RNA–Protein interactions for RNA: ENST00000508216.5

PDLIM5-210, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2 BASIC

Gene PDLIM5, Length 1,794 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-210ENST00000508216 SLC26A8Q96RN1 970 aa13.37□□□□□ -0.27
PDLIM5-210ENST00000508216 ZKSCAN5Q9Y2L8 839 aa13.37□□□□□ -0.27
PDLIM5-210ENST00000508216 CCDC88BA6NC98 1476 aa13.36□□□□□ -0.27
PDLIM5-210ENST00000508216 CALRP27797 417 aaKnown RBP13.36□□□□□ -0.27
PDLIM5-210ENST00000508216 GTF2A1P52655 376 aaPredicted RBP13.36□□□□□ -0.27
PDLIM5-210ENST00000508216 PDCL2Q8N4E4 241 aa13.36□□□□□ -0.27
PDLIM5-210ENST00000508216 RNF217Q8TC41 542 aa13.36□□□□□ -0.27
PDLIM5-210ENST00000508216 CHMP4CQ96CF2 233 aa13.36□□□□□ -0.27
PDLIM5-210ENST00000508216 KIF3CO14782 793 aa13.35□□□□□ -0.27
PDLIM5-210ENST00000508216 RRP1P56182 461 aaKnown RBP13.35□□□□□ -0.27
PDLIM5-210ENST00000508216 SKOR2Q2VWA4 1001 aaPredicted RBP13.35□□□□□ -0.27
PDLIM5-210ENST00000508216 CCDC61Q9Y6R9 512 aa13.35□□□□□ -0.27
PDLIM5-210ENST00000508216 CLIP1P30622 1438 aa13.34□□□□□ -0.27
PDLIM5-210ENST00000508216 HAX1O00165 279 aa13.34□□□□□ -0.27
PDLIM5-210ENST00000508216 ITFG2Q969R8 447 aa13.34□□□□□ -0.27
PDLIM5-210ENST00000508216 MKL1Q969V6 931 aa13.34□□□□□ -0.27
PDLIM5-210ENST00000508216 ZRANB1Q9UGI0 708 aa13.34□□□□□ -0.27
PDLIM5-210ENST00000508216 ANKRD7Q92527 254 aa13.33□□□□□ -0.28
PDLIM5-210ENST00000508216 FAM210AQ96ND0 272 aa13.33□□□□□ -0.28
PDLIM5-210ENST00000508216 ARHGAP31Q2M1Z3 1444 aa13.32□□□□□ -0.28
PDLIM5-210ENST00000508216 POLR1AO95602 1720 aaPredicted RBP13.32□□□□□ -0.28
PDLIM5-210ENST00000508216 DHX16O60231 1041 aaKnown RBP13.32□□□□□ -0.28
PDLIM5-210ENST00000508216 ZNF853P0CG23 659 aa13.32□□□□□ -0.28
PDLIM5-210ENST00000508216 SWT1Q5T5J6 900 aaKnown RBP13.32□□□□□ -0.28
PDLIM5-210ENST00000508216 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.32□□□□□ -0.28
PDLIM5-210ENST00000508216 ZMYM3Q14202 1370 aa13.31□□□□□ -0.28
PDLIM5-210ENST00000508216 KDM2BQ8NHM5 1336 aa13.31□□□□□ -0.28
PDLIM5-210ENST00000508216 PLEKHD1A6NEE1 506 aa13.31□□□□□ -0.28
PDLIM5-210ENST00000508216 PLCB2Q00722 1185 aa13.31□□□□□ -0.28
PDLIM5-210ENST00000508216 SETDB1Q15047 1291 aa13.31□□□□□ -0.28
PDLIM5-210ENST00000508216 SYCP1Q15431 976 aa13.31□□□□□ -0.28
PDLIM5-210ENST00000508216 RPAINQ86UA6 219 aa13.31□□□□□ -0.28
PDLIM5-210ENST00000508216 SGSM3Q96HU1 749 aa13.31□□□□□ -0.28
PDLIM5-210ENST00000508216 TRDNQ13061 729 aa13.3□□□□□ -0.28
PDLIM5-210ENST00000508216 TERF2Q15554 542 aa13.3□□□□□ -0.28
PDLIM5-210ENST00000508216 KNSTRNQ9Y448 316 aa13.3□□□□□ -0.28
PDLIM5-210ENST00000508216 KLHL33A6NCF5 533 aa13.3□□□□□ -0.28
PDLIM5-210ENST00000508216 C11orf91Q3C1V1 193 aa13.3□□□□□ -0.28
PDLIM5-210ENST00000508216 NLRP1Q9C000 1473 aa13.29□□□□□ -0.28
PDLIM5-210ENST00000508216 PPP1R12AO14974 1030 aaPredicted RBP13.29□□□□□ -0.28
PDLIM5-210ENST00000508216 PYGBP11216 843 aa13.29□□□□□ -0.28
PDLIM5-210ENST00000508216 TNNT3P45378 269 aaPredicted RBP13.29□□□□□ -0.28
PDLIM5-210ENST00000508216 UPF2Q9HAU5 1272 aaKnown RBP13.29□□□□□ -0.28
PDLIM5-210ENST00000508216 CCDC189A1A4V9 331 aa13.28□□□□□ -0.28
PDLIM5-210ENST00000508216 NASPP49321 788 aaPredicted RBP13.28□□□□□ -0.28
PDLIM5-210ENST00000508216 MTA1Q13330 715 aa13.28□□□□□ -0.28
PDLIM5-210ENST00000508216 EP400NLQ6ZTU2 488 aa13.28□□□□□ -0.28
PDLIM5-210ENST00000508216 NBPF3Q9H094 633 aa13.28□□□□□ -0.28
PDLIM5-210ENST00000508216 KIF21BO75037 1637 aa13.28□□□□□ -0.28
PDLIM5-210ENST00000508216 USP19O94966 1318 aa13.28□□□□□ -0.28
PDLIM5-210ENST00000508216 PRKRIP1Q9H875 184 aaPredicted RBP13.27□□□□□ -0.28
PDLIM5-210ENST00000508216 CHMP5Q9NZZ3 219 aa13.27□□□□□ -0.28
PDLIM5-210ENST00000508216 NPC1L1Q9UHC9 1359 aa13.27□□□□□ -0.29
PDLIM5-210ENST00000508216 GSCP56915 257 aaPredicted RBP13.27□□□□□ -0.29
PDLIM5-210ENST00000508216 CENPQQ7L2Z9 268 aaPredicted RBP13.27□□□□□ -0.29
PDLIM5-210ENST00000508216 ANKRD23Q86SG2 305 aa13.27□□□□□ -0.29
PDLIM5-210ENST00000508216 RASSF4Q9H2L5 321 aa13.27□□□□□ -0.29
PDLIM5-210ENST00000508216 MUM1L1Q5H9M0 696 aa13.26□□□□□ -0.29
PDLIM5-210ENST00000508216 TSHZ1Q6ZSZ6 1077 aa13.26□□□□□ -0.29
PDLIM5-210ENST00000508216 JMYQ8N9B5 988 aa13.26□□□□□ -0.29
PDLIM5-210ENST00000508216 ZNF579Q8NAF0 562 aaKnown RBP13.26□□□□□ -0.29
PDLIM5-210ENST00000508216 EXOC6Q8TAG9 804 aa13.26□□□□□ -0.29
PDLIM5-210ENST00000508216 PANK3Q9H999 370 aa13.26□□□□□ -0.29
PDLIM5-210ENST00000508216 MORC2Q9Y6X9 1032 aaPredicted RBP13.26□□□□□ -0.29
PDLIM5-210ENST00000508216 CTTNBP2Q8WZ74 1663 aa13.25□□□□□ -0.29
PDLIM5-210ENST00000508216 NRDCO43847 1150 aa13.25□□□□□ -0.29
PDLIM5-210ENST00000508216 TDO2P48775 406 aa13.25□□□□□ -0.29
PDLIM5-210ENST00000508216 ARID4AP29374 1257 aaPredicted RBP13.25□□□□□ -0.29
PDLIM5-210ENST00000508216 XPCQ01831 940 aaPredicted RBP13.25□□□□□ -0.29
PDLIM5-210ENST00000508216 CCDC96Q2M329 555 aa13.25□□□□□ -0.29
PDLIM5-210ENST00000508216 GAS2L3Q86XJ1 694 aa13.25□□□□□ -0.29
PDLIM5-210ENST00000508216 PNISRQ8TF01 805 aaKnown RBP13.25□□□□□ -0.29
PDLIM5-210ENST00000508216 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.25□□□□□ -0.292e-6■■■■■ 86.5
PDLIM5-210ENST00000508216 RSPH14Q9UHP6 348 aa13.25□□□□□ -0.29
PDLIM5-210ENST00000508216 RGL2O15211 777 aa13.24□□□□□ -0.29
PDLIM5-210ENST00000508216 CCDC39Q9UFE4 941 aa13.24□□□□□ -0.29
PDLIM5-210ENST00000508216 MRVI1Q9Y6F6 885 aa13.24□□□□□ -0.29
PDLIM5-210ENST00000508216 BORCS6Q96GS4 357 aa13.23□□□□□ -0.29
PDLIM5-210ENST00000508216 DDX41Q9UJV9 622 aaKnown RBP13.23□□□□□ -0.29
PDLIM5-210ENST00000508216 CTIFO43310 598 aaKnown RBP13.22□□□□□ -0.29
PDLIM5-210ENST00000508216 EVX2Q03828 476 aa13.22□□□□□ -0.29
PDLIM5-210ENST00000508216 ZBTB9Q96C00 473 aa13.22□□□□□ -0.29
PDLIM5-210ENST00000508216 NCOA3Q9Y6Q9 1424 aa13.22□□□□□ -0.29
PDLIM5-210ENST00000508216 UHRF1BP1LA0JNW5 1464 aa13.22□□□□□ -0.29
PDLIM5-210ENST00000508216 REC8O95072 547 aa13.22□□□□□ -0.29
PDLIM5-210ENST00000508216 NEFHP12036 1026 aa13.22□□□□□ -0.29
PDLIM5-210ENST00000508216 LIG1P18858 919 aa13.22□□□□□ -0.29
PDLIM5-210ENST00000508216 MLECQ14165 292 aa13.22□□□□□ -0.29
PDLIM5-210ENST00000508216 KIF12Q96FN5 646 aa13.22□□□□□ -0.29
PDLIM5-210ENST00000508216 MRS2Q9HD23 443 aa13.22□□□□□ -0.29
PDLIM5-210ENST00000508216 STK26Q9P289 416 aa13.22□□□□□ -0.29
PDLIM5-210ENST00000508216 MAP3K1Q13233 1512 aa13.21□□□□□ -0.29
PDLIM5-210ENST00000508216 CASQ1P31415 396 aa13.21□□□□□ -0.29
PDLIM5-210ENST00000508216 RAD51AP2Q09MP3 1159 aa13.21□□□□□ -0.29
PDLIM5-210ENST00000508216 CCDC91Q7Z6B0 441 aa13.21□□□□□ -0.29
PDLIM5-210ENST00000508216 GZF1Q9H116 711 aaPredicted RBP13.21□□□□□ -0.29
PDLIM5-210ENST00000508216 PAXBP1Q9Y5B6 917 aa13.21□□□□□ -0.29
PDLIM5-210ENST00000508216 IGF1RP08069 1367 aa13.21□□□□□ -0.3
PDLIM5-210ENST00000508216 CTAGE5O15320 804 aa13.2□□□□□ -0.3
PDLIM5-210ENST00000508216 PHF12Q96QT6 1004 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms