPredicted RBP11.42□□□□□ -0.58
DHFR-204ENST00000508282 MAP10Q9P2G4 905 aa11.42□□□□□ -0.58
DHFR-204ENST00000508282 UNC93B1Q9H1C4 597 aa11.41□□□□□ -0.58
DHFR-204ENST00000508282 AP1G2O75843 785 aa11.4□□□□□ -0.58
DHFR-204ENST00000508282 CTHP32929 405 aa11.4□□□□□ -0.58
DHFR-204ENST00000508282 GDF9O60383 454 aa11.39□□□□□ -0.59
DHFR-204ENST00000508282 SKOR1P84550 965 aa11.39□□□□□ -0.59
DHFR-204ENST00000508282 PKD2L1Q9P0L9 805 aa11.39□□□□□ -0.59
DHFR-204ENST00000508282 LRRN4Q8WUT4 740 aa11.38□□□□□ -0.59
DHFR-204ENST00000508282 PDZRN3Q9UPQ7 1066 aa11.38□□□□□ -0.59
DHFR-204ENST00000508282 GFRA3O60609 400 aa11.37□□□□□ -0.59
DHFR-204ENST00000508282 FOXC1Q12948 553 aa11.37□□□□□ -0.59
DHFR-204ENST00000508282 TNFRSF10AO00220 468 aa11.36□□□□□ -0.59
DHFR-204ENST00000508282 BAP1Q92560 729 aa11.36□□□□□ -0.59
DHFR-204ENST00000508282 WNT7BP56706 349 aa11.35□□□□□ -0.59
DHFR-204ENST00000508282 PRR20EP86478 221 aa11.35□□□□□ -0.59
DHFR-204ENST00000508282 PRR20CP86479 221 aa11.35□□□□□ -0.59
DHFR-204ENST00000508282 PRR20DP86480 221 aa11.35□□□□□ -0.59
DHFR-204ENST00000508282 PRR20BP86481 221 aa11.35□□□□□ -0.59
DHFR-204ENST00000508282 PRR20AP86496 221 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms